View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5255_high_22 (Length: 342)
Name: NF5255_high_22
Description: NF5255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5255_high_22 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 5669118 - 5669441
Alignment:
| Q |
1 |
tatcgattcagaccttgacagtcttttgttcttcaagttacggcgcttgttcaatttttgtctggactctggatgttcttgtccttataccagcagccta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5669118 |
tatcgattcagaccttgacagtcttttgttcttcaagttacggcgcttgttcaatttttgtctggactctggatgttcttgtccttataccagcagccta |
5669217 |
T |
|
| Q |
101 |
tcttatttgtttcttttgctgtatgttcaggcactatgttgccttgagattttggttcagtttaatttgtttgttcttttttctgcttagtgttactctg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5669218 |
tcttatttgtttcttttgctgtatgttcaggcactgtgttgccttgagattttggttcagtttaatttgtttgttcttttttctgcttagtgttactctg |
5669317 |
T |
|
| Q |
201 |
gatttattcaaacatgcgcgatcactacttctgtattcgattgcaccatgttacatcttgttctcggtgtaagtgattctaataaatttcagttgctccg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5669318 |
gatttattcaaacatgcgcgatcactacttctgtattcgattgcaccatgttacatcttgttctcggtgtaagtgattctaataaatttcagttgctccg |
5669417 |
T |
|
| Q |
301 |
aaagtgaaaatttacgctcatatt |
324 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
5669418 |
aaagtgaaaatttacgctcatatt |
5669441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 5689957 - 5690015
Alignment:
| Q |
170 |
tttgttcttttttctgcttagtgttactctggatttattcaaacatgcgcgatcactac |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| | |||||| | ||||||||| |
|
|
| T |
5689957 |
tttgttcttttttctgcttagtgttactctggttttatccgaacatgtgtgatcactac |
5690015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 295
Target Start/End: Original strand, 5690013 - 5690057
Alignment:
| Q |
252 |
tacatcttgttctcggtgtaagtgattctaat-aaatttcagttg |
295 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||| |||||||||||| |
|
|
| T |
5690013 |
tacatcttgttctcggtgcaagtggttctaataaaatttcagttg |
5690057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University