View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5255-Insertion-2 (Length: 413)
Name: NF5255-Insertion-2
Description: NF5255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5255-Insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 132; Significance: 2e-68; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 274 - 409
Target Start/End: Original strand, 929746 - 929881
Alignment:
| Q |
274 |
aaccattttaatatgcgacactatgccgcttacattcattgagtttccttcaaagataatttgatttctacctagcaaaatgcattagattgtatccatc |
373 |
Q |
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| T |
929746 |
aaccattttaatatgcgacactatgccgcttacattcattgagtttccttcaaagataatttgatttctacctagaaaaatgcattagattgtatccatc |
929845 |
T |
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| Q |
374 |
catacacgataaatgtgagaatttcctacctttctt |
409 |
Q |
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| T |
929846 |
catacacgataaatgtgagaatttcctacctttctt |
929881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 929256 - 929340
Alignment:
| Q |
26 |
cacatcatagagagaagccaaacattcgggcacaacagccgaacttagacggtcttctgaaacattaaagaaagtccgaataaga |
110 |
Q |
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| T |
929256 |
cacaacatagagagaagccaaacattcgggcacaacagccgaacttagacggtcttctgaaacattaaagaaagtccgagtaaga |
929340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 105 - 184
Target Start/End: Original strand, 929362 - 929441
Alignment:
| Q |
105 |
ataagaaacagtaagacgatgaaataagtcacaataaggaccttgtgaagtttttgtatgatatgaaaaatgtatcatga |
184 |
Q |
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| T |
929362 |
ataaaaaacagtaagacgatgaaataagtcacaattaggaccttgtgaagtttttgtatgatatgaaaaatgtatcatga |
929441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 83 - 179
Target Start/End: Complemental strand, 1201614 - 1201514
Alignment:
| Q |
83 |
tgaaacattaaagaaagtccgaataaga----aacagtaagacgatgaaataagtcacaataaggaccttgtgaagtttttgtatgatatgaaaaatgta |
178 |
Q |
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| T |
1201614 |
tgaaacattaaagataatctgaataagattaaaacagtaagacaatgcaataactcacaatcaggacctcgtgaagtttttgtatgatatgaaaaatgta |
1201515 |
T |
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| Q |
179 |
t |
179 |
Q |
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| |
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| T |
1201514 |
t |
1201514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 1201696 - 1201640
Alignment:
| Q |
26 |
cacatcatagagagaagccaaacattcgggcacaacagccgaacttagacggtcttc |
82 |
Q |
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| T |
1201696 |
cacaacatggagagaagccaaacattcgggcacaacagcagaacttagacgctcttc |
1201640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 261
Target Start/End: Original strand, 929642 - 929676
Alignment:
| Q |
227 |
ataaccgtttaacggtttagtcctcgattccatcc |
261 |
Q |
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| T |
929642 |
ataacagtttaacggtttagtcctcgattccatcc |
929676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 8188529 - 8188573
Alignment:
| Q |
26 |
cacatcatagagagaagccaaacattcgggcacaacagccgaact |
70 |
Q |
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| T |
8188529 |
cacaacatggagagaagccaaacaatcgggcacaacagcagaact |
8188573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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