View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5254_low_9 (Length: 208)
Name: NF5254_low_9
Description: NF5254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5254_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 3e-93; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 33857155 - 33856955
Alignment:
| Q |
1 |
aacaaagattaaacaatttaaatgtcatacatacaactggaggactaatattatggtggatggcaacaaaccaaaaatcatggcattgcggcatatggta |
100 |
Q |
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| T |
33857155 |
aacaaagattaaacaatttaaatgtcatacatacaactggaggactaatattatggtggatggcaacaaaccaaaaatcatggcattgcagcatatggta |
33857056 |
T |
|
| Q |
101 |
gaaccatggcatatatatatagcaagcnnnnnnnncggcagaaaatcataaacatatgtgaagtgcaattaataatcataaactactaatcattcatctc |
200 |
Q |
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| T |
33857055 |
gaaccatggcatatatatatagcaagcaaaaaaaacggcagaaaatcataaacatatgtgaagtgcaattaataatcataaactactaatcattcatctc |
33856956 |
T |
|
| Q |
201 |
a |
201 |
Q |
| |
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| |
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| T |
33856955 |
a |
33856955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 33923768 - 33923968
Alignment:
| Q |
1 |
aacaaagattaaacaatttaaatgtcatacatacaactggaggactaatattatggtggatggcaacaaaccaaaaatcatggcattgcggcatatggta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
33923768 |
aacaaagattaaacaatttaaatgtcatacatacaactggaggactaatattatggtggatggcaacaaaccaaaaatcatggcattgcagcatatggta |
33923867 |
T |
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| Q |
101 |
gaaccatggcatatatatatagcaagcnnnnnnnncggcagaaaatcataaacatatgtgaagtgcaattaataatcataaactactaatcattcatctc |
200 |
Q |
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| T |
33923868 |
gaaccatggcatatatatatagcaagcaaaaaaaacggcagaaaatcataaacatatgtgaagtgcaattaataatcataaactactaatcattcatctc |
33923967 |
T |
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| Q |
201 |
a |
201 |
Q |
| |
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| |
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|
| T |
33923968 |
a |
33923968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 35 - 103
Target Start/End: Complemental strand, 47872464 - 47872396
Alignment:
| Q |
35 |
aactggaggactaatattatggtggatggcaacaaaccaaaaatcatggcattgcggcatatggtagaa |
103 |
Q |
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|||| ||| |||||| ||||| |||||||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
47872464 |
aactagagaactaatgttatgttggatggcgacaaaccaaaaatcatggcattacggcatatggtagaa |
47872396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 189
Target Start/End: Complemental strand, 47872343 - 47872307
Alignment:
| Q |
153 |
catatgtgaagtgcaattaataatcataaactactaa |
189 |
Q |
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| T |
47872343 |
catatgagaagtgcaatgaataatcataaactactaa |
47872307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 189
Target Start/End: Complemental strand, 14961599 - 14961558
Alignment:
| Q |
148 |
ataaacatatgtgaagtgcaattaataatcataaactactaa |
189 |
Q |
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||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
14961599 |
ataaacatatgtgaaatgcaatgaataatcataaactactaa |
14961558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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