View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5255-Insertion-1 (Length: 580)
Name: NF5255-Insertion-1
Description: NF5255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5255-Insertion-1 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 7 - 580
Target Start/End: Original strand, 20975644 - 20976232
Alignment:
| Q |
7 |
atatgaccaccaatacatgatcatgaccatgaccattagcaccaacatttcctgatcattggtaaagaataagataattgtgtgatgatgttgcgtatgg |
106 |
Q |
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| T |
20975644 |
atatgaccaccaatacatgatcatgaccatgaccattagcaccaacatttcctgatcattggtaaagaataagataattgtgtgatgatgttgcgtgtgg |
20975743 |
T |
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| Q |
107 |
gatctcatttagcattttcttttacctctcttccatcatcctcatgttttcggttatctttttcaccatatcaaaccacaatggtttcttt--cacacag |
204 |
Q |
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| T |
20975744 |
gatctcatttagcattttcttctacctctcttccatcatcctcacgttttcggttatctttttcaccatatcaaaccacaatggtttctttcacacacag |
20975843 |
T |
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| Q |
205 |
aggaacc-nnnnnnnggtcactctgactaaggtacatagaagaagtaaacaatcagaggaagcactgaatcaggaaataatgaagag-nnnnnnnccaca |
302 |
Q |
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| T |
20975844 |
aggaaccaaaaaaaaggtcactccgactaaggaacatagaagaagtaaacaatcagaggaagcactgaatcaggaaataatgaagagaaaaaaaaacaca |
20975943 |
T |
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| Q |
303 |
nnnnnnnncttcttcgtggttgaaggatgcannnnnnnnaacaagtaattgaaggattataaataacagaagaagcaaagaataaattgatcatataact |
402 |
Q |
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| T |
20975944 |
ttttttttcttctttgtggttgaaggatgca-tttttttaacaagtaattgaaggattctaaataacagaagaagcaaagaataaattgatcatataact |
20976042 |
T |
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| Q |
403 |
agggactaaaggatcaaaagtggaatattgaaatgat-----------gattgaagatttatatactgt-atgaaattgatgctacatagtcacacattt |
490 |
Q |
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| T |
20976043 |
agggactaaaggatcaaaagcggaatattgaaatgatgattgaagtaagattgaagatttatatactttgttggtgttgatgctacatagtcacacattt |
20976142 |
T |
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| Q |
491 |
ctaactagtggtacttgtatgaaatcaggtatggatattgtgcaatgattgtggtgtaaactctcatgtgcaattccacactgtggcaca |
580 |
Q |
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| T |
20976143 |
ctaactagtggtacttgtatgaaatcaggtatggatattgtgcaatgattgtggtgtaaactctcatgtgcaattccacattgtggcaca |
20976232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 199
Target Start/End: Complemental strand, 20975627 - 20975447
Alignment:
| Q |
19 |
atacatgatcatgaccatgaccattagcaccaacatttcctgatcattggtaaagaataagataattgtgtgatgatgttgcgtatgggatctcatttag |
118 |
Q |
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| T |
20975627 |
atacatgatcgtgatcatgatcatcaccaccgacacttcgttgtcatttgtaaagacgaagaagattgtgtgatgatgatgcgtgatggacctcattcag |
20975528 |
T |
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| Q |
119 |
cattttcttttacctctcttccatcatcctcatgttttcggttatctttttcaccatatc-aaaccacaatggtttctttca |
199 |
Q |
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| T |
20975527 |
caactt-ttttaggtctcttccaacatcctcacgttttctcatatcttttttaccatatcaaaaccacaatggtttctttca |
20975447 |
T |
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