View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5255_high_24 (Length: 316)
Name: NF5255_high_24
Description: NF5255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5255_high_24 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 16 - 300
Target Start/End: Original strand, 5809352 - 5809637
Alignment:
| Q |
16 |
caaaataaagaaaatacatagacatgtcatgaaaagaaggagagaggaaaaataccaaggccaatgtttttgt--aggcgagaattattttatccaaact |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5809352 |
caaaataaagaaaatacatagacatgtcatgaaaagaaggagagaggaaaaataccaaggccaatgtttttgtcgaggcgagaattattttatccaaact |
5809451 |
T |
|
| Q |
114 |
accaaatttcccaaaaatctttgcaagttcattttcggtggcaccataaggcaagttcttcgctaaaattacatggttacttcttttcaagccatcaact |
213 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5809452 |
accaaatttccccaaaatctttgcaagttcattttcggtggcaccataaggcaagttctacgctaaaattacatggttacttcttttcaagccatcaact |
5809551 |
T |
|
| Q |
214 |
ttacccttcgcaagctcctccaaagcttccacattcactccagcttttttaaatgcgttctttgtttctgaaatcacttgtgtttct |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5809552 |
ttacccttcgcaagctcctccaaagcttccacattcactccagcttttttaaatgcgtt-tttgtttctgaaatcacttgtgtttct |
5809637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 145; Significance: 3e-76; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 26 - 298
Target Start/End: Original strand, 37754793 - 37755067
Alignment:
| Q |
26 |
aaaatacata-gacatgtcatgaaaagaaggagagaggaaaaataccaaggccaatgtttttgt--aggcgagaattattttatccaaactaccaaattt |
122 |
Q |
| |
|
|||||||||| |||| ||||||| | |||||||| |||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
37754793 |
aaaatacataagacacatcatgaacataaggagag-ggaaaaataccagggccaatgtttttgtcgaggggagaattattttatccaaactaccaaattt |
37754891 |
T |
|
| Q |
123 |
cccaaaaatctttgcaagttcattttcggtggcaccataaggcaagttcttcgctaaaattacatggttacttcttttcaagccatcaactttacccttc |
222 |
Q |
| |
|
|||||| |||||||||||||||||||| || |||||||| ||||| || || ||||||| |||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
37754892 |
cccaaacatctttgcaagttcattttccgtagcaccatatggcaaattttttgctaaaagtacatggttacttcttttcacgccatcaactttacaattc |
37754991 |
T |
|
| Q |
223 |
gcaagctcctccaaagcttccacattcactccagcttttttaaatgcgttctttgtttctgaaatcacttgtgttt |
298 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||||||| || |||||||| |||||||||| |||| |
|
|
| T |
37754992 |
acaagctcctccagagactccacattcactccagcttttttaaatgcattttttgtttcaaaaatcacttgagttt |
37755067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 26 - 298
Target Start/End: Original strand, 37760767 - 37761041
Alignment:
| Q |
26 |
aaaatacata-gacatgtcatgaaaagaaggagagaggaaaaataccaaggccaatgtttttgt--aggcgagaattattttatccaaactaccaaattt |
122 |
Q |
| |
|
|||||||||| |||| ||||||| | |||||||| |||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
37760767 |
aaaatacataagacacatcatgaacataaggagag-ggaaaaataccagggccaatgtttttgtcgaggggagaattattttatccaaactaccaaattt |
37760865 |
T |
|
| Q |
123 |
cccaaaaatctttgcaagttcattttcggtggcaccataaggcaagttcttcgctaaaattacatggttacttcttttcaagccatcaactttacccttc |
222 |
Q |
| |
|
|||||| |||||||||||||||||||| || |||||||| ||||| || || ||||||| |||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
37760866 |
cccaaacatctttgcaagttcattttccgtagcaccatatggcaaattttttgctaaaagtacatggttacttcttttcacgccatcaactttacaattc |
37760965 |
T |
|
| Q |
223 |
gcaagctcctccaaagcttccacattcactccagcttttttaaatgcgttctttgtttctgaaatcacttgtgttt |
298 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||||||| || |||||||| |||||||||| |||| |
|
|
| T |
37760966 |
acaagctcctccagagactccacattcactccagcttttttaaatgcattttttgtttcaaaaatcacttgagttt |
37761041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 61 - 290
Target Start/End: Complemental strand, 38605875 - 38605644
Alignment:
| Q |
61 |
ggaaaaataccaaggccaatgtttttgt--aggcgagaattattttatccaaactaccaaatttcccaaaaatctttgcaagttcattttcggtggcacc |
158 |
Q |
| |
|
|||||||||||| |||||||||| |||| ||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| || ||||| |
|
|
| T |
38605875 |
ggaaaaataccagggccaatgttcttgtcgaggggagaattattttatccaaactaccaaatttcccaaacatctctgcaagttcattttccgtagcacc |
38605776 |
T |
|
| Q |
159 |
ataaggcaagttcttcgctaaaattacatggttacttcttttcaagccatcaactttacccttcgcaagctcctccaaagcttccacattcactccagct |
258 |
Q |
| |
|
||| ||||| || || ||||||| |||||||||||||||||| | ||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
38605775 |
atatggcaaattttttgctaaaagtacatggttacttcttttaacgccataaactttaccctccgcaagctcctccaaagactccacattcactccagcc |
38605676 |
T |
|
| Q |
259 |
tttttaaatgcgttctttgtttctgaaatcac |
290 |
Q |
| |
|
||||||||||| || ||||||||| ||||||| |
|
|
| T |
38605675 |
tttttaaatgcattttttgtttctaaaatcac |
38605644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 65 - 282
Target Start/End: Original strand, 37738980 - 37739199
Alignment:
| Q |
65 |
aaataccaaggccaatgtttttgt--aggcgagaattattttatccaaactaccaaatttcccaaaaatctttgcaagttcattttcggtggcaccataa |
162 |
Q |
| |
|
|||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || |||||||| |
|
|
| T |
37738980 |
aaataccagggccaatgtttttgtcgagggcagaattattttatccaaactaccaaatttcccaaacatctttgcaagatcattttccgtagcaccatat |
37739079 |
T |
|
| Q |
163 |
ggcaagttcttcgctaaaattacatggttacttcttttcaagccatcaactttacccttcgcaagctcctccaaagcttccacattcactccagcttttt |
262 |
Q |
| |
|
||||| || |||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||| || ||||| ||||||||||||||| |
|
|
| T |
37739080 |
ggcaaatttttcgctaaaagtacatggttacttcttttcctgccatcaactttacccttcgcatgctcctccagagactccacgttcactccagcttttc |
37739179 |
T |
|
| Q |
263 |
taaatgcgttctttgtttct |
282 |
Q |
| |
|
||||||| || ||||||||| |
|
|
| T |
37739180 |
taaatgcattttttgtttct |
37739199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University