View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5255_high_20 (Length: 354)
Name: NF5255_high_20
Description: NF5255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5255_high_20 |
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Alignment Details
Target: chr6 (Bit Score: 317; Significance: 1e-179; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 16 - 339
Target Start/End: Complemental strand, 2099683 - 2099359
Alignment:
| Q |
16 |
atgacagaaattttaagtccctaaactgctaatggtgggcatctacacattgggcatgttcaaatttacaatattacaaacaacatttgacctttgacat |
115 |
Q |
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| T |
2099683 |
atgacagaaattttaagtccctaaactgctaatggtgggcatctacacattgggcatgttcaaatttacaatattacaaacaacatttgacctttgacat |
2099584 |
T |
|
| Q |
116 |
gccagttcacatgtgaaaccaccaatttgctaaactgtagtacttactagttgctagacagaaatgtaacatagttgccaatagtttttgacagtggcat |
215 |
Q |
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| T |
2099583 |
gccagttcacatgtgaaaccaccaatttgctaaactgtagtacttactagttgctagacagaaatgtaacatagttgccaatagtttttgacagtggcat |
2099484 |
T |
|
| Q |
216 |
gctgtcagatgatcgttaattcatgcgatcttcttgaacttgaccatctacataaagtttaagatcaattaaatacaga-ttaagacaagttaatagatt |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2099483 |
gctgtcagatgatcgttaattcatgcgatcttcttgaacttgaccatctacataaagtttaagatcaattaaatacagatttaagacaagttaatagatt |
2099384 |
T |
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| Q |
315 |
gttcaaaatatttctcccaaaaaat |
339 |
Q |
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| T |
2099383 |
gttcaaaatatttctcccaaaaaat |
2099359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 26 - 322
Target Start/End: Complemental strand, 2107833 - 2107541
Alignment:
| Q |
26 |
ttttaagtccctaaactgctaatggtgggcatctacacattgggcatgttcaaatttacaatattacaaacaacatttgacctttgacatgccagttcac |
125 |
Q |
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| T |
2107833 |
ttttaagtccctaaactgctaatagtgggcatctacacattaggcatgttcaaatttacaatattacaaacaatatttgacctttgacatgccagttcac |
2107734 |
T |
|
| Q |
126 |
atgtgaaaccaccaatttgctaaactgtagtacttactagttgctagacagaaatgtaacatagttgccaatagtttttgacagtggcatgctgtcagat |
225 |
Q |
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| T |
2107733 |
atgtgaaaccaccaatttgctaaactgaagtac-------ttgctagacataaatgtaacatagttgccaatagtttttgacagtggcatgccgtcggat |
2107641 |
T |
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| Q |
226 |
gatcgttaattcatgcgatcttcttgaacttgaccatctacataaa--gtttaagatcaattaaatacagat-taagacaagttaatagattgttcaaaa |
322 |
Q |
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| T |
2107640 |
gatcgttaattcatgcaatcttcttgaacttgaccgtctacaaaaaagttttaagatcgattaaatacatatgtaagacaagttaatagattgttcaaaa |
2107541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 68 - 292
Target Start/End: Complemental strand, 2089337 - 2089122
Alignment:
| Q |
68 |
ggcatgttcaaatttacaatattacaaacaacatttgacctttgacatgccagttcacatgtgaaaccaccaatttgctaaactgtagtacttactagtt |
167 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||| | ||||||| ||| ||||||| ||| || || |
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| T |
2089337 |
ggcatgttcaaatttacaatattacaaacaatatttgacctttgacatgcatggtcacatataaaaccactaatgtgctaaattgt---------tactt |
2089247 |
T |
|
| Q |
168 |
gctagacagaaatgtaacatagttgccaatagtttttgacagtggcatgctgtcagatgatcgttaattcatgcgatcttcttgaacttgaccatctaca |
267 |
Q |
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| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||| |||||||||||||||| |
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| T |
2089246 |
gttagacagaaagataacatagttgccaatagtttttgacagtggcatgctgtcatatgaacattaattcatgcgatcttcttcaacttgaccatctaca |
2089147 |
T |
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| Q |
268 |
taaagtttaagatcaattaaataca |
292 |
Q |
| |
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||||||||||||| ||||| |||| |
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| T |
2089146 |
aaaagtttaagatccattaactaca |
2089122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 229
Target Start/End: Complemental strand, 2103426 - 2103373
Alignment:
| Q |
175 |
agaaatgtaacatagttgccaatagtttttgacagtggcatgctgtcagatgatc |
229 |
Q |
| |
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||||| |||||||||||||||||| |||| |||||||||||||||||| |||||| |
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| T |
2103426 |
agaaaagtaacatagttgccaataatttt-gacagtggcatgctgtcacatgatc |
2103373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 208
Target Start/End: Complemental strand, 2063423 - 2063389
Alignment:
| Q |
174 |
cagaaatgtaacatagttgccaatagtttttgaca |
208 |
Q |
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|||||||||||||||||||||| |||||||||||| |
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| T |
2063423 |
cagaaatgtaacatagttgccattagtttttgaca |
2063389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 116
Target Start/End: Complemental strand, 2059688 - 2059640
Alignment:
| Q |
68 |
ggcatgttcaaatttacaatattacaaacaacatttgacctttgacatg |
116 |
Q |
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||||| |||||||| |||||||| ||||||||||| |||||||||||| |
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| T |
2059688 |
ggcatattcaaattaacaatattgtaaacaacatttaacctttgacatg |
2059640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 116
Target Start/End: Complemental strand, 2103529 - 2103481
Alignment:
| Q |
68 |
ggcatgttcaaatttacaatattacaaacaacatttgacctttgacatg |
116 |
Q |
| |
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|||||||||||||| |||| ||| |||||||||| ||||||||||||| |
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| T |
2103529 |
ggcatgttcaaattgacaaaattgtaaacaacattcgacctttgacatg |
2103481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 39182168 - 39182217
Alignment:
| Q |
68 |
ggcatgttcaaatttacaatattacaaacaacatttgacctttgacatgc |
117 |
Q |
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|||||||||||||| |||| ||| |||||||||||||| |||||||||| |
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| T |
39182168 |
ggcatgttcaaattgacaaaattgtaaacaacatttgacttttgacatgc |
39182217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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