View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5255_high_2 (Length: 596)

Name: NF5255_high_2
Description: NF5255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5255_high_2
NF5255_high_2
[»] chr5 (20 HSPs)
chr5 (10-431)||(36577303-36577721)
chr5 (10-285)||(36566409-36566681)
chr5 (10-285)||(36629905-36630177)
chr5 (423-578)||(36578084-36578228)
chr5 (318-487)||(26205690-26205861)
chr5 (334-438)||(43554528-43554633)
chr5 (382-446)||(39695995-39696059)
chr5 (381-459)||(25863190-25863268)
chr5 (526-578)||(36573277-36573329)
chr5 (396-495)||(42469171-42469270)
chr5 (382-459)||(5467974-5468051)
chr5 (385-462)||(21137672-21137749)
chr5 (386-458)||(7997166-7997238)
chr5 (388-452)||(31264431-31264495)
chr5 (399-446)||(2577193-2577240)
chr5 (388-459)||(18288053-18288124)
chr5 (412-482)||(13287425-13287495)
chr5 (403-496)||(22013363-22013456)
chr5 (412-465)||(39205860-39205913)
chr5 (383-439)||(18607094-18607150)
[»] chr2 (16 HSPs)
chr2 (381-482)||(23354647-23354748)
chr2 (381-462)||(23354990-23355071)
chr2 (382-462)||(25544466-25544544)
chr2 (381-459)||(37986765-37986843)
chr2 (382-439)||(24011042-24011099)
chr2 (389-442)||(38919209-38919262)
chr2 (403-495)||(20539691-20539783)
chr2 (381-464)||(19573960-19574042)
chr2 (384-446)||(10535757-10535819)
chr2 (381-435)||(11307999-11308053)
chr2 (400-474)||(30298461-30298535)
chr2 (386-439)||(12748690-12748743)
chr2 (384-428)||(30394474-30394518)
chr2 (382-446)||(30563408-30563472)
chr2 (392-440)||(34006997-34007045)
chr2 (320-398)||(37419796-37419875)
[»] chr8 (19 HSPs)
chr8 (322-495)||(39820379-39820547)
chr8 (389-487)||(3658105-3658203)
chr8 (322-439)||(35431080-35431193)
chr8 (381-446)||(13845233-13845298)
chr8 (381-487)||(44067474-44067580)
chr8 (386-450)||(1676707-1676771)
chr8 (383-446)||(13009490-13009553)
chr8 (381-459)||(26915235-26915313)
chr8 (392-495)||(25192353-25192456)
chr8 (383-440)||(8017491-8017548)
chr8 (389-453)||(9936806-9936870)
chr8 (382-438)||(40063958-40064014)
chr8 (386-445)||(30068028-30068087)
chr8 (412-459)||(34739087-34739134)
chr8 (403-437)||(7253579-7253613)
chr8 (392-462)||(34897068-34897138)
chr8 (392-465)||(15816135-15816208)
chr8 (403-459)||(39954296-39954352)
chr8 (431-471)||(41838168-41838208)
[»] chr7 (16 HSPs)
chr7 (322-446)||(23751899-23752018)
chr7 (320-462)||(4017727-4017870)
chr7 (322-438)||(29812598-29812716)
chr7 (381-481)||(43249957-43250057)
chr7 (381-453)||(23930211-23930283)
chr7 (381-446)||(7133273-7133338)
chr7 (392-481)||(19206014-19206103)
chr7 (389-446)||(13427575-13427632)
chr7 (381-454)||(38804550-38804623)
chr7 (360-439)||(5938478-5938558)
chr7 (389-459)||(22683758-22683826)
chr7 (392-466)||(38134412-38134486)
chr7 (380-461)||(17780078-17780159)
chr7 (403-459)||(5235972-5236028)
chr7 (392-444)||(18233604-18233656)
chr7 (412-460)||(30516383-30516431)
[»] chr6 (22 HSPs)
chr6 (383-495)||(6389693-6389805)
chr6 (383-497)||(2153884-2153998)
chr6 (397-459)||(7625108-7625170)
chr6 (381-459)||(17168458-17168536)
chr6 (322-445)||(34446565-34446690)
chr6 (386-459)||(12086345-12086418)
chr6 (400-460)||(13211295-13211355)
chr6 (382-444)||(19602177-19602239)
chr6 (381-439)||(26247432-26247490)
chr6 (392-476)||(7086764-7086848)
chr6 (390-461)||(6299496-6299567)
chr6 (390-461)||(6306306-6306377)
chr6 (392-482)||(7938079-7938169)
chr6 (388-445)||(12235521-12235578)
chr6 (412-452)||(17422281-17422321)
chr6 (403-474)||(8805589-8805660)
chr6 (419-462)||(10760874-10760917)
chr6 (382-437)||(30781290-30781345)
chr6 (412-482)||(426540-426610)
chr6 (393-458)||(9024183-9024248)
chr6 (419-480)||(33303624-33303685)
chr6 (320-367)||(12868614-12868662)
[»] chr4 (17 HSPs)
chr4 (322-444)||(3144587-3144710)
chr4 (317-487)||(24343465-24343637)
chr4 (380-458)||(20743272-20743350)
chr4 (381-454)||(6273935-6274008)
chr4 (396-472)||(7012039-7012115)
chr4 (381-425)||(23386166-23386210)
chr4 (383-447)||(31243545-31243609)
chr4 (403-470)||(16303283-16303350)
chr4 (422-482)||(20633448-20633508)
chr4 (396-436)||(49659533-49659573)
chr4 (320-459)||(53381528-53381665)
chr4 (389-495)||(19230312-19230418)
chr4 (399-460)||(7424655-7424716)
chr4 (393-458)||(34515881-34515946)
chr4 (393-466)||(56488517-56488590)
chr4 (431-471)||(11651179-11651219)
chr4 (386-494)||(12084171-12084279)
[»] chr3 (18 HSPs)
chr3 (345-459)||(14223811-14223926)
chr3 (323-454)||(15864824-15864950)
chr3 (322-453)||(25074781-25074914)
chr3 (386-487)||(24205041-24205142)
chr3 (381-444)||(27903633-27903696)
chr3 (381-438)||(25892467-25892524)
chr3 (381-444)||(12704652-12704715)
chr3 (383-474)||(25652028-25652119)
chr3 (389-447)||(34189425-34189483)
chr3 (381-439)||(52369781-52369839)
chr3 (322-454)||(8903423-8903554)
chr3 (322-444)||(21211289-21211413)
chr3 (381-444)||(25326427-25326490)
chr3 (388-438)||(3730167-3730217)
chr3 (392-458)||(20691306-20691372)
chr3 (381-459)||(41319305-41319383)
chr3 (412-465)||(23870585-23870638)
chr3 (381-429)||(21367293-21367341)
[»] scaffold0598 (1 HSPs)
scaffold0598 (385-462)||(8052-8129)
[»] chr1 (13 HSPs)
chr1 (381-445)||(42004942-42005006)
chr1 (381-444)||(6936395-6936458)
chr1 (387-446)||(6573988-6574047)
chr1 (389-461)||(48415728-48415801)
chr1 (388-459)||(22794080-22794151)
chr1 (392-459)||(22907345-22907412)
chr1 (412-459)||(26462671-26462718)
chr1 (383-446)||(39101179-39101242)
chr1 (403-462)||(46348400-46348459)
chr1 (392-446)||(373046-373100)
chr1 (392-437)||(12040688-12040734)
chr1 (392-445)||(11412774-11412827)
chr1 (381-446)||(40747768-40747833)
[»] scaffold0007 (1 HSPs)
scaffold0007 (381-487)||(225263-225369)
[»] scaffold0199 (1 HSPs)
scaffold0199 (386-450)||(1944-2008)
[»] scaffold0722 (1 HSPs)
scaffold0722 (403-464)||(7049-7110)
[»] scaffold0024 (1 HSPs)
scaffold0024 (393-437)||(68249-68293)
[»] scaffold0049 (1 HSPs)
scaffold0049 (393-458)||(56909-56974)
[»] scaffold0223 (1 HSPs)
scaffold0223 (403-495)||(20122-20214)
[»] scaffold0018 (1 HSPs)
scaffold0018 (412-472)||(192275-192335)


Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 10 - 431
Target Start/End: Original strand, 36577303 - 36577721
Alignment:
Q  10 attatactcacttggtgctaggaaattatccataactggtcttattcctatggggtgtctcccattagaaagggctataaatatttttggtggctttcat 109  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  36577303 attatactcacttggtgctaggaaattagccataactggtcttattcctatggggtgtcttccattagaaagggctataaatatttttggtggctttcat 36577402  T
Q  110 cgttgctatgaaaaatacaatatagtggctttggaatttaatgtcaaattggagaatatgatatcaaaggtaaataaggatctcccacaattgaaggcct 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||    
T  36577403 cgttgctatgaaaaatacaatatagtggctttggaatttaatgtcaaattggagaatatgatatcaaagttaaataaggagcttccacaattgaaggcct 36577502  T
Q  210 tgtcagcaaatgtatatgaccttttcaatgatatcattacaagaccttccttctatggtatgctttctttatttgtaaattagtaccnnnnnnnncacat 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||    
T  36577503 tgtcagcaaatgtatatgaccttttcaatgatatcattacaagaccttccttctatggtatgctttctttatttgtaaattagta---aaaaaaacacat 36577599  T
Q  310 aaaaatcatgacctatgaagcacagacacttattggattaagcgtgtcccgtgtcggatacgcattgatgtcgacaccgacacgacacctatgattatac 409  Q
    ||||||||||||||| ||||||||||||||| |||||||| |||| ||||||||||||||||||| | |||||||||||||||||||| ||| |||||||    
T  36577600 aaaaatcatgacctacgaagcacagacacttcttggattaggcgtatcccgtgtcggatacgcatcggtgtcgacaccgacacgacacatataattatac 36577699  T
Q  410 taaattatatcattttctcata 431  Q
    ||||||||||||||||||||||    
T  36577700 taaattatatcattttctcata 36577721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 10 - 285
Target Start/End: Original strand, 36566409 - 36566681
Alignment:
Q  10 attatactcacttggtgctaggaaattatccataactggtcttattcctatggggtgtctcccattagaaagggctataaatatttttggtggctttcat 109  Q
    |||| ||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||| |   |||    
T  36566409 attacactcacttggtgctaggaaattatctataactggtcttgttcctattgggtgtctcccattagaaagggctacaaatatttttggtgac---cat 36566505  T
Q  110 cgttgctatgaaaaatacaatatagtggctttggaatttaatgtcaaattggagaatatgatatcaaaggtaaataaggatctcccacaattgaaggcct 209  Q
      |||| ||||||||||||||| |||||||||| ||||||||| ||| ||||||||||||||||||||| ||||||||||  | |||||||||||||| |    
T  36566506 gcttgcaatgaaaaatacaatagagtggctttgcaatttaatgccaagttggagaatatgatatcaaagctaaataaggagttaccacaattgaaggctt 36566605  T
Q  210 tgtcagcaaatgtatatgaccttttcaatgatatcattacaagaccttccttctatggtatgctttctttatttgt 285  Q
    |||| ||||||| ||||||  || |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  36566606 tgtcggcaaatgcatatgagattgtcaatgatatcattacaagaccttccttctatggtatgttttctttatttgt 36566681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 10 - 285
Target Start/End: Original strand, 36629905 - 36630177
Alignment:
Q  10 attatactcacttggtgctaggaaattatccataactggtcttattcctatggggtgtctcccattagaaagggctataaatatttttggtggctttcat 109  Q
    |||| ||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||| |   |||    
T  36629905 attacactcacttggtgctaggaaattatctataactggtcttgttcctattgggtgtctcccattagaaagggctacaaatatttttggtgac---cat 36630001  T
Q  110 cgttgctatgaaaaatacaatatagtggctttggaatttaatgtcaaattggagaatatgatatcaaaggtaaataaggatctcccacaattgaaggcct 209  Q
      |||| ||||||||||||||| |||||||||| ||||||||| ||| ||||||||||||||||||||| ||||||||||  | |||||||||||||| |    
T  36630002 gcttgcaatgaaaaatacaatagagtggctttgcaatttaatgccaagttggagaatatgatatcaaagctaaataaggagttaccacaattgaaggctt 36630101  T
Q  210 tgtcagcaaatgtatatgaccttttcaatgatatcattacaagaccttccttctatggtatgctttctttatttgt 285  Q
    |||| ||||||| ||||||  || |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  36630102 tgtcggcaaatgcatatgagattgtcaatgatatcattacaagaccttccttctatggtatgttttctttatttgt 36630177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 423 - 578
Target Start/End: Original strand, 36578084 - 36578228
Alignment:
Q  423 tttctcatattattatctgtgtcgacgtgtcggtgtccgtatcttgtctggtatccgtgtatgtgcttcatagatcatgacattgatagtatggtgtata 522  Q
    |||||||||||||||||||||||||||||||||||||||           ||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  36578084 tttctcatattattatctgtgtcgacgtgtcggtgtccg-----------gtatccgtgtccgtgcttcatagatcatgacattgatagtatggtgtata 36578172  T
Q  523 taatttgtaggaattgaggaggtagagaaggcatgttgttccaccggaacaattga 578  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  36578173 taatttgtaggaattgaggaggtagagaaggcatgttgttccactggaacaattga 36578228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 318 - 487
Target Start/End: Original strand, 26205690 - 26205861
Alignment:
Q  318 tgacctatgaagcacagacacttattggattaagcgtgtcccg-tgtcggatacgcattgatgtc-gacaccgacacgacacctatgattatactaaatt 415  Q
    ||||||||||||||| ||||| | |||||||| | |||||||| |||||||||||| ||| |||| |||||| |||||||||||||||||| ||| ||||    
T  26205690 tgacctatgaagcacggacaccttttggattacgtgtgtcccggtgtcggatacgcgttggtgtccgacaccaacacgacacctatgattacactgaatt 26205789  T
Q  416 atatcattttctcatattattatctgtgtcgacgtgtcggtgtccgtatcttgtctggtatccgtgtatgtg 487  Q
    || ||||||||||| | | ||||| || |||||||||| |||||| | || |||| ||| ||||||| ||||    
T  26205790 atgtcattttctcaaaattttatcggtatcgacgtgtcagtgtccatgtcatgtccggtgtccgtgtctgtg 26205861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 334 - 438
Target Start/End: Complemental strand, 43554633 - 43554528
Alignment:
Q  334 gacacttattggattaagcgtgtcccgtgtcggatacgcattgatgtc-gacaccgacacgacacctatgattatactaaattatatcattttctcatat 432  Q
    ||||||| | |||||| ||||||||||||||||| |||| | | |||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  43554633 gacacttctcggattaggcgtgtcccgtgtcggacacgcgtcggtgtccgacaccgacacgacacctatgattacactaaattatatcattttctcaaat 43554534  T
Q  433 tattat 438  Q
    ||||||    
T  43554533 tattat 43554528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 382 - 446
Target Start/End: Original strand, 39695995 - 39696059
Alignment:
Q  382 gacaccgacacgacacctatgattatactaaattatatcattttctcatattattatctgtgtcg 446  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| |||||| || ||||||    
T  39695995 gacaccgacacgacacctatgattacactaaattatatcattttctcaaattattgtcggtgtcg 39696059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 381 - 459
Target Start/End: Complemental strand, 25863268 - 25863190
Alignment:
Q  381 cgacaccgacacgacacctatgattatactaaattatatcattttctcatattattatctgtgtcgacgtgtcggtgtc 459  Q
    |||||| |||||||||| ||| |||| ||| |||||||||||||||||| ||||||||   ||||||||||||| ||||    
T  25863268 cgacactgacacgacacttataattacactgaattatatcattttctcaaattattatacatgtcgacgtgtcgatgtc 25863190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 526 - 578
Target Start/End: Original strand, 36573277 - 36573329
Alignment:
Q  526 tttgtaggaattgaggaggtagagaaggcatgttgttccaccggaacaattga 578  Q
    |||| |||| ||||||||||||||||||||||||||||||| |||||| ||||    
T  36573277 tttgcaggatttgaggaggtagagaaggcatgttgttccactggaacatttga 36573329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 396 - 495
Target Start/End: Complemental strand, 42469270 - 42469171
Alignment:
Q  396 acctatgattatactaaattatatcattttctcatattattatctgtgtcgacgtgtcggtgtccgtatcttgtctggtatccgtgtatgtgcttcatag 495  Q
    ||||||||||| |||||| ||| ||||||||||| ||||||||| |||||| ||||||  | ||||| || |||  ||| |||||||  |||||||||||    
T  42469270 acctatgattacactaaaatatgtcattttctcaaattattatccgtgtcggcgtgtcattatccgtgtcgtgttcggtgtccgtgtccgtgcttcatag 42469171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 382 - 459
Target Start/End: Original strand, 5467974 - 5468051
Alignment:
Q  382 gacaccgacacgacacctatgattatactaaattatatcattttctcatattattatctgtgtcgacgtgtcggtgtc 459  Q
    |||||||||||||||||||| |||| ||| |||||| | ||||| ||| ||||||||| || | |||||||| |||||    
T  5467974 gacaccgacacgacacctataattacactgaattatgtgattttatcaaattattatcggtattgacgtgtcagtgtc 5468051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 385 - 462
Target Start/End: Complemental strand, 21137749 - 21137672
Alignment:
Q  385 accgacacgacacctatgattatactaaattatatcattttctcatattattatctgtgtcgacgtgtcggtgtccgt 462  Q
    |||||||||||||||||||||  ||| |||||  ||||||||||| ||||||| |  ||||| |||||| ||||||||    
T  21137749 accgacacgacacctatgatttcactgaattacgtcattttctcagattattaccgatgtcggcgtgtcagtgtccgt 21137672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 458
Target Start/End: Original strand, 7997166 - 7997238
Alignment:
Q  386 ccgacacgacacctatgattatactaaattatatcattttctcatattattatctgtgtcgacgtgtcggtgt 458  Q
    |||||||||||| ||| |||| |||  ||||||||||||||||| ||||||||| |||| | |||||| ||||    
T  7997166 ccgacacgacacttataattacactgtattatatcattttctcaaattattatccgtgttggcgtgtcagtgt 7997238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 452
Target Start/End: Complemental strand, 31264495 - 31264431
Alignment:
Q  388 gacacgacacctatgattatactaaattatatcattttctcatattattatctgtgtcgacgtgt 452  Q
    |||||||||| |||||||| ||| |||||| ||||||||||| |||||||  |||||||| ||||    
T  31264495 gacacgacacttatgattacactgaattatgtcattttctcaaattattacttgtgtcgatgtgt 31264431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 446
Target Start/End: Original strand, 2577193 - 2577240
Alignment:
Q  399 tatgattatactaaattatatcattttctcatattattatctgtgtcg 446  Q
    |||||||| |||||||||| ||||||||||| ||||||||| ||||||    
T  2577193 tatgattacactaaattatgtcattttctcaaattattatcggtgtcg 2577240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 459
Target Start/End: Original strand, 18288053 - 18288124
Alignment:
Q  388 gacacgacacctatgattatactaaattatatcattttctcatattattatctgtgtcgacgtgtcggtgtc 459  Q
    |||| |||||||||||||||||| | |||  ||||||||||| ||||||||| |||||  ||| ||||||||    
T  18288053 gacatgacacctatgattatactgagttaagtcattttctcaaattattatccgtgtcagcgtctcggtgtc 18288124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 412 - 482
Target Start/End: Original strand, 13287425 - 13287495
Alignment:
Q  412 aattatatcattttctcatattattatctgtgtcgacgtgtcggtgtccgtatcttgtctggtatccgtgt 482  Q
    |||||| | ||||| ||| ||||||||||||||||||||||  |||||||| || |||| ||| |||||||    
T  13287425 aattatgtgattttttcaaattattatctgtgtcgacgtgttagtgtccgtgtcgtgtccggtgtccgtgt 13287495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 496
Target Start/End: Complemental strand, 22013456 - 22013363
Alignment:
Q  403 attatactaaattatatcattttctcatattattatctgtgtcgacgtgtcggtgtccgtatcttgtctggtatccgtgtatgtgcttcataga 496  Q
    |||| |||||||||| | |||||  || ||||||| |||||||| |||||| |||||||| || |||| ||| ||||| |  ||||||||||||    
T  22013456 attacactaaattatgtaatttttccaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtgcttcataga 22013363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 465
Target Start/End: Complemental strand, 39205913 - 39205860
Alignment:
Q  412 aattatatcattttctcatattattatctgtgtcgacgtgtcggtgtccgtatc 465  Q
    |||||||| ||||||||| ||||||| | ||||||||||||| ||||| |||||    
T  39205913 aattatatgattttctcaaattattagcagtgtcgacgtgtccgtgtctgtatc 39205860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 383 - 439
Target Start/End: Original strand, 18607094 - 18607150
Alignment:
Q  383 acaccgacacgacacctatgattatactaaattatatcattttctcatattattatc 439  Q
    |||| ||||||||||||||||||| | | |||||| | ||||||||| |||||||||    
T  18607094 acacagacacgacacctatgattacattgaattatgttattttctcaaattattatc 18607150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 7e-29; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 381 - 482
Target Start/End: Original strand, 23354647 - 23354748
Alignment:
Q  381 cgacaccgacacgacacctatgattatactaaattatatcattttctcatattattatctgtgtcgacgtgtcggtgtccgtatcttgtctggtatccgt 480  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||  | ||||||||||||| || |||| ||| |||||    
T  23354647 cgacaccgacacgacacctatgattacactaaattatatcattttctcaaattattatctgtgtcagcatgtcggtgtccgtgtcatgtccggtgtccgt 23354746  T
Q  481 gt 482  Q
    ||    
T  23354747 gt 23354748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 381 - 462
Target Start/End: Original strand, 23354990 - 23355071
Alignment:
Q  381 cgacaccgacacgacacctatgattatactaaattatatcattttctcatattattatctgtgtcgacgtgtcggtgtccgt 462  Q
    ||||||||||| |||||||||||||  |||||||||||||||||||||| |||||||||||||||  | |||||||||||||    
T  23354990 cgacaccgacatgacacctatgattgcactaaattatatcattttctcaaattattatctgtgtcagcatgtcggtgtccgt 23355071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 382 - 462
Target Start/End: Complemental strand, 25544544 - 25544466
Alignment:
Q  382 gacaccgacacgacacctatgattatactaaattatatcattttctcatattattatctgtgtcgacgtgtcggtgtccgt 462  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||  ||||||  ||||||||||||||    
T  25544544 gacaccgacacgacacctatgattacactgaattatatcattttctcaaattattatacgtgtcg--gtgtcggtgtccgt 25544466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 381 - 459
Target Start/End: Complemental strand, 37986843 - 37986765
Alignment:
Q  381 cgacaccgacacgacacctatgattatactaaattatatcattttctcatattattatctgtgtcgacgtgtcggtgtc 459  Q
    ||||||| |||||| ||||||||||| ||| || ||||||||||| ||| |||||||||||||||| |||||| |||||    
T  37986843 cgacaccaacacgatacctatgattacactcaaatatatcattttttcaaattattatctgtgtcggcgtgtcagtgtc 37986765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 382 - 439
Target Start/End: Complemental strand, 24011099 - 24011042
Alignment:
Q  382 gacaccgacacgacacctatgattatactaaattatatcattttctcatattattatc 439  Q
    ||||||||| ||||||||||||||| |||||||||| ||||||||||| |||||||||    
T  24011099 gacaccgacgcgacacctatgattacactaaattatgtcattttctcaaattattatc 24011042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 389 - 442
Target Start/End: Complemental strand, 38919262 - 38919209
Alignment:
Q  389 acacgacacctatgattatactaaattatatcattttctcatattattatctgt 442  Q
    |||||||||||||||||| |||||| |||| |||||||||| ||||||||||||    
T  38919262 acacgacacctatgattacactaaactataacattttctcaaattattatctgt 38919209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 403 - 495
Target Start/End: Original strand, 20539691 - 20539783
Alignment:
Q  403 attatactaaattatatcattttctcatattattatctgtgtcgacgtgtcggtgtccgtatcttgtctggtatccgtgtatgtgcttcatag 495  Q
    |||| |||||||||||| ||||| ||| ||||||| ||||||||||||||| |||||||| || ||||  || ||||| |  |||||||||||    
T  20539691 attacactaaattatatgattttttcaaattattagctgtgtcgacgtgtcagtgtccgtgtcgtgtccagtgtccgtatccgtgcttcatag 20539783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 381 - 464
Target Start/End: Complemental strand, 19574042 - 19573960
Alignment:
Q  381 cgacaccgacacgacacctatgattatactaaattatatcattttctcatattattatctgtgtcgacgtgtcggtgtccgtat 464  Q
    ||||||||||||| ||||||| |||| ||| |||||| | ||||||| | ||||||||| |||||| |||||| ||||||||||    
T  19574042 cgacaccgacacgccacctataattacactgaattatgttattttcttaaattattatcggtgtcggcgtgtc-gtgtccgtat 19573960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 446
Target Start/End: Original strand, 10535757 - 10535819
Alignment:
Q  384 caccgacacgacacctatgattatactaaattatatcattttctcatattattatctgtgtcg 446  Q
    |||| ||||||||| |||||||| ||| |||||| ||||||||||| ||||||||| ||||||    
T  10535757 caccaacacgacacttatgattacactgaattatgtcattttctcaaattattatcggtgtcg 10535819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 435
Target Start/End: Original strand, 11307999 - 11308053
Alignment:
Q  381 cgacaccgacacgacacctatgattatactaaattatatcattttctcatattat 435  Q
    |||||||||||||||||||||||||| ||| |||||| ||||||| ||| |||||    
T  11307999 cgacaccgacacgacacctatgattacactgaattatgtcattttttcaaattat 11308053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 474
Target Start/End: Original strand, 30298461 - 30298535
Alignment:
Q  400 atgattatactaaattatatcattttctcatattattatctgtgtcgacgtgtcggtgtccgtatcttgtctggt 474  Q
    ||||||| ||| |||||| ||||||| | | ||||||||| ||||||||||||||| || |||||| ||||||||    
T  30298461 atgattacactgaattatgtcattttattaaattattatcggtgtcgacgtgtcggcgttcgtatcgtgtctggt 30298535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 439
Target Start/End: Complemental strand, 12748743 - 12748690
Alignment:
Q  386 ccgacacgacacctatgattatactaaattatatcattttctcatattattatc 439  Q
    ||||||| ||||||||||||| ||| || ||| ||||||||||| |||||||||    
T  12748743 ccgacacaacacctatgattacactgaactatgtcattttctcaaattattatc 12748690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 384 - 428
Target Start/End: Complemental strand, 30394518 - 30394474
Alignment:
Q  384 caccgacacgacacctatgattatactaaattatatcattttctc 428  Q
    |||| ||| |||||||||||||||||| |||||| ||||||||||    
T  30394518 caccaacaggacacctatgattatactgaattatgtcattttctc 30394474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 382 - 446
Target Start/End: Complemental strand, 30563472 - 30563408
Alignment:
Q  382 gacaccgacacgacacctatgattatactaaattatatcattttctcatattattatctgtgtcg 446  Q
    ||||||||||| ||||||||  ||| | | |||||| ||||||||||| ||||||||| ||||||    
T  30563472 gacaccgacacaacacctatagttacattgaattatgtcattttctcaaattattatccgtgtcg 30563408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 392 - 440
Target Start/End: Original strand, 34006997 - 34007045
Alignment:
Q  392 cgacacctatgattatactaaattatatcattttctcatattattatct 440  Q
    ||||||||||||||| ||| |||||| ||| ||||||| ||||||||||    
T  34006997 cgacacctatgattacactgaattatgtcaatttctcaaattattatct 34007045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 320 - 398
Target Start/End: Complemental strand, 37419875 - 37419796
Alignment:
Q  320 acctatgaagcacagacacttattggattaagcgtgtccc-gtgtcggatacgcattgatgt-cgacaccgacacgacacc 398  Q
    ||||||||||||| ||||||  | |||||| ||||||||| |||||||| |||||| | ||| ||||||||||||||||||    
T  37419875 acctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgcatcg-tgtccgacaccgacacgacacc 37419796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 2e-26; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 322 - 495
Target Start/End: Complemental strand, 39820547 - 39820379
Alignment:
Q  322 ctatgaagcacagacacttattggattaagcgtgtcccgtgtcggatacgcattgatgtcgacaccgacacgacacctatgattatactaaattatatca 421  Q
    ||||||||||| ||||||| | |||||| ||||||||||||||||| |||| | | ||||     |||||||||||||||||||| ||||||||||||||    
T  39820547 ctatgaagcacggacacttctcggattaggcgtgtcccgtgtcggacacgcgtcggtgtc-----cgacacgacacctatgattacactaaattatatca 39820453  T
Q  422 ttttctcatattattatctgtgtcgacgtgtcggtgtccgtatcttgtctggtatccgtgtatgtgcttcatag 495  Q
    |||||||| ||||||||  | |||  |||||||||||| || || |||| ||| || ||||  |||||||||||    
T  39820452 ttttctcaaattattatacgggtcagcgtgtcggtgtctgtgtcgtgtccggtgtctgtgtccgtgcttcatag 39820379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 389 - 487
Target Start/End: Complemental strand, 3658203 - 3658105
Alignment:
Q  389 acacgacacctatgattatactaaattatatcattttctcatattattatctgtgtcgacgtgtcggtgtccgtatcttgtctggtatccgtgtatgtg 487  Q
    |||||||||||||||||| ||| || || || ||||||||| ||||||||| ||||||| |||||||||||| |||  ||||| |||||||||| ||||    
T  3658203 acacgacacctatgattacactgaactacattattttctcaaattattatccgtgtcgatgtgtcggtgtccatattgtgtctcgtatccgtgtttgtg 3658105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 322 - 439
Target Start/End: Original strand, 35431080 - 35431193
Alignment:
Q  322 ctatgaagcacagacacttattggattaagcgtgtcc-cgtgtcggatacgcattgatgtcgacaccgacacgacacctatgattatactaaattatatc 420  Q
    ||||||||||||||||||| |||||||| | ||||||  |||| ||||| |||| |||||     ||||||||||||||||||||| |||||| ||| ||    
T  35431080 ctatgaagcacagacactttttggattaggggtgtcctggtgttggatatgcatcgatgt-----ccgacacgacacctatgattacactaaaatatgtc 35431174  T
Q  421 attttctcatattattatc 439  Q
    ||||||||| |||||||||    
T  35431175 attttctcaaattattatc 35431193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 381 - 446
Target Start/End: Complemental strand, 13845298 - 13845233
Alignment:
Q  381 cgacaccgacacgacacctatgattatactaaattatatcattttctcatattattatctgtgtcg 446  Q
    |||||| |||||||||||||||||||  ||||||||||||||||||||| |||||||| |||||||    
T  13845298 cgacacagacacgacacctatgattactctaaattatatcattttctcaaattattatttgtgtcg 13845233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 381 - 487
Target Start/End: Complemental strand, 44067580 - 44067474
Alignment:
Q  381 cgacaccgacacgacacctatgattatactaaattatatcattttctcatattattatctgtgtcgacgtgtcggtgtccgtatcttgtctggtatccgt 480  Q
    ||||||||||||||||| ||| |||| |||  ||||| ||||||||||| ||||||||| |||||| |||||| ||||| || |  |||||||| |||||    
T  44067580 cgacaccgacacgacacttataattacactgtattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtcggtgtggtgtctggtgtccgt 44067481  T
Q  481 gtatgtg 487  Q
    || ||||    
T  44067480 gtctgtg 44067474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 386 - 450
Target Start/End: Complemental strand, 1676771 - 1676707
Alignment:
Q  386 ccgacacgacacctatgattatactaaattatatcattttctcatattattatctgtgtcgacgt 450  Q
    ||||||||||||||||||||| |||||| ||| |||||||| || ||||||||| ||||||||||    
T  1676771 ccgacacgacacctatgattacactaaaatatgtcattttcacaaattattatccgtgtcgacgt 1676707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 383 - 446
Target Start/End: Original strand, 13009490 - 13009553
Alignment:
Q  383 acaccgacacgacacctatgattatactaaattatatcattttctcatattattatctgtgtcg 446  Q
    ||||||||||||||| |||||||| ||||||||||||  |||||||| ||||||||| ||||||    
T  13009490 acaccgacacgacacttatgattacactaaattatattgttttctcaaattattatccgtgtcg 13009553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 381 - 459
Target Start/End: Original strand, 26915235 - 26915313
Alignment:
Q  381 cgacaccgacacgacacctatgattatactaaattatatcattttctcatattattatctgtgtcgacgtgtcggtgtc 459  Q
    ||||||||||||||||| | |||||| | |||||||| ||||||||||| | | ||||| ||||||||||||| |||||    
T  26915235 cgacaccgacacgacacttgtgattacattaaattatgtcattttctcaaaattttatccgtgtcgacgtgtccgtgtc 26915313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 392 - 495
Target Start/End: Original strand, 25192353 - 25192456
Alignment:
Q  392 cgacacctatgattatactaaattatatcattttctcatattattatctgtgtcgacgtgtcggtgtccgtatcttgtctggtatccgtgtatgtgcttc 491  Q
    |||||| ||| |||||||| |||||| ||| ||| ||| ||||||| |||||||| |||||| ||||||||||| |||| | | ||||| |  |||||||    
T  25192353 cgacacttataattatactgaattatgtcactttttcaaattattagctgtgtcggcgtgtcagtgtccgtatcgtgtccgatgtccgtattcgtgcttc 25192452  T
Q  492 atag 495  Q
    ||||    
T  25192453 atag 25192456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 383 - 440
Target Start/End: Complemental strand, 8017548 - 8017491
Alignment:
Q  383 acaccgacacgacacctatgattatactaaattatatcattttctcatattattatct 440  Q
    |||| ||||||||| ||||||||| ||| |||||| ||||||| ||||||||||||||    
T  8017548 acactgacacgacatctatgattacactcaattatgtcattttttcatattattatct 8017491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 453
Target Start/End: Complemental strand, 9936870 - 9936806
Alignment:
Q  389 acacgacacctatgattatactaaattatatcattttctcatattattatctgtgtcgacgtgtc 453  Q
    |||| |||| |||||||||| | |||||||||||||||| | |||||||||  ||||||||||||    
T  9936870 acacaacacatatgattatattgaattatatcattttcttaaattattatcgatgtcgacgtgtc 9936806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 438
Target Start/End: Complemental strand, 40064014 - 40063958
Alignment:
Q  382 gacaccgacacgacacctatgattatactaaattatatcattttctcatattattat 438  Q
    |||||||||||||| |||||||||| | | |||||| ||||||||||| ||||||||    
T  40064014 gacaccgacacgacgcctatgattacaatgaattatgtcattttctcaaattattat 40063958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 445
Target Start/End: Original strand, 30068028 - 30068087
Alignment:
Q  386 ccgacacgacacctatgattatactaaattatatcattttctcatattattatctgtgtc 445  Q
    ||||| || |||||| ||||||||| |||||| ||||||||||| ||||||||| |||||    
T  30068028 ccgactcggcacctacgattatactgaattatgtcattttctcaaattattatccgtgtc 30068087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 412 - 459
Target Start/End: Original strand, 34739087 - 34739134
Alignment:
Q  412 aattatatcattttctcatattattatctgtgtcgacgtgtcggtgtc 459  Q
    |||||| |||||||||||||||||||||  |||| |||||||||||||    
T  34739087 aattatgtcattttctcatattattatcgatgtcaacgtgtcggtgtc 34739134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 403 - 437
Target Start/End: Complemental strand, 7253613 - 7253579
Alignment:
Q  403 attatactaaattatatcattttctcatattatta 437  Q
    ||||||||||||||||| |||||||||||||||||    
T  7253613 attatactaaattatatgattttctcatattatta 7253579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 392 - 462
Target Start/End: Complemental strand, 34897138 - 34897068
Alignment:
Q  392 cgacacctatgattatactaaattatatcattttctcatattattatctgtgtcgacgtgtcggtgtccgt 462  Q
    |||||| ||| |||| ||| |||||| | ||||||||| ||||||| | ||||||||||||| ||||||||    
T  34897138 cgacacatataattacactgaattatgtgattttctcaaattattagcggtgtcgacgtgtctgtgtccgt 34897068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 465
Target Start/End: Original strand, 15816135 - 15816208
Alignment:
Q  392 cgacacctatgattatactaaattatatcattttctcatattattatctgtgtcgacgtgtcggtgtccgtatc 465  Q
    |||||| ||| |||| |||||||||| | ||||| ||| |||||||  ||||||| |||||| |||||||||||    
T  15816135 cgacacttataattacactaaattatgtgattttttcaaattattagttgtgtcggcgtgtcagtgtccgtatc 15816208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 403 - 459
Target Start/End: Original strand, 39954296 - 39954352
Alignment:
Q  403 attatactaaattatatcattttctcatattattatctgtgtcgacgtgtcggtgtc 459  Q
    |||| |||||||||| | ||||||||| ||||||| | |||||| ||||||||||||    
T  39954296 attacactaaattatgtgattttctcaaattattagcggtgtcggcgtgtcggtgtc 39954352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 431 - 471
Target Start/End: Original strand, 41838168 - 41838208
Alignment:
Q  431 attattatctgtgtcgacgtgtcggtgtccgtatcttgtct 471  Q
    ||||||| ||||||||||||||| ||||||||||| |||||    
T  41838168 attattagctgtgtcgacgtgtcagtgtccgtatcgtgtct 41838208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 7e-26; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 322 - 446
Target Start/End: Complemental strand, 23752018 - 23751899
Alignment:
Q  322 ctatgaagcacagacacttattggattaagcgtgtcccgtgtcggatacgcattgatgtcgacaccgacacgacacctatgattatactaaattatatca 421  Q
    ||||||||||||||||||||| |||||| |||||||||||||| || |||| | | ||||     |||||||||||||||||||| ||||||||||||||    
T  23752018 ctatgaagcacagacacttatcggattaggcgtgtcccgtgtctgacacgcgtcggtgtc-----cgacacgacacctatgattacactaaattatatca 23751924  T
Q  422 ttttctcatattattatctgtgtcg 446  Q
    |||| ||| ||||||||| ||||||    
T  23751923 ttttatcaaattattatccgtgtcg 23751899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 320 - 462
Target Start/End: Original strand, 4017727 - 4017870
Alignment:
Q  320 acctatgaagcacagacacttattggattaagcgtgtcccgtgtcggatacgcattgatgtc-gacaccgacacgacacctatgattatactaaattata 418  Q
    |||||||||||||  |||||| || ||||| |||||| ||||||| || || | | | |||| |||||| ||||||||| |||||||| |||||||||||    
T  4017727 acctatgaagcacgaacactttttagattaggcgtgttccgtgtcagacacacgtcggtgtccgacaccaacacgacacttatgattacactaaattata 4017826  T
Q  419 tcattttctcatattattatctgtgtcgacgtgtcggtgtccgt 462  Q
    || |||||||| ||||||||| |||||| |||||||||||||||    
T  4017827 tcgttttctcaaattattatccgtgtcggcgtgtcggtgtccgt 4017870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 322 - 438
Target Start/End: Original strand, 29812598 - 29812716
Alignment:
Q  322 ctatgaagcacagacacttattggattaagcgtgtcccgtgtcgga-tacg-cattgatgtcgacaccgacacgacacctatgattatactaaattatat 419  Q
    ||||||||||| ||||||| | |||||| ||||||||||||||||  | || ||  ||   |||||||||||||||||||||||||| ||||||||||||    
T  29812598 ctatgaagcacggacacttctcggattaggcgtgtcccgtgtcggtgtccgacaccgacaccgacaccgacacgacacctatgattacactaaattatat 29812697  T
Q  420 cattttctcatattattat 438  Q
    |||||||||| ||||||||    
T  29812698 cattttctcaaattattat 29812716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 381 - 481
Target Start/End: Complemental strand, 43250057 - 43249957
Alignment:
Q  381 cgacaccgacacgacacctatgattatactaaattatatcattttctcatattattatctgtgtcgacgtgtcggtgtccgtatcttgtctggtatccgt 480  Q
    ||||||||||||||||| ||| |||| |||  ||||| ||||||||||| ||||||||| |||||| |||||| |||||||| ||||||| ||| |||||    
T  43250057 cgacaccgacacgacacttataattacactgtattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtccgtgtcttgtccggtgtccgt 43249958  T
Q  481 g 481  Q
    |    
T  43249957 g 43249957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 381 - 453
Target Start/End: Complemental strand, 23930283 - 23930211
Alignment:
Q  381 cgacaccgacacgacacctatgattatactaaattatatcattttctcatattattatctgtgtcgacgtgtc 453  Q
    |||||||||||| ||||||||||||| ||| |||||| ||||||||||| |||| |||| ||||||| |||||    
T  23930283 cgacaccgacacaacacctatgattacactgaattatgtcattttctcaaattactatccgtgtcgatgtgtc 23930211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 381 - 446
Target Start/End: Original strand, 7133273 - 7133338
Alignment:
Q  381 cgacaccgacacgacacctatgattatactaaattatatcattttctcatattattatctgtgtcg 446  Q
    ||||||||||||  |||||||||||| ||| |||||| ||||||||||| ||||| ||||||||||    
T  7133273 cgacaccgacacaccacctatgattacactgaattatgtcattttctcaaattatcatctgtgtcg 7133338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 392 - 481
Target Start/End: Complemental strand, 19206103 - 19206014
Alignment:
Q  392 cgacacctatgattatactaaattatatcattttctcatattattatctgtgtcgacgtgtcggtgtccgtatcttgtctggtatccgtg 481  Q
    |||||| ||| |||||| | |||||| | ||||||||| ||||||| | |||||| ||||| ||||||||| || |||||||||||||||    
T  19206103 cgacacatataattataatgaattatgtgattttctcaaattattagcggtgtcggcgtgttggtgtccgtgtcgtgtctggtatccgtg 19206014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 389 - 446
Target Start/End: Complemental strand, 13427632 - 13427575
Alignment:
Q  389 acacgacacctatgattatactaaattatatcattttctcatattattatctgtgtcg 446  Q
    |||||||| |||||||||||||||||||| ||||||| ||| |||||| || ||||||    
T  13427632 acacgacatctatgattatactaaattatgtcattttttcaaattattttccgtgtcg 13427575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 381 - 454
Target Start/End: Original strand, 38804550 - 38804623
Alignment:
Q  381 cgacaccgacacgacacctatgattatactaaattatatcattttctcatattattatctgtgtcgacgtgtcg 454  Q
    ||||||| ||||||||||||||||||  ||  ||||| ||||||||| | ||||||||| |||||| |||||||    
T  38804550 cgacaccaacacgacacctatgattaccctggattatgtcattttctgaaattattatccgtgtcggcgtgtcg 38804623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 360 - 439
Target Start/End: Complemental strand, 5938558 - 5938478
Alignment:
Q  360 gtgtcggatacgcattgatgtc-gacaccgacacgacacctatgattatactaaattatatcattttctcatattattatc 439  Q
    |||||||| |||||| | |||| ||||||||||| |||||||| |||||||| |||||| | ||||| ||| |||||||||    
T  5938558 gtgtcggacacgcatcggtgtctgacaccgacacaacacctataattatactgaattatgttattttatcaaattattatc 5938478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 459
Target Start/End: Original strand, 22683758 - 22683826
Alignment:
Q  389 acacgacacctatgattatactaaattatatcattttctcatattattatctgtgtcgacgtgtcggtgtc 459  Q
    |||||||||||||||||  ||| ||||||||||| |||||| ||||||||| || |||  |||||||||||    
T  22683758 acacgacacctatgattgcactgaattatatcatattctcaaattattatccgtctcg--gtgtcggtgtc 22683826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 392 - 466
Target Start/End: Original strand, 38134412 - 38134486
Alignment:
Q  392 cgacacctatgattatactaaattatatcattttctcatattattatctgtgtcgacgtgtcggtgtccgtatct 466  Q
    |||||| |||||||| | | |||||| ||||||||||| ||||||||| ||||| || ||||  |||||||||||    
T  38134412 cgacacatatgattacattgaattatgtcattttctcaaattattatcggtgtcaacatgtccatgtccgtatct 38134486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 461
Target Start/End: Original strand, 17780078 - 17780159
Alignment:
Q  380 tcgacaccgacacgacacctatgattatactaaattatatcattttctcatattattatctgtgtcgacgtgtcggtgtccg 461  Q
    |||||||||||||||||||||| |||| |   |||||| ||||||||| | |||||||||  ||||  | ||||||||||||    
T  17780078 tcgacaccgacacgacacctattattacatagaattatgtcattttcttaaattattatccatgtcagcatgtcggtgtccg 17780159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 403 - 459
Target Start/End: Complemental strand, 5236028 - 5235972
Alignment:
Q  403 attatactaaattatatcattttctcatattattatctgtgtcgacgtgtcggtgtc 459  Q
    |||| |||||||||||| ||||||| | ||||||| | ||||||||||||| |||||    
T  5236028 attacactaaattatataattttcttaaattattagcggtgtcgacgtgtcagtgtc 5235972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 392 - 444
Target Start/End: Original strand, 18233604 - 18233656
Alignment:
Q  392 cgacacctatgattatactaaattatatcattttctcatattattatctgtgt 444  Q
    |||||||||| |||| ||| |||||| ||||||||||| |||| |||||||||    
T  18233604 cgacacctataattacactgaattatgtcattttctcaaattactatctgtgt 18233656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 412 - 460
Target Start/End: Original strand, 30516383 - 30516431
Alignment:
Q  412 aattatatcattttctcatattattatctgtgtcgacgtgtcggtgtcc 460  Q
    |||||||||||||||||| |||||| |  ||||||||||||| ||||||    
T  30516383 aattatatcattttctcaaattattgttagtgtcgacgtgtcagtgtcc 30516431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 7e-26; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 383 - 495
Target Start/End: Complemental strand, 6389805 - 6389693
Alignment:
Q  383 acaccgacacgacacctatgattatactaaattatatcattttctcatattattatctgtgtcgacgtgtcggtgtccgtatcttgtctggtatccgtgt 482  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||| |||||  |||||||| || |||| ||| || ||||    
T  6389805 acaccgacacgacacctatgattacactaaattatatcattttctcaaattattatccgtgtcggcgtgtgagtgtccgtgtcgtgtccggtgtctgtgt 6389706  T
Q  483 atgtgcttcatag 495  Q
      |||||||||||    
T  6389705 ccgtgcttcatag 6389693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 383 - 497
Target Start/End: Original strand, 2153884 - 2153998
Alignment:
Q  383 acaccgacacgacacctatgattatactaaattatatcattttctcatattattatctgtgtcgacgtgtcggtgtccgtatcttgtctggtatccgtgt 482  Q
    ||||| || |||||||||| |||| |||||||||||||||||||| | |||||| |  |||||| ||||||||||||||| || |||| | | |||||||    
T  2153884 acaccaacgcgacacctataattacactaaattatatcattttcttaaattattgttcgtgtcggcgtgtcggtgtccgtgtcatgtccgatgtccgtgt 2153983  T
Q  483 atgtgcttcatagat 497  Q
     ||||||||||||||    
T  2153984 ttgtgcttcatagat 2153998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 397 - 459
Target Start/End: Complemental strand, 7625170 - 7625108
Alignment:
Q  397 cctatgattatactaaattatatcattttctcatattattatctgtgtcgacgtgtcggtgtc 459  Q
    ||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  7625170 cctataattatactaaattatatcattttctcaaattattatccgtgtcgacgtgtcggtgtc 7625108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 381 - 459
Target Start/End: Original strand, 17168458 - 17168536
Alignment:
Q  381 cgacaccgacacgacacctatgattatactaaattatatcattttctcatattattatctgtgtcgacgtgtcggtgtc 459  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||| |||| | |||||| |||||    
T  17168458 cgacaccgacacgacacctattattacactaaattatatcattttctcaaattattatcagtgttggcgtgtcagtgtc 17168536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 322 - 445
Target Start/End: Complemental strand, 34446690 - 34446565
Alignment:
Q  322 ctatgaagcacagacacttattggattaagcgtgtccc-gtgtcggatacgcattgatgtcg-acaccgacacgacacctatgattatactaaattatat 419  Q
    ||||||||||| ||||||  |||||||| | ||||||| ||||| ||||||| | | ||| | |||||||||||||||||||||||| ||| |||||| |    
T  34446690 ctatgaagcacggacactccttggattaggtgtgtcccagtgtcagatacgcgtcggtgttggacaccgacacgacacctatgattacactgaattatgt 34446591  T
Q  420 cattttctcatattattatctgtgtc 445  Q
    |||||||||| ||||||||| |||||    
T  34446590 cattttctcaaattattatccgtgtc 34446565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 386 - 459
Target Start/End: Original strand, 12086345 - 12086418
Alignment:
Q  386 ccgacacgacacctatgattatactaaattatatcattttctcatattattatctgtgtcgacgtgtcggtgtc 459  Q
    ||||||||||||||||||||| ||| |||||| ||||| ||||| ||||||||| |||||||||||| ||||||    
T  12086345 ccgacacgacacctatgattaaactgaattatgtcattatctcaaattattatccgtgtcgacgtgtaggtgtc 12086418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 400 - 460
Target Start/End: Original strand, 13211295 - 13211355
Alignment:
Q  400 atgattatactaaattatatcattttctcatattattatctgtgtcgacgtgtcggtgtcc 460  Q
    ||||||||| |||||||| ||||||||||| |||||||||  |||||||||||||||||||    
T  13211295 atgattatattaaattatgtcattttctcaaattattatcaatgtcgacgtgtcggtgtcc 13211355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 382 - 444
Target Start/End: Original strand, 19602177 - 19602239
Alignment:
Q  382 gacaccgacacgacacctatgattatactaaattatatcattttctcatattattatctgtgt 444  Q
    ||||||||||| | ||||||||||| ||| |||||||||||||||||| ||||||||| ||||    
T  19602177 gacaccgacacaatacctatgattacactgaattatatcattttctcaaattattatcagtgt 19602239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 381 - 439
Target Start/End: Complemental strand, 26247490 - 26247432
Alignment:
Q  381 cgacaccgacacgacacctatgattatactaaattatatcattttctcatattattatc 439  Q
    |||||||||||||| |||||||||||||||||| ||| ||||||||| | |||||||||    
T  26247490 cgacaccgacacgaaacctatgattatactaaaatatgtcattttcttaaattattatc 26247432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 392 - 476
Target Start/End: Complemental strand, 7086848 - 7086764
Alignment:
Q  392 cgacacctatgattatactaaattatatcattttctcatattattatctgtgtcgacgtgtcggtgtccgtatcttgtctggtat 476  Q
    |||||| ||| |||| |||||||||| | ||||||||| ||||||| | ||| ||||||||||||||| || || ||||||||||    
T  7086848 cgacacatataattacactaaattatgtgattttctcaaattattagcagtgccgacgtgtcggtgtctgtgtcgtgtctggtat 7086764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 390 - 461
Target Start/End: Complemental strand, 6299567 - 6299496
Alignment:
Q  390 cacgacacctatgattatactaaattatatcattttctcatattattatctgtgtcgacgtgtcggtgtccg 461  Q
    |||||||||||| |||| | | |||||||||||||||||| |||||||||  ||||| ||||| ||||||||    
T  6299567 cacgacacctatcattacattgaattatatcattttctcaaattattatccatgtcggcgtgttggtgtccg 6299496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 390 - 461
Target Start/End: Complemental strand, 6306377 - 6306306
Alignment:
Q  390 cacgacacctatgattatactaaattatatcattttctcatattattatctgtgtcgacgtgtcggtgtccg 461  Q
    |||||||||||| |||| | | |||||||||||||||||| |||||||||  ||||| ||||| ||||||||    
T  6306377 cacgacacctatcattacattgaattatatcattttctcaaattattatccatgtcggcgtgttggtgtccg 6306306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 482
Target Start/End: Complemental strand, 7938169 - 7938079
Alignment:
Q  392 cgacacctatgattatactaaattatatcattttctcatattattatctgtgtcgacgtgtcggtgtccgtatcttgtctggtatccgtgt 482  Q
    |||||| ||| |||| |||||||||||| ||||| ||| ||||||| |||||||| |||||| |||||| | || |||| ||| |||||||    
T  7938169 cgacacttataattacactaaattatatgattttttcaaattattagctgtgtcggcgtgtcagtgtccatgtcgtgtccggtgtccgtgt 7938079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 388 - 445
Target Start/End: Original strand, 12235521 - 12235578
Alignment:
Q  388 gacacgacacctatgattatactaaattatatcattttctcatattattatctgtgtc 445  Q
    ||||||||||||||||||| ||| |||||| ||||||||||  ||||||||| |||||    
T  12235521 gacacgacacctatgattacactgaattatgtcattttctctaattattatccgtgtc 12235578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 452
Target Start/End: Original strand, 17422281 - 17422321
Alignment:
Q  412 aattatatcattttctcatattattatctgtgtcgacgtgt 452  Q
    |||||||||||||||||| ||||||||| ||||||||||||    
T  17422281 aattatatcattttctcaaattattatcggtgtcgacgtgt 17422321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 474
Target Start/End: Original strand, 8805589 - 8805660
Alignment:
Q  403 attatactaaattatatcattttctcatattattatctgtgtcgacgtgtcggtgtccgtatcttgtctggt 474  Q
    |||| |||||||||| | ||||||||| ||||||| | ||| ||||||||||||||| || || ||||||||    
T  8805589 attacactaaattatgtgattttctcaaattattagcagtgccgacgtgtcggtgtctgtgtcgtgtctggt 8805660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 462
Target Start/End: Original strand, 10760874 - 10760917
Alignment:
Q  419 tcattttctcatattattatctgtgtcgacgtgtcggtgtccgt 462  Q
    ||||||||||| ||||||||| ||||||||||||| ||||||||    
T  10760874 tcattttctcaaattattatcagtgtcgacgtgtcagtgtccgt 10760917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 437
Target Start/End: Original strand, 30781290 - 30781345
Alignment:
Q  382 gacaccgacacgacacctatgattatactaaattatatcattttctcatattatta 437  Q
    |||||||||| |||||||||||||| | | |||||| ||||||||||| |||||||    
T  30781290 gacaccgacatgacacctatgattacaattaattatgtcattttctcaaattatta 30781345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 412 - 482
Target Start/End: Original strand, 426540 - 426610
Alignment:
Q  412 aattatatcattttctcatattattatctgtgtcgacgtgtcggtgtccgtatcttgtctggtatccgtgt 482  Q
    |||||| | ||||| ||| ||||||| |||||||| |||||| |||||||| || |||| |||||||||||    
T  426540 aattatgtgattttttcaaattattaactgtgtcggcgtgtcagtgtccgtgtcgtgtccggtatccgtgt 426610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 458
Target Start/End: Original strand, 9024183 - 9024248
Alignment:
Q  393 gacacctatgattatactaaattatatcattttctcatattattatctgtgtcgacgtgtcggtgt 458  Q
    ||||| |||||||| | | |||||| ||||||||||| ||||| || |||||||||||||| ||||    
T  9024183 gacacatatgattacattgaattatgtcattttctcaaattatcatttgtgtcgacgtgtccgtgt 9024248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 480
Target Start/End: Complemental strand, 33303685 - 33303624
Alignment:
Q  419 tcattttctcatattattatctgtgtcgacgtgtcggtgtccgtatcttgtctggtatccgt 480  Q
    ||||||| ||| ||||||||  ||||||| ||||| ||||||||||| |||||||| |||||    
T  33303685 tcattttttcaaattattattagtgtcgatgtgtcagtgtccgtatcgtgtctggtgtccgt 33303624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 320 - 367
Target Start/End: Original strand, 12868614 - 12868662
Alignment:
Q  320 acctatgaagcacagacacttattggattaagcgtg-tcccgtgtcgga 367  Q
    ||||||||||||| ||||||||| |||||| ||||| ||||||||||||    
T  12868614 acctatgaagcaccgacacttatcggattaggcgtgttcccgtgtcgga 12868662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 322 - 444
Target Start/End: Original strand, 3144587 - 3144710
Alignment:
Q  322 ctatgaagcacagacacttattggattaagcgtgtcccgtgtcggatacgcattgatgtc-gacaccgacacgacacctatgattatactaaattatatc 420  Q
    ||||||||||| ||||||| | |||||| | ||||| ||||| ||| |||| ||| |||| ||||||||||||||||||||||||| |||||||||||||    
T  3144587 ctatgaagcacggacacttctcggattaggtgtgtctcgtgttggacacgcgttggtgtctgacaccgacacgacacctatgattacactaaattatatc 3144686  T
Q  421 attttctcatattattatctgtgt 444  Q
    ||||||| | ||||||||| ||||    
T  3144687 attttctgaaattattatccgtgt 3144710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 317 - 487
Target Start/End: Complemental strand, 24343637 - 24343465
Alignment:
Q  317 atgacctatgaagcacagacacttattggattaagcgtgtcccg-tgtcggatacgcattgatgtcg-acaccgacacgacacctatgattatactaaat 414  Q
    |||| ||||||||||| ||||||  |  || || |||||||||| ||||||| |||| | | ||||| ||||||||||||||||||| |||| ||| |||    
T  24343637 atgatctatgaagcacggacactcctcagaataggcgtgtcccggtgtcggacacgcgtcggtgtcggacaccgacacgacacctataattacactgaat 24343538  T
Q  415 tatatcattttctcatattattatctgtgtcgacgtgtcggtgtccgtatcttgtctggtatccgtgtatgtg 487  Q
    ||| | ||||||||| ||||||||| |||||| |||||||| |||||| || |||| ||| ||||||| ||||    
T  24343537 tatgtaattttctcaaattattatccgtgtcggcgtgtcggcgtccgtgtcgtgtccggtgtccgtgtctgtg 24343465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 380 - 458
Target Start/End: Original strand, 20743272 - 20743350
Alignment:
Q  380 tcgacaccgacacgacacctatgattatactaaattatatcattttctcatattattatctgtgtcgacgtgtcggtgt 458  Q
    ||||||||||||| ||||||||||||| ||| |||||| ||||||||||| ||||||||| |||||| |||||| ||||    
T  20743272 tcgacaccgacacaacacctatgattacactgaattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgt 20743350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 381 - 454
Target Start/End: Complemental strand, 6274008 - 6273935
Alignment:
Q  381 cgacaccgacacgacacctatgattatactaaattatatcattttctcatattattatctgtgtcgacgtgtcg 454  Q
    |||||||||||||||  |||| |||| |||||||||||||||||||||| |||||| ||||||||  |||||||    
T  6274008 cgacaccgacacgacgactataattacactaaattatatcattttctcaaattattgtctgtgtcagcgtgtcg 6273935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 396 - 472
Target Start/End: Complemental strand, 7012115 - 7012039
Alignment:
Q  396 acctatgattatactaaattatatcattttctcatattattatctgtgtcgacgtgtcggtgtccgtatcttgtctg 472  Q
    ||||||||| | ||| |||||| ||||||||||| ||||||||| |||||| ||||||||||||||| || ||||||    
T  7012115 acctatgatcacactgaattatgtcattttctcaaattattatcggtgtcggcgtgtcggtgtccgtgtcctgtctg 7012039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 425
Target Start/End: Complemental strand, 23386210 - 23386166
Alignment:
Q  381 cgacaccgacacgacacctatgattatactaaattatatcatttt 425  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||    
T  23386210 cgacaccgacatgacacctatgattacactaaattatatcatttt 23386166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 383 - 447
Target Start/End: Original strand, 31243545 - 31243609
Alignment:
Q  383 acaccgacacgacacctatgattatactaaattatatcattttctcatattattatctgtgtcga 447  Q
    ||||||||| |||||||||||||| ||| |||||| ||||||||||| ||||||||  |||||||    
T  31243545 acaccgacatgacacctatgattacactgaattatgtcattttctcaaattattataagtgtcga 31243609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 403 - 470
Target Start/End: Original strand, 16303283 - 16303350
Alignment:
Q  403 attatactaaattatatcattttctcatattattatctgtgtcgacgtgtcggtgtccgtatcttgtc 470  Q
    |||| |||||||||||||||||| ||| | |||||||| ||||| |||||| ||||||||||| ||||    
T  16303283 attacactaaattatatcattttttcaaaatattatctttgtcggcgtgtcagtgtccgtatcgtgtc 16303350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 422 - 482
Target Start/End: Complemental strand, 20633508 - 20633448
Alignment:
Q  422 ttttctcatattattatctgtgtcgacgtgtcggtgtccgtatcttgtctggtatccgtgt 482  Q
    |||| ||| ||||||| | ||||||||||||| ||||||||||| |||||||| |||||||    
T  20633508 ttttttcaaattattagcggtgtcgacgtgtcagtgtccgtatcgtgtctggtgtccgtgt 20633448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 396 - 436
Target Start/End: Original strand, 49659533 - 49659573
Alignment:
Q  396 acctatgattatactaaattatatcattttctcatattatt 436  Q
    ||||||||||| |||||||||||||||||||||| ||||||    
T  49659533 acctatgattacactaaattatatcattttctcaaattatt 49659573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 320 - 459
Target Start/End: Original strand, 53381528 - 53381665
Alignment:
Q  320 acctatgaagcacagacacttattggattaagcgtgtcccg-tgtcggatacgcattgatgtc-gacaccgacacgacacctatgattatactaaattat 417  Q
    ||||||||||||| ||||||  | |||||| | |||||||| |||||||||||| |   |||| |||||||||||||| ||||| |||| ||| |||       
T  53381528 acctatgaagcacggacactcctcggattaggtgtgtcccggtgtcggatacgcgtcagtgtccgacaccgacacgacgcctataattacactgaat--- 53381624  T
Q  418 atcattttctcatattattatctgtgtcgacgtgtcggtgtc 459  Q
     ||||||||| | ||||||||| |||||| ||||| ||||||    
T  53381625 -tcattttcttaaattattatcggtgtcggcgtgtgggtgtc 53381665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 389 - 495
Target Start/End: Original strand, 19230312 - 19230418
Alignment:
Q  389 acacgacacctatgattatactaaattatatcattttctcatattattatctgtgtcgacgtgtcggtgtccgtatcttgtctggtatccgtgtatgtgc 488  Q
    ||||||||||||| |||| | | |||||| | ||||||||| |||||||||| |||| | ||||| ||||  ||||  |||||||| ||| |||  ||||    
T  19230312 acacgacacctataattacattgaattatgttattttctcaaattattatctatgtccatgtgtcagtgtttgtattgtgtctggtgtccatgttcgtgc 19230411  T
Q  489 ttcatag 495  Q
    |||||||    
T  19230412 ttcatag 19230418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 460
Target Start/End: Complemental strand, 7424716 - 7424655
Alignment:
Q  399 tatgattatactaaattatatcattttctcatattattatctgtgtcgacgtgtcggtgtcc 460  Q
    |||||||| ||| |||||||| ||||||| | ||||||||| |||| || ||||||||||||    
T  7424716 tatgattacactcaattatattattttcttaaattattatcggtgttgatgtgtcggtgtcc 7424655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 458
Target Start/End: Original strand, 34515881 - 34515946
Alignment:
Q  393 gacacctatgattatactaaattatatcattttctcatattattatctgtgtcgacgtgtcggtgt 458  Q
    |||||||||| ||| ||| |||||| |||||||||   ||||||||| ||||||||||||| ||||    
T  34515881 gacacctatgtttacactgaattatgtcattttcttgaattattatccgtgtcgacgtgtcagtgt 34515946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 466
Target Start/End: Original strand, 56488517 - 56488590
Alignment:
Q  393 gacacctatgattatactaaattatatcattttctcatattattatctgtgtcgacgtgtcggtgtccgtatct 466  Q
    ||||| ||||||||  || |||||||| ||||||||| ||| ||| | ||||| |||||||||||||| |||||    
T  56488517 gacacatatgattaccctgaattatatgattttctcaaattgttagcggtgtcaacgtgtcggtgtccatatct 56488590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 431 - 471
Target Start/End: Original strand, 11651179 - 11651219
Alignment:
Q  431 attattatctgtgtcgacgtgtcggtgtccgtatcttgtct 471  Q
    ||||||| ||||||||||||||| ||||||||||| |||||    
T  11651179 attattagctgtgtcgacgtgtcagtgtccgtatcgtgtct 11651219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 386 - 494
Target Start/End: Complemental strand, 12084279 - 12084171
Alignment:
Q  386 ccgacacgacacctatgattatactaaattatatcattttctcatattattatctgtgtcgacgtgtcggtgtccgtatcttgtctggtatccgtgtatg 485  Q
    |||||||||||||||| |||||| | |||| ||  ||||||||| ||||||||| |||| | ||||| | | ||||| || ||  |||| | ||||| ||    
T  12084279 ccgacacgacacctataattatattgaattttactattttctcaaattattatcggtgttggcgtgttgatatccgtttcgtgattggtgttcgtgtttg 12084180  T
Q  486 tgcttcata 494  Q
    |||||||||    
T  12084179 tgcttcata 12084171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 6e-23; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 345 - 459
Target Start/End: Original strand, 14223811 - 14223926
Alignment:
Q  345 gattaagcgtgtcccgtgtcggatacgcattgatgtcg-acaccgacacgacacctatgattatactaaattatatcattttctcatattattatctgtg 443  Q
    ||||| ||||||||| ||||||| |||  | | ||||| ||||||||||||||| ||||| || ||||||||||||| |||||||| |||||||||||||    
T  14223811 gattaggcgtgtcccatgtcggacacgtgtcggtgtcggacaccgacacgacacttatgaatacactaaattatatcgttttctcaaattattatctgtg 14223910  T
Q  444 tcgacgtgtcggtgtc 459  Q
    ||| ||||||||||||    
T  14223911 tcggcgtgtcggtgtc 14223926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 323 - 454
Target Start/End: Complemental strand, 15864950 - 15864824
Alignment:
Q  323 tatgaagcacagacacttattggattaagcgtgtcccgtgtcggatacgcattgatgtcgacaccgacacgacacctatgattatactaaattatatcat 422  Q
    |||||||||| ||||||  |||||||| |||||||||||||| || |||  | | ||||     |||||||||||||||||||| |||||||||||||||    
T  15864950 tatgaagcacggacactctttggattaggcgtgtcccgtgtcagacacgtgtcggtgtc-----cgacacgacacctatgattacactaaattatatcat 15864856  T
Q  423 tttctcatattattatctgtgtcgacgtgtcg 454  Q
    ||| ||| ||||||||| |||||| |||||||    
T  15864855 tttttcaaattattatccgtgtcggcgtgtcg 15864824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 322 - 453
Target Start/End: Complemental strand, 25074914 - 25074781
Alignment:
Q  322 ctatgaagcacagacacttattggattaagcgtgtccc-gtgtcggatacgcattgatgtc-gacaccgacacgacacctatgattatactaaattatat 419  Q
    |||||||||||  |||||  | |||||| | ||||||| |||||||| |||| ||| |||| ||||||||||| || |||||||||| ||| |||||| |    
T  25074914 ctatgaagcacgaacactcctcggattaggtgtgtcccagtgtcggacacgcgttggtgtcagacaccgacacaacgcctatgattacactcaattatgt 25074815  T
Q  420 cattttctcatattattatctgtgtcgacgtgtc 453  Q
    |||||||||| ||||||||| |||||| ||||||    
T  25074814 cattttctcaaattattatcggtgtcggcgtgtc 25074781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 386 - 487
Target Start/End: Original strand, 24205041 - 24205142
Alignment:
Q  386 ccgacacgacacctatgattatactaaattatatcattttctcatattattatctgtgtcgacgtgtcggtgtccgtatcttgtctggtatccgtgtatg 485  Q
    |||||||||||| ||| |||| |||  ||||| ||||||||||| ||||||||| |||||| |||||| |||||||| || |||| ||| ||||||| ||    
T  24205041 ccgacacgacacttataattacactgtattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgtctg 24205140  T
Q  486 tg 487  Q
    ||    
T  24205141 tg 24205142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 381 - 444
Target Start/End: Complemental strand, 27903696 - 27903633
Alignment:
Q  381 cgacaccgacacgacacctatgattatactaaattatatcattttctcatattattatctgtgt 444  Q
    |||||||||||| |||| |||||||| | ||||||||||| |||||||| ||||||||||||||    
T  27903696 cgacaccgacacaacacttatgattacattaaattatatcgttttctcaaattattatctgtgt 27903633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 381 - 438
Target Start/End: Complemental strand, 25892524 - 25892467
Alignment:
Q  381 cgacaccgacacgacacctatgattatactaaattatatcattttctcatattattat 438  Q
    |||||| ||||||||||||||||||| ||| |||||||||||||||| | ||||||||    
T  25892524 cgacactgacacgacacctatgattacactgaattatatcattttcttaaattattat 25892467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 381 - 444
Target Start/End: Original strand, 12704652 - 12704715
Alignment:
Q  381 cgacaccgacacgacacctatgattatactaaattatatcattttctcatattattatctgtgt 444  Q
    |||||||||||||||||||||||||| | | |||||| ||||||| ||| ||||||||| ||||    
T  12704652 cgacaccgacacgacacctatgattacattgaattatgtcattttttcaaattattatccgtgt 12704715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 383 - 474
Target Start/End: Original strand, 25652028 - 25652119
Alignment:
Q  383 acaccgacacgacacctatgattatactaaattatatcattttctcatattattatctgtgtcgacgtgtcggtgtccgtatcttgtctggt 474  Q
    |||| ||||| |||||||| | || ||| |||||||||||||||||| ||||||||| |||| | |||||  |||||||| || ||||||||    
T  25652028 acactgacacaacacctataactacactgaattatatcattttctcaaattattatccgtgttggcgtgttagtgtccgtgtcgtgtctggt 25652119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 389 - 447
Target Start/End: Complemental strand, 34189483 - 34189425
Alignment:
Q  389 acacgacacctatgattatactaaattatatcattttctcatattattatctgtgtcga 447  Q
    |||||||||||| ||||| ||| || ||| ||||||||||| |||||||||||||||||    
T  34189483 acacgacacctacgattacactgaaatatgtcattttctcaaattattatctgtgtcga 34189425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 439
Target Start/End: Complemental strand, 52369839 - 52369781
Alignment:
Q  381 cgacaccgacacgacacctatgattatactaaattatatcattttctcatattattatc 439  Q
    |||||||||||||||||||||||||| | | |||||| | ||||||||| |||||||||    
T  52369839 cgacaccgacacgacacctatgattacattgaattatgtaattttctcaaattattatc 52369781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 322 - 454
Target Start/End: Complemental strand, 8903554 - 8903423
Alignment:
Q  322 ctatgaagcacagacacttattggattaagcgtgtcccgtgtcggatacgcattgatgtc-gacaccgacacgacacctatgattatactaaattatatc 420  Q
    |||||||||||  |||||  | |||||| | |||||||| |||||| |||||| | |||| | || ||||||||||||||| |||| ||||||| || ||    
T  8903554 ctatgaagcacgaacactcctcggattaggtgtgtcccg-gtcggacacgcataggtgtccggcatcgacacgacacctataattacactaaat-atgtc 8903457  T
Q  421 attttctcatattattatctgtgtcgacgtgtcg 454  Q
    ||||||||| | ||||||| |||||| |||||||    
T  8903456 attttctcaaaatattatccgtgtcggcgtgtcg 8903423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 322 - 444
Target Start/End: Complemental strand, 21211413 - 21211289
Alignment:
Q  322 ctatgaagcacagacacttattggattaagcgtgtccc-gtgtcggatacgcattgatgtcga-caccgacacgacacctatgattatactaaattatat 419  Q
    |||||||||||| |||||  | |||||| | ||||||| |||||||| |||| | | |||||| ||||||||||||||| || |||| ||| || ||| |    
T  21211413 ctatgaagcacaaacactcctcggattaggagtgtcccagtgtcggacacgcgtcggtgtcgaacaccgacacgacacccataattacactgaactatgt 21211314  T
Q  420 cattttctcatattattatctgtgt 444  Q
     ||||||||| ||||||||| ||||    
T  21211313 aattttctcaaattattatccgtgt 21211289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 444
Target Start/End: Complemental strand, 25326490 - 25326427
Alignment:
Q  381 cgacaccgacacgacacctatgattatactaaattatatcattttctcatattattatctgtgt 444  Q
    ||||||| |||||||| |||| |||| |||||||||||| ||||| | | ||||||||||||||    
T  25326490 cgacaccaacacgacatctataattacactaaattatattatttttttaaattattatctgtgt 25326427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 388 - 438
Target Start/End: Original strand, 3730167 - 3730217
Alignment:
Q  388 gacacgacacctatgattatactaaattatatcattttctcatattattat 438  Q
    ||||||||||||||||||| ||| |||||| ||||| ||||| ||||||||    
T  3730167 gacacgacacctatgattacactgaattatgtcattatctcaaattattat 3730217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 392 - 458
Target Start/End: Complemental strand, 20691372 - 20691306
Alignment:
Q  392 cgacacctatgattatactaaattatatcattttctcatattattatctgtgtcgacgtgtcggtgt 458  Q
    |||||| |||||||| ||| |||||| ||||||||||| ||||||||| || || ||||||| ||||    
T  20691372 cgacacatatgattacactgaattatgtcattttctcaaattattatcagtttctacgtgtcagtgt 20691306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 381 - 459
Target Start/End: Original strand, 41319305 - 41319383
Alignment:
Q  381 cgacaccgacacgacacctatgattatactaaattatatcattttctcatattattatctgtgtcgacgtgtcggtgtc 459  Q
    ||||||||||||||||| ||  |||| | | |||||| ||||||| ||| ||||||||  ||||||||||||| |||||    
T  41319305 cgacaccgacacgacacatacaattacattgaattatgtcattttttcaaattattattggtgtcgacgtgtccgtgtc 41319383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 465
Target Start/End: Original strand, 23870585 - 23870638
Alignment:
Q  412 aattatatcattttctcatattattatctgtgtcgacgtgtcggtgtccgtatc 465  Q
    |||||||| ||||| ||| ||||||| | ||||||||||||| |||||||||||    
T  23870585 aattatatgattttttcaaattattagcggtgtcgacgtgtccgtgtccgtatc 23870638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 381 - 429
Target Start/End: Complemental strand, 21367341 - 21367293
Alignment:
Q  381 cgacaccgacacgacacctatgattatactaaattatatcattttctca 429  Q
    |||||||||||| ||| | ||||||| |||||||||| |||||||||||    
T  21367341 cgacaccgacacaacaaccatgattacactaaattatgtcattttctca 21367293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0598 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 385 - 462
Target Start/End: Original strand, 8052 - 8129
Alignment:
Q  385 accgacacgacacctatgattatactaaattatatcattttctcatattattatctgtgtcgacgtgtcggtgtccgt 462  Q
    |||||||||| ||||||| ||| ||| |||||| ||||||||||| ||||||||| || |||||||||||||||||||    
T  8052 accgacacgatacctatgtttacactgaattatgtcattttctcaaattattatccgtatcgacgtgtcggtgtccgt 8129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 381 - 445
Target Start/End: Original strand, 42004942 - 42005006
Alignment:
Q  381 cgacaccgacacgacacctatgattatactaaattatatcattttctcatattattatctgtgtc 445  Q
    |||||||||||| ||||||||||||| |||||||||| ||||||||||| ||||||||| |||||    
T  42004942 cgacaccgacacaacacctatgattacactaaattatgtcattttctcaaattattatccgtgtc 42005006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 381 - 444
Target Start/End: Original strand, 6936395 - 6936458
Alignment:
Q  381 cgacaccgacacgacacctatgattatactaaattatatcattttctcatattattatctgtgt 444  Q
    |||||| ||||||||||||||||||| ||| |||||| ||||||||||| ||||||||| ||||    
T  6936395 cgacacagacacgacacctatgattacacttaattatgtcattttctcagattattatccgtgt 6936458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 387 - 446
Target Start/End: Complemental strand, 6574047 - 6573988
Alignment:
Q  387 cgacacgacacctatgattatactaaattatatcattttctcatattattatctgtgtcg 446  Q
    |||||| ||||||||||||| |||||||||||||||| ||||| ||||| ||| ||||||    
T  6574047 cgacacaacacctatgattacactaaattatatcattgtctcaaattatcatccgtgtcg 6573988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 389 - 461
Target Start/End: Original strand, 48415728 - 48415801
Alignment:
Q  389 acacgacacctatgattatactaaattatatca-ttttctcatattattatctgtgtcgacgtgtcggtgtccg 461  Q
    |||||||| ||||||||| |||||||||||||| |||| | | ||||||||| |||||| ||||||| ||||||    
T  48415728 acacgacatctatgattacactaaattatatcatttttttaaaattattatccgtgtcggcgtgtcgttgtccg 48415801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 459
Target Start/End: Original strand, 22794080 - 22794151
Alignment:
Q  388 gacacgacacctatgattatactaaattatatcattttctcatattattatctgtgtcgacgtgtcggtgtc 459  Q
    |||||||||||||| |||| |||  ||||| ||||||| ||| ||||||||| |||| |||||||| |||||    
T  22794080 gacacgacacctataattacactgtattatgtcattttttcaaattattatccgtgttgacgtgtcagtgtc 22794151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 459
Target Start/End: Original strand, 22907345 - 22907412
Alignment:
Q  392 cgacacctatgattatactaaattatatcattttctcatattattatctgtgtcgacgtgtcggtgtc 459  Q
    |||||| ||| ||||||| ||||||||| ||||||||| ||||||| | | ||||||||||| |||||    
T  22907345 cgacacttataattataccaaattatataattttctcaaattattaacggcgtcgacgtgtctgtgtc 22907412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 412 - 459
Target Start/End: Original strand, 26462671 - 26462718
Alignment:
Q  412 aattatatcattttctcatattattatctgtgtcgacgtgtcggtgtc 459  Q
    |||||| ||||||||| | ||||||||| |||||||||||||||||||    
T  26462671 aattatttcattttcttaaattattatcagtgtcgacgtgtcggtgtc 26462718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 446
Target Start/End: Original strand, 39101179 - 39101242
Alignment:
Q  383 acaccgacacgacacctatgattatactaaattatatcattttctcatattattatctgtgtcg 446  Q
    ||||||| ||||||||||| |||| ||| |||||| | ||||||||| |||||||| |||||||    
T  39101179 acaccgaaacgacacctataattacacttaattatgttattttctcaaattattatatgtgtcg 39101242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 462
Target Start/End: Original strand, 46348400 - 46348459
Alignment:
Q  403 attatactaaattatatcattttctcatattattatctgtgtcgacgtgtcggtgtccgt 462  Q
    |||| |||||||||||| ||||| ||| ||||||| |||||||| |||||| ||||||||    
T  46348400 attacactaaattatatgattttttcaaattattagctgtgtcggcgtgtcagtgtccgt 46348459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 392 - 446
Target Start/End: Complemental strand, 373100 - 373046
Alignment:
Q  392 cgacacctatgattatactaaattatatcattttctcatattattatctgtgtcg 446  Q
    |||||| |||||||| ||||||| || ||||||||||| |||||||||| |||||    
T  373100 cgacacatatgattaaactaaatcatgtcattttctcaaattattatctttgtcg 373046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 392 - 437
Target Start/End: Original strand, 12040688 - 12040734
Alignment:
Q  392 cgacacctatgattatact-aaattatatcattttctcatattatta 437  Q
    ||||||||||||||||||| ||||||||||||||||| | |||||||    
T  12040688 cgacacctatgattatactgaaattatatcattttcttaaattatta 12040734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 445
Target Start/End: Original strand, 11412774 - 11412827
Alignment:
Q  392 cgacacctatgattatactaaattatatcattttctcatattattatctgtgtc 445  Q
    ||||||||||||| | | | |||||| ||||||||||||||||||||| |||||    
T  11412774 cgacacctatgatcacattgaattatgtcattttctcatattattatcggtgtc 11412827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 446
Target Start/End: Original strand, 40747768 - 40747833
Alignment:
Q  381 cgacaccgacacgacacctatgattatactaaattatatcattttctcatattattatctgtgtcg 446  Q
    ||||||| ||| ||||||||| |||| | | |||||| ||||||||||| ||||||||| ||||||    
T  40747768 cgacaccaacatgacacctataattacattgaattatgtcattttctcaaattattatccgtgtcg 40747833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 381 - 487
Target Start/End: Original strand, 225263 - 225369
Alignment:
Q  381 cgacaccgacacgacacctatgattatactaaattatatcattttctcatattattatctgtgtcgacgtgtcggtgtccgtatcttgtctggtatccgt 480  Q
    ||||||| ||||||||| ||| |||| | |  ||||| ||||||||||| |||||||||||||||| |||||| |||||||| || |||| ||| |||||    
T  225263 cgacaccaacacgacacttataattacattgtattatgtcattttctcaaattattatctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgt 225362  T
Q  481 gtatgtg 487  Q
    || ||||    
T  225363 gtctgtg 225369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 386 - 450
Target Start/End: Complemental strand, 2008 - 1944
Alignment:
Q  386 ccgacacgacacctatgattatactaaattatatcattttctcatattattatctgtgtcgacgt 450  Q
    ||||||||||||||||||||| |||||| ||| |||||||| || ||||||||| ||||||||||    
T  2008 ccgacacgacacctatgattacactaaaatatgtcattttcacaaattattatccgtgtcgacgt 1944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0722 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0722
Description:

Target: scaffold0722; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 403 - 464
Target Start/End: Original strand, 7049 - 7110
Alignment:
Q  403 attatactaaattatatcattttctcatattattatctgtgtcgacgtgtcggtgtccgtat 464  Q
    ||||||||||||||| | ||||| ||| ||||||| |||||||||||| || ||||||||||    
T  7049 attatactaaattatgtaattttttcaaattattagctgtgtcgacgtatcagtgtccgtat 7110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 437
Target Start/End: Original strand, 68249 - 68293
Alignment:
Q  393 gacacctatgattatactaaattatatcattttctcatattatta 437  Q
    ||||||||| ||||||||||||||||| ||||||||| |||||||    
T  68249 gacacctataattatactaaattatatgattttctcaaattatta 68293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 458
Target Start/End: Complemental strand, 56974 - 56909
Alignment:
Q  393 gacacctatgattatactaaattatatcattttctcatattattatctgtgtcgacgtgtcggtgt 458  Q
    ||||| |||||||| ||| |||||||||||||||||| ||||| |||| | || ||||||| ||||    
T  56974 gacacttatgattacactgaattatatcattttctcaaattataatctttatcaacgtgtcagtgt 56909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 403 - 495
Target Start/End: Complemental strand, 20214 - 20122
Alignment:
Q  403 attatactaaattatatcattttctcatattattatctgtgtcgacgtgtcggtgtccgtatcttgtctggtatccgtgtatgtgcttcatag 495  Q
    |||| ||| |||||| | ||||| ||| ||||||| |||||||| ||||||  ||||||| || |||| ||| ||||| | ||||||||||||    
T  20214 attacactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtatctgtgcttcatag 20122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 412 - 472
Target Start/End: Original strand, 192275 - 192335
Alignment:
Q  412 aattatatcattttctcatattattatctgtgtcgacgtgtcggtgtccgtatcttgtctg 472  Q
    |||||| | ||||||||| ||||||| | |||||| |||||| ||||||||||| ||||||    
T  192275 aattatgtaattttctcaaattattaacggtgtcggcgtgtcagtgtccgtatcgtgtctg 192335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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