View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5255-Insertion-5 (Length: 272)
Name: NF5255-Insertion-5
Description: NF5255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5255-Insertion-5 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 7 - 272
Target Start/End: Original strand, 41747090 - 41747355
Alignment:
| Q |
7 |
agattgcaccctcttgtaaactgcatgccaaccattttgagaaggatggaaattgttccaatagaatgaaagccctggcttatcacatacactatatttc |
106 |
Q |
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| T |
41747090 |
agattgcaccctcttgtaaactgcatgccaaccattttgagaaggatggaaattgttccaatagaatgaaagccctggtttatcacatacactatatttc |
41747189 |
T |
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| Q |
107 |
tttgctcctttctcatcgacacttccacaataataacttgaactcactcccacacaacatggttgcaatggattcatcaatgttgagtttgctgcataat |
206 |
Q |
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| T |
41747190 |
tttgctcctttctcatcgacacttccacaataataacttgaactcactcccacacaacatggttgcaatggattcatcaatgttgagtttgctgcataat |
41747289 |
T |
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| Q |
207 |
ggagaaaagttattaggtgcaaaagttagttatactaattaattagttaagttcgttagttcgttg |
272 |
Q |
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| T |
41747290 |
ggagaaaagttattaggtgcaaaagttagttatactaattaattagttaagttcgttagttcgttg |
41747355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 32 - 202
Target Start/End: Original strand, 41753477 - 41753647
Alignment:
| Q |
32 |
tgccaaccattttgagaaggatggaaattgttccaatagaatgaaagccctggcttatcacatacactatatttctttgctcctttctcatcgacacttc |
131 |
Q |
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| T |
41753477 |
tgccaaccattttgagaaggatgtacaccgtcccaaaagaatgaaagctctggtttctcacatacactatatttcttttctcctttatcatccacacttc |
41753576 |
T |
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| Q |
132 |
cacaataataacttgaactcactcccacacaacatggttgcaatggattcatcaatgttgagtttgctgca |
202 |
Q |
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| T |
41753577 |
cacaattatttttcaaaccatctcccacacaacacgctttcaatggattcatcagtgttgagttttctgca |
41753647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 196
Target Start/End: Original strand, 41732441 - 41732615
Alignment:
| Q |
22 |
gtaaactgcatgccaaccattttgagaaggatggaaattgttccaatagaatgaaagccctggcttatcacatacactatatttctttgctcctttctca |
121 |
Q |
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| T |
41732441 |
gtaaacttcataccaaccattttgagaagggtgaactgtgtcccaaaagagtgaagactcaagcttctcacatacactatatttccttgctcctttatta |
41732540 |
T |
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| Q |
122 |
tcgacacttccacaataataacttgaactcactcccacacaacatggttgcaatggattcatcaatgttgagttt |
196 |
Q |
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| T |
41732541 |
tcaacacttccacaaaaatatttcaaatcctctcccttacaacacggttgcaacggattcatcactgttgagttt |
41732615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 214
Target Start/End: Original strand, 41757858 - 41758043
Alignment:
| Q |
29 |
gcatgccaaccattttgagaaggatggaaattgttccaatagaatgaaagccctggcttatcacatacactatatttctttgctcctttctcatcgacac |
128 |
Q |
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| T |
41757858 |
gcatgccaaccattttgagaagggtgaacattgtcccaaaagaatgaaagctttggtttctcacataaactgtatttcttttctccattatcatccactt |
41757957 |
T |
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| Q |
129 |
ttccacaataataacttgaactcactcccacacaacatggttgcaatggattcatcaatgttgagtttgctgcataatggagaaaa |
214 |
Q |
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| T |
41757958 |
ttccacaagtatttgtcaaaccatctccctcacaacatgatttcagtggattcatcagggttgagttttctgtacaatggagaaaa |
41758043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 41738618 - 41738650
Alignment:
| Q |
153 |
ctcccacacaacatggttgcaatggattcatca |
185 |
Q |
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| T |
41738618 |
ctcccacacaacatggttgcaacggattcatca |
41738650 |
T |
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