View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5255_high_19 (Length: 358)
Name: NF5255_high_19
Description: NF5255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5255_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 32590030 - 32589679
Alignment:
| Q |
1 |
atgaaatatatgtaaaattaacaacatgatacatgattagtgaactaaaaaacaatccaaggtttgattagtagcagttgatttatctatttattttggg |
100 |
Q |
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| T |
32590030 |
atgaaatatatgtaaaattaacaacatgatacataattagtgaactaaaaaacaatccaaggtttgattagtggcagttgatttatttatttattttggg |
32589931 |
T |
|
| Q |
101 |
tgaaccctagtggcagttgatgctttttaagagaaaaattgttttattatttctagaatttaatgttgtttgggagctagctttagctctaggtatgacg |
200 |
Q |
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| T |
32589930 |
tgaaccctagtggcagttgatgctttttaagagaaaaattgttttattatttctagaatttaatgttgtttgggagctagctttagctctaggtatgacg |
32589831 |
T |
|
| Q |
201 |
aaattaaacatctattttatgccaataggaaaagttgtatgcgatctttccacgttgaggataatagacatccaaagtaaagtacatacatatacatata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32589830 |
aaattaaacatctattttatgccaataggaaaagttgtatccgatctttccacgttgaggataatagacatccaaagtaaagtacatacatatacatata |
32589731 |
T |
|
| Q |
301 |
ttggaccaagacacttaagcattttgtttgattttcatacgagtattatcta |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32589730 |
ttggaccaagacacttaagcattttgtttgattttcatacgaatattatcta |
32589679 |
T |
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