View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5255_high_26 (Length: 314)

Name: NF5255_high_26
Description: NF5255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5255_high_26
NF5255_high_26
[»] chr3 (11 HSPs)
chr3 (19-303)||(55146674-55146958)
chr3 (30-305)||(30715997-30716272)
chr3 (27-291)||(48161594-48161872)
chr3 (144-291)||(45031707-45031854)
chr3 (144-294)||(18946211-18946371)
chr3 (143-232)||(37222546-37222635)
chr3 (143-228)||(47867779-47867864)
chr3 (153-260)||(4950620-4950726)
chr3 (244-303)||(183488-183547)
chr3 (164-260)||(53562220-53562315)
chr3 (180-213)||(18894101-18894134)
[»] chr4 (6 HSPs)
chr4 (27-303)||(39390572-39390860)
chr4 (108-291)||(55741138-55741321)
chr4 (143-260)||(12028067-12028184)
chr4 (131-260)||(31302486-31302614)
chr4 (153-232)||(54603945-54604023)
chr4 (49-93)||(55741359-55741403)
[»] chr5 (9 HSPs)
chr5 (102-303)||(19870662-19870863)
chr5 (101-182)||(9042232-9042313)
chr5 (173-291)||(9042085-9042213)
chr5 (136-260)||(10826779-10826903)
chr5 (143-260)||(7250281-7250398)
chr5 (131-276)||(42449715-42449860)
chr5 (131-260)||(23062418-23062546)
chr5 (48-95)||(19870593-19870640)
chr5 (33-95)||(9042333-9042394)
[»] chr2 (8 HSPs)
chr2 (101-303)||(40614412-40614614)
chr2 (143-291)||(19508050-19508198)
chr2 (143-232)||(26170638-26170727)
chr2 (136-232)||(29899370-29899466)
chr2 (153-256)||(34457196-34457297)
chr2 (162-257)||(2121007-2121101)
chr2 (181-276)||(21831310-21831404)
chr2 (48-95)||(15738597-15738644)
[»] chr6 (4 HSPs)
chr6 (27-295)||(5613915-5614207)
chr6 (60-252)||(1259800-1259991)
chr6 (135-303)||(19273382-19273552)
chr6 (48-95)||(2435144-2435191)
[»] chr7 (12 HSPs)
chr7 (27-291)||(46529175-46529463)
chr7 (108-303)||(3938658-3938853)
chr7 (144-303)||(13953141-13953300)
chr7 (165-303)||(28510445-28510583)
chr7 (153-278)||(11409389-11409514)
chr7 (182-303)||(41957980-41958112)
chr7 (182-302)||(1804733-1804864)
chr7 (153-232)||(31592594-31592672)
chr7 (153-232)||(17733817-17733895)
chr7 (185-260)||(45414538-45414612)
chr7 (153-211)||(2393261-2393319)
chr7 (33-91)||(3938569-3938627)
[»] chr1 (8 HSPs)
chr1 (131-260)||(31385547-31385676)
chr1 (136-260)||(42465057-42465181)
chr1 (136-260)||(15292509-15292632)
chr1 (153-260)||(13706347-13706453)
chr1 (153-232)||(46200924-46201002)
chr1 (131-260)||(42058355-42058483)
chr1 (136-197)||(27108852-27108913)
chr1 (153-214)||(18239704-18239765)
[»] scaffold0013 (1 HSPs)
scaffold0013 (104-232)||(86660-86793)
[»] chr8 (9 HSPs)
chr8 (143-232)||(1550818-1550906)
chr8 (104-260)||(23877890-23878042)
chr8 (131-276)||(44119108-44119254)
chr8 (146-302)||(21551423-21551578)
chr8 (146-302)||(21552469-21552624)
chr8 (153-260)||(23718425-23718531)
chr8 (153-232)||(20495281-20495359)
chr8 (180-232)||(42100498-42100549)
chr8 (48-95)||(18701552-18701599)
[»] scaffold1813 (1 HSPs)
scaffold1813 (153-260)||(577-683)
[»] scaffold0251 (1 HSPs)
scaffold0251 (153-232)||(1803-1881)
[»] scaffold0184 (1 HSPs)
scaffold0184 (153-232)||(28395-28473)
[»] scaffold0078 (1 HSPs)
scaffold0078 (153-232)||(44371-44449)
[»] scaffold0916 (1 HSPs)
scaffold0916 (182-276)||(503-598)


Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 19 - 303
Target Start/End: Original strand, 55146674 - 55146958
Alignment:
Q  19 ggaagcccgcggttgttaacaaccactatgttctgcgaataaacaagaacagaaccctcatttttccattttccagatttctcaacttccaaatttctcc 118  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55146674 ggaagcccacggttgttaacaaccactacgttctgcgaataaacaagaacagaaccctcatttttccattttccagatttctcaacttccaaatttctcc 55146773  T
Q  119 aaacttgtacttcacgaatttgcgccaaatttcatcaattaattcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgtta 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  55146774 aaacttgtacttcacgaatttgcgccaaatttcatcaattaattcacaagtaagttctttccttcctatttacatgcaatgtagtttctttagggtgtta 55146873  T
Q  219 gttttcataattttgagccaaatgttagttttaggttaggttaggaaattgaaaattaagcttgatttagatgttttaaagtatt 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  55146874 gttttcataattttgagccaaatgttagttttaggttaggttaggaaattgaaaattaaacttgatttagatgttttaaagtatt 55146958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 30 - 305
Target Start/End: Original strand, 30715997 - 30716272
Alignment:
Q  30 gttgttaacaaccactatgttctgcgaataaacaagaacagaaccctcatttttccattttccagatttctcaacttccaaatttctccaaacttgtact 129  Q
    ||||||||||| | ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30715997 gttgttaacaaacgctacgttctgcgaataaacaagaacataaccctcatttttccattttccagatttctcaacttccaaatttctccaaacttgtact 30716096  T
Q  130 tcacgaatttgcgccaaatttcatcaattaattcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataat 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  30716097 tcacgaatttgcgccaaatttcatcaattaattcacaagtaagttctttccttcctatttacatgcagtgtagtttgtttagggtgttagttttcataat 30716196  T
Q  230 tttgagccaaatgttagttttaggttaggttaggaaattgaaaattaagcttgatttagatgttttaaagtattat 305  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  30716197 tttgagtcaaatgttagttttaggttaggttagaaaattgaaaattaagcttgatttagatgttttaaagtattat 30716272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 27 - 291
Target Start/End: Original strand, 48161594 - 48161872
Alignment:
Q  27 gcggttgttaacaaccactatgttctgcgaataaacaagaacagaaccctcatttttccattttccagatt--------------tctcaacttccaaat 112  Q
    ||||| |||||||||| ||  ||||||||||||||||||||| ||||||||||||||||||||||||||                || ||||||||||||    
T  48161594 gcggtagttaacaaccgctgagttctgcgaataaacaagaacggaaccctcatttttccattttccagaaacacaaacactaaaatcacaacttccaaat 48161693  T
Q  113 ttctccaaacttgtacttcacgaatttgcgccaaatttcatcaattaattcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagg 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  48161694 ttctccaaacttgtacttcacgaatttgcgccaaatttcatcaattaattcataagtaagttcttttcttcctatttacatgcaatgtagtttgtttagg 48161793  T
Q  213 gtgttagttttcataattttgagccaaatgttagttttaggttaggttaggaaattgaaaattaagcttgatttagatg 291  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  48161794 gtgttagttttcataaatttgagcaaaatgttagttttaggttaggttagaaaattgaaaattaagcatgatttagatg 48161872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 144 - 291
Target Start/End: Original strand, 45031707 - 45031854
Alignment:
Q  144 caaatttcatcaattaattcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataattttgagccaaatgt 243  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||    
T  45031707 caaatttcatcaattaattcacaagtaagttatttccttcctgtttacatgcaatgtagtttgtttaggatgttagttttcataaatttgagcaaaatgt 45031806  T
Q  244 tagttttaggttaggttaggaaattgaaaattaagcttgatttagatg 291  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||    
T  45031807 tagttttaggttaggttagaaaattgaaaattaagcatgatttagatg 45031854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 144 - 294
Target Start/End: Complemental strand, 18946371 - 18946211
Alignment:
Q  144 caaatttcatcaattaattcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataattttgagccaaatgt 243  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  18946371 caaatttcatcaattaattcacaagtaagttatttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataaatttgagcaaaatgt 18946272  T
Q  244 tagtt----------ttaggttaggttaggaaattgaaaattaagcttgatttagatgttt 294  Q
    |||||          |||||||| ||||| |||||||||||||||| ||||||||||||||    
T  18946271 tagttttagatagttttaggttatgttagaaaattgaaaattaagcatgatttagatgttt 18946211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 143 - 232
Target Start/End: Complemental strand, 37222635 - 37222546
Alignment:
Q  143 ccaaatttcatcaattaattcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataatttt 232  Q
    |||||||||||||||||||| ||||| |||| | || |||| |||||||||||||||||| ||  |||||||||||||||||||||||||    
T  37222635 ccaaatttcatcaattaatttacaagaaagtacctttcttcttatttacatgcaatgtaggtttcttagggtgttagttttcataatttt 37222546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 143 - 228
Target Start/End: Original strand, 47867779 - 47867864
Alignment:
Q  143 ccaaatttcatcaattaattcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataa 228  Q
    |||||||||||||||||||||||  |||||| | || |||| |||||||||||||||||| ||| |||||||||||||||||||||    
T  47867779 ccaaatttcatcaattaattcactggtaagtacctttcttcttatttacatgcaatgtaggttgcttagggtgttagttttcataa 47867864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 153 - 260
Target Start/End: Complemental strand, 4950726 - 4950620
Alignment:
Q  153 tcaattaattcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataattttgagccaaatgttagt-ttta 251  Q
    |||| ||| ||||||||||||| ||| ||| |||||||||||||| |||||||||||||||||||| ||||||||||||| ||| ||| |||||| ||||    
T  4950726 tcaagtaaatcacaagtaagttattttctttctatttacatgcaaggtagtttgtttagggtgtta-ttttcataatttt-agcaaaacgttagtgttta 4950629  T
Q  252 ggttaggtt 260  Q
    |||||||||    
T  4950628 ggttaggtt 4950620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 244 - 303
Target Start/End: Complemental strand, 183547 - 183488
Alignment:
Q  244 tagttttaggttaggttaggaaattgaaaattaagcttgatttagatgttttaaagtatt 303  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  183547 tagttttaggttaggttagaaaattgaaaattaagcatgatttagatgttttaaagtatt 183488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 164 - 260
Target Start/End: Complemental strand, 53562315 - 53562220
Alignment:
Q  164 acaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataattttgagccaaatgttagt-tttaggttaggtt 260  Q
    |||||||||| | || ||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||| |||||||| | |||||||||||||    
T  53562315 acaagtaagtacctttcttcctatttacatgcaatgtaggttgtttagggtgtt-gttttcataatttt-agcaaaatgttaatgtttaggttaggtt 53562220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 213
Target Start/End: Original strand, 18894101 - 18894134
Alignment:
Q  180 cttcctatttacatgcaatgtagtttgtttaggg 213  Q
    ||||||||||||||||||||||| ||||||||||    
T  18894101 cttcctatttacatgcaatgtaggttgtttaggg 18894134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 27 - 303
Target Start/End: Complemental strand, 39390860 - 39390572
Alignment:
Q  27 gcggttgttaacaaccactatgttctgcgaataaacaagaacagaaccctcatttttccattttccagatt--------------tctcaacttccaaat 112  Q
    ||||||||||||||||  |  ||||||||||||||||||||||||||||||||||||||||||||||||                || ||||||||||||    
T  39390860 gcggttgttaacaaccgttgcgttctgcgaataaacaagaacagaaccctcatttttccattttccagaaacacaaacactaaaatcacaacttccaaat 39390761  T
Q  113 ttctccaaacttgtacttcacgaatttgcgccaaatttcatcaattaattcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  39390760 ttctccaaacttgtacttcacgaatttgcgccaaatttcatcaattaattcacaagtaagttccttccttcctatttacatgcaatgtagtttgtttagg 39390661  T
Q  213 gtgttagttttcataattttgagccaaatgttagttttaggttaggttaggaaattgaaaattaagcttgatttagatgttttaaagtatt 303  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||  ||||| |||||||||||||||||||  |||||||||||||    
T  39390660 gtgttagttttcataattttgagcaaaatgttagttttaggttaggttaaaaaattaaaaattaagcttgatttag--gttttaaagtatt 39390572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 108 - 291
Target Start/End: Complemental strand, 55741321 - 55741138
Alignment:
Q  108 caaatttctccaaacttgtacttcacgaatttgcgccaaatttcatcaattaattcacaagtaagttctttccttcctatttacatgcaatgtagtttgt 207  Q
    |||||||||||||||||  | | |||||| ||| ||| |||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  55741321 caaatttctccaaacttcaattgcacgaagttgagcccaatttcttcaattaattcacaagaaagttcttttcttcctatttacatgcaatgtagtttgt 55741222  T
Q  208 ttagggtgttagttttcataattttgagccaaatgttagttttaggttaggttaggaaattgaaaattaagcttgatttagatg 291  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||| || |||||||||||    
T  55741221 ttagggtgttagttttcataattttgagcaaaatgttagttttaggttaggttagaaaattgcaaattatgcatgatttagatg 55741138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 143 - 260
Target Start/End: Complemental strand, 12028184 - 12028067
Alignment:
Q  143 ccaaatttcatcaattaattcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataattttgagccaaatg 242  Q
    ||||||||||||||||||||||||||||||| | || |||| |||||||||||||||||| ||| ||||||||||||||||||||||||| ||| |||      
T  12028184 ccaaatttcatcaattaattcacaagtaagtacctttcttcttatttacatgcaatgtaggttgcttagggtgttagttttcataatttt-agcaaaact 12028086  T
Q  243 ttagt-tttaggttaggtt 260  Q
    ||||| |||||||||||||    
T  12028085 ttagtgtttaggttaggtt 12028067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 131 - 260
Target Start/End: Original strand, 31302486 - 31302614
Alignment:
Q  131 cacgaatttgcgccaaatttcatcaattaattcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataatt 230  Q
    |||| ||||| |||||||||| |||| ||||| ||||||||||| |||  || ||||||||||||||||||||||||||||||||||| |||||||||||    
T  31302486 cacggatttgagccaaatttcttcaagtaattaacaagtaagttattttatttctatttacatgcaatgtagtttgtttagggtgtta-ttttcataatt 31302584  T
Q  231 ttgagccaaatgttagt-tttaggttaggtt 260  Q
    || ||| |||||||||| |||||||||||||    
T  31302585 tt-agcaaaatgttagtgtttaggttaggtt 31302614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 153 - 232
Target Start/End: Complemental strand, 54604023 - 54603945
Alignment:
Q  153 tcaattaattcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataatttt 232  Q
    |||| ||| |||||||||||| | || ||||||||||||| ||||||||| ||||||||||||||| |||||||||||||    
T  54604023 tcaagtaaatcacaagtaagtacctttcttcctatttacaagcaatgtaggttgtttagggtgtta-ttttcataatttt 54603945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 55741403 - 55741359
Alignment:
Q  49 ttctgcgaataaacaagaacagaaccctcatttttccattttcca 93  Q
    |||||||||| || |||||||||||| ||| ||||||||||||||    
T  55741403 ttctgcgaattaagaagaacagaaccatcacttttccattttcca 55741359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 178; Significance: 5e-96; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 102 - 303
Target Start/End: Original strand, 19870662 - 19870863
Alignment:
Q  102 aacttccaaatttctccaaacttgtacttcacgaatttgcgccaaatttcatcaattaattcacaagtaagttctttccttcctatttacatgcaatgta 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  19870662 aacttccaaatttctccaaacttgtacttcacgaatttgcgccaaatttcatcaattaattcacaagtaagttatttccttcctatttacatgcaatgta 19870761  T
Q  202 gtttgtttagggtgttagttttcataattttgagccaaatgttagttttaggttaggttaggaaattgaaaattaagcttgatttagatgttttaaagta 301  Q
    |||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  19870762 gtttgtttagagtgttagttttcataattttgagtaaaatgttagttttaggttaggttagaaaattgaaaattaagtttgatttagatgttttaaagta 19870861  T
Q  302 tt 303  Q
    ||    
T  19870862 tt 19870863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 101 - 182
Target Start/End: Complemental strand, 9042313 - 9042232
Alignment:
Q  101 caacttccaaatttctccaaacttgtacttcacgaatttgcgccaaatttcatcaattaattcacaagtaagttctttcctt 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9042313 caacttccaaatttctccaaacttgtacttcacgaatttgcgccaaatttcatcaattaattcacaagtaagttctttcctt 9042232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 173 - 291
Target Start/End: Complemental strand, 9042213 - 9042085
Alignment:
Q  173 ttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataattttgagccaaatgttagttttag----------gttaggttag 262  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||          ||||||||||    
T  9042213 ttctttcctttctatttacatgtaatgtagtttgtttagggtgttagttttcataaatttgagcaaaatgttagttttaggtagttttatgttaggttag 9042114  T
Q  263 gaaattgaaaattaagcttgatttagatg 291  Q
     |||||||||||||||| |||||||||||    
T  9042113 aaaattgaaaattaagcatgatttagatg 9042085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 136 - 260
Target Start/End: Complemental strand, 10826903 - 10826779
Alignment:
Q  136 atttgcgccaaatttcatcaattaattcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataattttgag 235  Q
    ||||| |||||||||| |||| ||||| ||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||    
T  10826903 atttgagccaaatttcttcaagtaattaacaagtaagttattttcttcctatttacatgcaatgtaggttgtttagggtgttagttttcataatttt-ag 10826805  T
Q  236 ccaaatgttagt-tttaggttaggtt 260  Q
    | |||  ||||| |||||||||||||    
T  10826804 caaaactttagtgtttaggttaggtt 10826779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 143 - 260
Target Start/End: Original strand, 7250281 - 7250398
Alignment:
Q  143 ccaaatttcatcaattaattcacaagtaagt-tctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataattttgagccaaat 241  Q
    ||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||| ||| ||||||||||||||||||||||||| ||| |||     
T  7250281 ccaaatttcatcaattaattcacaagtaagtatcttt-cttcttatttacatgcaatgtaggttgcttagggtgttagttttcataatttt-agcaaaac 7250378  T
Q  242 gttagt-tttaggttaggtt 260  Q
     ||||| |||||||||||||    
T  7250379 tttagtgtttaggttaggtt 7250398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 131 - 276
Target Start/End: Complemental strand, 42449860 - 42449715
Alignment:
Q  131 cacgaatttgcgccaaatttcatcaattaattcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataatt 230  Q
    |||| ||||| | |||||||| |||| ||||| ||||||||||| ||| ||| |||||| |||||||||||| |||||||||||||||||||||||||||    
T  42449860 cacggatttgagtcaaatttcttcaagtaattaacaagtaagttattttctttctatttgcatgcaatgtaggttgtttagggtgttagttttcataatt 42449761  T
Q  231 ttgagccaaatgttagt-tttaggttaggttaggaaattgaaaatta 276  Q
    || ||| |||  ||||| |||||||||||||  ||||||| ||||||    
T  42449760 tt-agcaaaactttagtgtttaggttaggttttgaaattgcaaatta 42449715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 131 - 260
Target Start/End: Original strand, 23062418 - 23062546
Alignment:
Q  131 cacgaatttgcgccaaatttcatcaattaattcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataatt 230  Q
    |||| ||||| || ||||||  |||| ||||| ||||||||||| |||  || ||||||||||||||||||||||||||||||||||| |||||||||||    
T  23062418 cacggatttgagctaaatttgttcaagtaattaacaagtaagttattttatttctatttacatgcaatgtagtttgtttagggtgtta-ttttcataatt 23062516  T
Q  231 ttgagccaaatgttagt-tttaggttaggtt 260  Q
    || ||| |||||||| | |||||||||||||    
T  23062517 tt-agcaaaatgttattgtttaggttaggtt 23062546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 95
Target Start/End: Original strand, 19870593 - 19870640
Alignment:
Q  48 gttctgcgaataaacaagaacagaaccctcatttttccattttccaga 95  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||||    
T  19870593 gttctgctaataaacaagaacagaaccctcattttttcattttccaga 19870640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 95
Target Start/End: Complemental strand, 9042394 - 9042333
Alignment:
Q  33 gttaacaaccactatgttctgcgaataaacaagaacagaaccctcatttttccattttccaga 95  Q
    |||||||||| ||  ||| || ||||||||||||||||| |||||||||||||||||||||||    
T  9042394 gttaacaaccgctgagttatgtgaataaacaagaacaga-ccctcatttttccattttccaga 9042333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 159; Significance: 1e-84; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 101 - 303
Target Start/End: Complemental strand, 40614614 - 40614412
Alignment:
Q  101 caacttccaaatttctccaaacttgtacttcacgaatttgcgccaaatttcatcaattaattcacaagtaagttctttccttcctatttacatgcaatgt 200  Q
    |||||| ||||||||||||||||| ||||||||||||||||||| ||| || || |||||||||||||||||||||||||||||||| ||||||||||||    
T  40614614 caactttcaaatttctccaaacttttacttcacgaatttgcgcccaatgtcttcgattaattcacaagtaagttctttccttcctatatacatgcaatgt 40614515  T
Q  201 agtttgtttagggtgttagttttcataattttgagccaaatgttagttttaggttaggttaggaaattgaaaattaagcttgatttagatgttttaaagt 300  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  40614514 agtttgtttagggtgttagttttcataattttgagcaaaatattagttttaggttaggttagaaaattgaaaattaagcatgatttagatgttttaaagt 40614415  T
Q  301 att 303  Q
    |||    
T  40614414 att 40614412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 143 - 291
Target Start/End: Original strand, 19508050 - 19508198
Alignment:
Q  143 ccaaatttcatcaattaattcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataattttgagccaaatg 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||    
T  19508050 ccaaatttcatcaattaattcacaagtaagttctttccttcctatttacatgcaatgtactttgtttagggtgttagtttttataattttgagcaaaatg 19508149  T
Q  243 ttagttttaggttaggttaggaaattgaaaattaagcttgatttagatg 291  Q
    |||||||||||||||||||| |||||| |||||| || |||||||||||    
T  19508150 ttagttttaggttaggttagaaaattgcaaattatgcatgatttagatg 19508198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 143 - 232
Target Start/End: Original strand, 26170638 - 26170727
Alignment:
Q  143 ccaaatttcatcaattaattcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataatttt 232  Q
    |||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||| ||||||||||    
T  26170638 ccaaatttcatcaattaactcacaagtaagttcttttcttcttatttacatgcaatgtaggttgtttagggtgttagttctcataatttt 26170727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 136 - 232
Target Start/End: Original strand, 29899370 - 29899466
Alignment:
Q  136 atttgcgccaaatttcatcaattaattcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataatttt 232  Q
    ||||| |||||||||| |||| ||||| ||||||| ||| ||| ||||||||||  ||||||||||| |||||||||||||||||||||||||||||    
T  29899370 atttgagccaaatttcttcaagtaattaacaagtatgttattttcttcctatttcaatgcaatgtaggttgtttagggtgttagttttcataatttt 29899466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 153 - 256
Target Start/End: Original strand, 34457196 - 34457297
Alignment:
Q  153 tcaattaattcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataattttgagccaaatgttagt-ttta 251  Q
    |||| ||| ||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||| |||||||||| |  ||| |||||||||| ||||    
T  34457196 tcaagtaaatcacaagtaagttattttctttctatttacatgcaatgtagtttgtttagggtgtta-ttttcataatat--agcaaaatgttagtattta 34457292  T
Q  252 ggtta 256  Q
    |||||    
T  34457293 ggtta 34457297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 162 - 257
Target Start/End: Complemental strand, 2121101 - 2121007
Alignment:
Q  162 tcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataattttgagccaaatgttagt-tttaggttag 257  Q
    ||||||||||||   || ||||||||||||||||||||||| ||||| ||||||||| ||||||||||||| ||| |||||||||| ||||||||||    
T  2121101 tcacaagtaagtatatttcttcctatttacatgcaatgtaggttgttcagggtgtta-ttttcataatttt-agcaaaatgttagtgtttaggttag 2121007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 276
Target Start/End: Original strand, 21831310 - 21831404
Alignment:
Q  181 ttcctatttacatgcaatgtagtttgtttagggtgttagttttcataattttgagccaaatgttagt-tttaggttaggttaggaaattgaaaatta 276  Q
    ||||||||||||||||||| || ||||||||||||||| | ||||||||||| ||| ||||||||||  ||||||||||||  ||||||| ||||||    
T  21831310 ttcctatttacatgcaatgaaggttgtttagggtgtta-tattcataatttt-agcaaaatgttagtggttaggttaggtttagaaattgcaaatta 21831404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 95
Target Start/End: Complemental strand, 15738644 - 15738597
Alignment:
Q  48 gttctgcgaataaacaagaacagaaccctcatttttccattttccaga 95  Q
    |||||||||||||||||||||| |||| ||| |||||| |||||||||    
T  15738644 gttctgcgaataaacaagaacaaaaccatcacttttcctttttccaga 15738597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 155; Significance: 3e-82; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 27 - 295
Target Start/End: Original strand, 5613915 - 5614207
Alignment:
Q  27 gcggttgttaacaaccactatgttctgcgaataaacaagaacagaaccctcatttttccattttccagatt--------------tctcaacttccaaat 112  Q
    |||||||||||||||| ||  |||||||||||||||||||||| || ||||||||||||||||||||||                || ||||||||||||    
T  5613915 gcggttgttaacaaccgctgcgttctgcgaataaacaagaacataatcctcatttttccattttccagaaacacaaacactaaaatcacaacttccaaat 5614014  T
Q  113 ttctccaaacttgtacttcacgaatttgcgccaaatttcatcaattaattcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagg 212  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  5614015 ttctccaaacttgtacttcacgaatttgcaccaaatttcatcaattaattcacaagtaagttctttccttcctatttacatgcaatgtagtctgtttagg 5614114  T
Q  213 gtgttagttttcataattttgagccaaatgt----------tagttttaggttaggttaggaaattgaaaattaagcttgatttagatgtttt 295  Q
    |||||||||||||||| ||||||| ||||||          ||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  5614115 gtgttagttttcataagtttgagcaaaatgttagttttaggtagttttaggttaggttagaaaattgaaaattaagcttgatttagatttttt 5614207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 60 - 252
Target Start/End: Complemental strand, 1259991 - 1259800
Alignment:
Q  60 aacaagaacagaaccctcatttttccattttccagatttctcaacttccaaatttctccaaacttgtacttcacgaatttgcgccaaatttcatcaatta 159  Q
    |||||||| |||||||||| |||| |||||||||||   | |||||||||||||||||||||||| |||| |||||||||||||| |||||| |||||||    
T  1259991 aacaagaatagaaccctcacttttacattttccagaaa-cacaacttccaaatttctccaaacttctactccacgaatttgcgcccaatttcttcaatta 1259893  T
Q  160 attcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataattttgagccaaatgttagttttag 252  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  1259892 attcacaagtaagttctttccttcctatttatatgcaatgtagtttgtttagggtgttagtttttataattttgagcaaaatgttagttttag 1259800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 135 - 303
Target Start/End: Complemental strand, 19273552 - 19273382
Alignment:
Q  135 aatttgcgccaaatttcatcaattaattcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataattttga 234  Q
    |||||| ||| |||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||        || ||||||||||    
T  19273552 aatttgagcccaatttcttcaattaattcacaagtaagttttttccttcatatttacatgcaatgtagtttgtttaggg--------tttataattttga 19273461  T
Q  235 gccaaatgttagtttt----------aggttaggttaggaaattgaaaattaagcttgatttagatgttttaaagtatt 303  Q
    || |||||||||||||          |||||||||||| |||||||||||||||| | ||||||||||||||| |||||    
T  19273460 gcaaaatgttagttttaggtagtttcaggttaggttagaaaattgaaaattaagcataatttagatgttttaatgtatt 19273382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 95
Target Start/End: Complemental strand, 2435191 - 2435144
Alignment:
Q  48 gttctgcgaataaacaagaacagaaccctcatttttccattttccaga 95  Q
    ||||| |||||||||||||||||||||| || ||||||||||||||||    
T  2435191 gttctacgaataaacaagaacagaacccccacttttccattttccaga 2435144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 139; Significance: 1e-72; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 27 - 291
Target Start/End: Complemental strand, 46529463 - 46529175
Alignment:
Q  27 gcggttgttaacaaccactatgttctgcgaataaacaagaacagaaccctcatttttccattttccagatt--------------tctcaacttccaaat 112  Q
    ||||||||||||||||  || |||||| |||||||| ||||||||||||||||||||||||||| ||||                | |||||||||||||    
T  46529463 gcggttgttaacaaccgttacgttctgtgaataaacgagaacagaaccctcatttttccattttgcagaaacacaaacactaaaatttcaacttccaaat 46529364  T
Q  113 ttctccaaacttgtacttcacgaatttgcgccaaatttcatcaattaattcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagg 212  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  46529363 ttctccaaacttgtatttcacgaatttgcgctaaatttcatcaattaattcacaagtaagttatttccttcctatttaaatgcaatgtagtttgtttagg 46529264  T
Q  213 gtgttagttttcataattttgagccaaatgttagttttag----------gttaggttaggaaattgaaaattaagcttgatttagatg 291  Q
    |||||||||||||||| ||||||| |||||||||||||||          |||||||||| |||||||||||||||| |||||||||||    
T  46529263 gtgttagttttcataaatttgagcaaaatgttagttttagatagttttaagttaggttagaaaattgaaaattaagcatgatttagatg 46529175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 108 - 303
Target Start/End: Original strand, 3938658 - 3938853
Alignment:
Q  108 caaatttctccaaacttgtacttcacgaatttgcgccaaatttcatcaattaattcacaagtaagttctttccttcctatttacatgcaatgtagtttgt 207  Q
    |||||||||||||||||  | | |||||||||| ||| |||||| | || ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3938658 caaatttctccaaacttcaattgcacgaatttgagcccaatttctttaactaattcacaagtaagttcttttcttcctatttacatgcaatgtagtttgt 3938757  T
Q  208 ttagggtgttagttttcataattttgagccaaatgttagttttaggttaggttaggaaattgaaaattaagcttgatttagatgttttaaagtatt 303  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||| |||||||||| || |||||||||||||| |||||    
T  3938758 ttagggtgttagttttcataattttgagcaaaatgctagttttaggttaggttagaaaattaaaaattaagcatggtttagatgttttaatgtatt 3938853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 144 - 303
Target Start/End: Complemental strand, 13953300 - 13953141
Alignment:
Q  144 caaatttcatcaattaattcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataattttgagccaaatgt 243  Q
    ||||||||||||||||||||||||||||||| | | |||| |||||||| ||||||||||||||||| ||| ||| ||| |||| |||||||| ||||||    
T  13953300 caaatttcatcaattaattcacaagtaagttatattcttcatatttacaagcaatgtagtttgtttaaggttttattttacatatttttgagcaaaatgt 13953201  T
Q  244 tagttttaggttaggttaggaaattgaaaattaagcttgatttagatgttttaaagtatt 303  Q
    |||||| |  ||||||||  |||||||||||||||| ||||||||||||||||| |||||    
T  13953200 tagtttcacattaggttataaaattgaaaattaagcatgatttagatgttttaatgtatt 13953141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 165 - 303
Target Start/End: Complemental strand, 28510583 - 28510445
Alignment:
Q  165 caagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataattttgagccaaatgttagttttaggttaggttagga 264  Q
    |||||||||  ||| ||||||||||||||||||||||| ||||||||||  ||| ||| | ||||||||||| |||||||||||||||||| |||||  |    
T  28510583 caagtaagtcattttcttcctatttacatgcaatgtaggttgtttagggctttattttacttaattttgagcaaaatgttagttttaggtttggttaaaa 28510484  T
Q  265 aattgaaaattaagcttgatttagatgttttaaagtatt 303  Q
    ||||| ||||||||| ||||||||||||||||| |||||    
T  28510483 aattgcaaattaagcatgatttagatgttttaatgtatt 28510445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 153 - 278
Target Start/End: Complemental strand, 11409514 - 11409389
Alignment:
Q  153 tcaattaattcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataattttgagccaaatgttagttttag 252  Q
    |||| ||| ||||||||||||||||| ||| | ||||||||||||||||| ||||||| |   ||| ||| | ||||||||||| |||||||||||||||    
T  11409514 tcaagtaaatcacaagtaagttcttttctttcgatttacatgcaatgtaggttgtttatgactttattttacttaattttgagcaaaatgttagttttag 11409415  T
Q  253 gttaggttaggaaattgaaaattaag 278  Q
    |||||||||| |||||| ||||||||    
T  11409414 gttaggttagaaaattgcaaattaag 11409389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 182 - 303
Target Start/End: Original strand, 41957980 - 41958112
Alignment:
Q  182 tcctatttacatgcaatgtagtttgtttagggtgttagttttcataattttgagccaaa-tgttagt----------tttaggttaggttaggaaattga 270  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||| |  |||| |||||||          ||||||||||||||| |||||||    
T  41957980 tcctatttagatgcaatgtagtttgtttagggtgctagttttcataatttttattcaaaatgttagttttagatagttttaggttaggttagaaaattga 41958079  T
Q  271 aaattaagcttgatttagatgttttaaagtatt 303  Q
    ||||||||| |||||||||||||||||||||||    
T  41958080 aaattaagcatgatttagatgttttaaagtatt 41958112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 182 - 302
Target Start/End: Complemental strand, 1804864 - 1804733
Alignment:
Q  182 tcctatttacatgcaatgtagtttgtttagggtgttagttttcataattttga-gccaaatgt----------tagttttaggttaggttaggaaattga 270  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| |  | ||||||          ||||||||||||||||||| ||||| |    
T  1804864 tcctatttacatgcaatgtagtttgtttagggtgctagttttcataatttttattcaaaatgttagttttagatagttttaggttaggttagaaaattaa 1804765  T
Q  271 aaattaagcttgatttagatgttttaaagtat 302  Q
    ||||||||| ||||||||||||||||||||||    
T  1804764 aaattaagcatgatttagatgttttaaagtat 1804733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 153 - 232
Target Start/End: Original strand, 31592594 - 31592672
Alignment:
Q  153 tcaattaattcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataatttt 232  Q
    |||| ||| |||||||||||| | || ||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  31592594 tcaagtaaatcacaagtaagtacctttcttcctatttacatgcaatgtaggttgtttagggtgtta-ttttcataatttt 31592672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 153 - 232
Target Start/End: Complemental strand, 17733895 - 17733817
Alignment:
Q  153 tcaattaattcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataatttt 232  Q
    |||| ||| |||||||||||| | || ||||||||||||||||||||||| ||||||||||||||| |||| ||||||||    
T  17733895 tcaagtaaatcacaagtaagtacctttcttcctatttacatgcaatgtaggttgtttagggtgtta-ttttaataatttt 17733817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 185 - 260
Target Start/End: Original strand, 45414538 - 45414612
Alignment:
Q  185 tatttacatgcaatgtagtttgtttagggtgttagttttcataattttgagccaaatgttagt-tttaggttaggtt 260  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||  ||||||||||||    
T  45414538 tatttacacgcaatgtagtttgtttagggtgtta-ttttcataatttt-agcaaaatgttagtgcttaggttaggtt 45414612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 211
Target Start/End: Complemental strand, 2393319 - 2393261
Alignment:
Q  153 tcaattaattcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttag 211  Q
    |||| ||| ||||||||||||  ||| ||||||||||||||||||||||| ||||||||    
T  2393319 tcaagtaaatcacaagtaagtcattttcttcctatttacatgcaatgtagcttgtttag 2393261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 91
Target Start/End: Original strand, 3938569 - 3938627
Alignment:
Q  33 gttaacaaccactatgttctgcgaataaacaagaacagaaccctcatttttccattttc 91  Q
    |||||| ||| ||| |||| |||||||||||||||||||||| ||| ||||||||||||    
T  3938569 gttaactaccgctacgttcagcgaataaacaagaacagaaccatcagttttccattttc 3938627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 4e-32; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 131 - 260
Target Start/End: Original strand, 31385547 - 31385676
Alignment:
Q  131 cacgaatttgcgccaaatttcatcaattaattcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataatt 230  Q
    |||| ||||| |||||||||| |||| ||||| ||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  31385547 cacggatttgagccaaatttcttcaagtaattaacaagtaagttattttcttcctatttacatgcaatgtaggttgtttagggtgttagttttcataatt 31385646  T
Q  231 ttgagccaaatgttagt-tttaggttaggtt 260  Q
    || ||| |||  ||||| |||||||||||||    
T  31385647 tt-agcaaaactttagtgtttaggttaggtt 31385676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 136 - 260
Target Start/End: Complemental strand, 42465181 - 42465057
Alignment:
Q  136 atttgcgccaaatttcatcaattaattcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataattttgag 235  Q
    ||||||| |||||||| |||| ||||| ||||||||||| ||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||    
T  42465181 atttgcgtcaaatttcttcaagtaattaacaagtaagttattttcttcctatttacatgaaatgtaggttgtttagggtgttagttttcataatttt-ag 42465083  T
Q  236 ccaaatgttagt-tttaggttaggtt 260  Q
    | |||| ||||| |||||||||||||    
T  42465082 caaaattttagtgtttaggttaggtt 42465057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 136 - 260
Target Start/End: Complemental strand, 15292632 - 15292509
Alignment:
Q  136 atttgcgccaaatttcatcaattaattcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataattttgag 235  Q
    ||||| |||||||||  |||| ||||| ||||||||||| |||  ||  |||||||||||| ||||||||||||||||||||| ||||||||||||| ||    
T  15292632 atttgagccaaatttgttcaagtaattaacaagtaagttattttatttttatttacatgcattgtagtttgtttagggtgtta-ttttcataatttt-ag 15292535  T
Q  236 ccaaatgttagt-tttaggttaggtt 260  Q
    | |||||||||| |||||||||||||    
T  15292534 caaaatgttagtatttaggttaggtt 15292509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 153 - 260
Target Start/End: Original strand, 13706347 - 13706453
Alignment:
Q  153 tcaattaattcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataattttgagccaaatgttagt-ttta 251  Q
    |||| ||| ||| ||||||||| |||  || ||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||| ||||    
T  13706347 tcaagtaaatcataagtaagttattttgtttctatttacatgcaatgtagtttgtttagggtgtta-ttttcataatttt-agcaaaatgttagtgttta 13706444  T
Q  252 ggttaggtt 260  Q
    |||||||||    
T  13706445 ggttaggtt 13706453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 153 - 232
Target Start/End: Complemental strand, 46201002 - 46200924
Alignment:
Q  153 tcaattaattcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataatttt 232  Q
    |||| ||| |||||||||||| | || ||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  46201002 tcaagtaaatcacaagtaagtacctttcttcctatttacatgcaatgtaggttgtttagggtgtta-ttttcataatttt 46200924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 131 - 260
Target Start/End: Complemental strand, 42058483 - 42058355
Alignment:
Q  131 cacgaatttgcgccaaatttcatcaattaattcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataatt 230  Q
    |||| ||||| |||||||||  |||| ||||| ||||||||||| |||  || |||||||||||||| ||||||||||||| || ||| ||||||||  |    
T  42058483 cacggatttgagccaaatttgttcaagtaattaacaagtaagttattttatttctatttacatgcaacgtagtttgtttagagtatta-ttttcataggt 42058385  T
Q  231 ttgagccaaatgttagt-tttaggttaggtt 260  Q
    || ||| |||||||||| |||||||||||||    
T  42058384 tt-agcaaaatgttagtgtttaggttaggtt 42058355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 197
Target Start/End: Complemental strand, 27108913 - 27108852
Alignment:
Q  136 atttgcgccaaatttcatcaattaattcacaagtaagttctttccttcctatttacatgcaa 197  Q
    ||||| |||||||||| |||| ||||| ||||||||||| ||| ||||||||||||||||||    
T  27108913 atttgagccaaatttcttcaagtaattaacaagtaagttattttcttcctatttacatgcaa 27108852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 214
Target Start/End: Original strand, 18239704 - 18239765
Alignment:
Q  153 tcaattaattcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggt 214  Q
    |||| ||| |||||||||||| | || | |||||||||| |||||||||| |||||||||||    
T  18239704 tcaagtaaatcacaagtaagtacctttcatcctatttacttgcaatgtaggttgtttagggt 18239765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 104 - 232
Target Start/End: Complemental strand, 86793 - 86660
Alignment:
Q  104 cttccaaatttctccaaacttgtacttcacgaatttgcgccaaatttcatcaattaattcacaagtaag-----ttctttccttcctatttacatgcaat 198  Q
    |||||||||||||||||||||  |   |||||||||| ||| |||||| ||||||||||||||||||||     |||||| |||||||||||||| ||||    
T  86793 cttccaaatttctccaaacttcaatagcacgaatttgagcccaatttcttcaattaattcacaagtaagctcttttcttttcttcctatttacatacaat 86694  T
Q  199 gtagtttgtttagggtgttagttttcataatttt 232  Q
    |||| |||||||||||||||||||||||||||||    
T  86693 gtaggttgtttagggtgttagttttcataatttt 86660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 143 - 232
Target Start/End: Original strand, 1550818 - 1550906
Alignment:
Q  143 ccaaatttcatcaattaattcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataatttt 232  Q
    ||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  1550818 ccaaatttcatcaat-aattcacaagtaagttattttcttcctatttacatgcaatgtagattgtttagggtattagttttcataatttt 1550906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 104 - 260
Target Start/End: Original strand, 23877890 - 23878042
Alignment:
Q  104 cttccaaatttctccaaacttgtacttcacgaatttgcgccaaatttcatcaattaattcacaagtaagttctttccttcctatttacatgcaatgtagt 203  Q
    |||| ||||||||||||||||  | | |||||||||| ||| |||||  |||||||||||||||||    ||||| |||||||||||||||||||||||     
T  23877890 cttcaaaatttctccaaacttcaagtgcacgaatttgagcccaattttttcaattaattcacaagt----tcttttcttcctatttacatgcaatgtaga 23877985  T
Q  204 ttgtttagggtgttagttttcataattttgagccaaatgttagt-tttaggttaggtt 260  Q
    |||||||||||||||||||| |||||||| ||| |||| ||||| |||| ||||||||    
T  23877986 ttgtttagggtgttagtttttataatttt-agcaaaattttagtgtttaagttaggtt 23878042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 131 - 276
Target Start/End: Complemental strand, 44119254 - 44119108
Alignment:
Q  131 cacgaatttgcgccaaatttcatcaattaattcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataatt 230  Q
    |||| ||||| ||||| |||| |||| ||||| ||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||    
T  44119254 cacggatttgagccaactttcttcaagtaattaacaagtaagttattttcttcctatttacatgcaatgtaggttgtttagggtgttagttttcatagtt 44119155  T
Q  231 ttgagccaaatgttagt-tttaggttagg-ttaggaaattgaaaatta 276  Q
    || ||| |||  ||||| ||||||||||| ||  ||||||||||||||    
T  44119154 tt-agcaaaactttagtgtttaggttaggtttttgaaattgaaaatta 44119108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 146 - 302
Target Start/End: Complemental strand, 21551578 - 21551423
Alignment:
Q  146 aatttcatcaattaattcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataattttgagccaaatgtta 245  Q
    |||||| |||| ||| |||||| |||||  ||| |||||||||||||||||| | || |||||||| || ||| ||| | |||||||  || || |||||    
T  21551578 aatttcttcaagtaaatcacaa-taagtcattttcttcctatttacatgcaacggaggttgtttagtgttttattttgcttaatttttcgcaaattgtta 21551480  T
Q  246 gttttaggttaggttaggaaattgaaaattaagcttgatttagatgttttaaagtat 302  Q
    ||||| |||||||||||  ||||  |||||||||||||||| |||||| ||| ||||    
T  21551479 gtttttggttaggttagagaatttcaaattaagcttgattttgatgttataatgtat 21551423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 146 - 302
Target Start/End: Complemental strand, 21552624 - 21552469
Alignment:
Q  146 aatttcatcaattaattcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataattttgagccaaatgtta 245  Q
    |||||| |||| ||| |||||| |||||  ||| |||||||||||||||||| | || |||||||| || ||| ||| | |||||||  || || |||||    
T  21552624 aatttcttcaagtaaatcacaa-taagtcattttcttcctatttacatgcaacggaggttgtttagtgttttattttgcttaatttttcgcaaattgtta 21552526  T
Q  246 gttttaggttaggttaggaaattgaaaattaagcttgatttagatgttttaaagtat 302  Q
    ||||| |||||||||||  ||||  |||||||||||||||| |||||| ||| ||||    
T  21552525 gtttttggttaggttagagaatttcaaattaagcttgattttgatgttataatgtat 21552469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 153 - 260
Target Start/End: Complemental strand, 23718531 - 23718425
Alignment:
Q  153 tcaattaattcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataattttgagccaaatgttagt-ttta 251  Q
    |||| ||| |||||| ||||| | || ||||||||||||||||||||||| |||||||||||  || ||||||||||||| ||| |||||||||| || |    
T  23718531 tcaagtaaatcacaaataagtacctttcttcctatttacatgcaatgtaggttgtttagggttgta-ttttcataatttt-agcaaaatgttagtgttga 23718434  T
Q  252 ggttaggtt 260  Q
    |||||||||    
T  23718433 ggttaggtt 23718425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 232
Target Start/End: Complemental strand, 20495359 - 20495281
Alignment:
Q  153 tcaattaattcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataatttt 232  Q
    |||| ||| |||||||||||| | || | ||||||||||||||||||||| ||||||||||||||| | |||||||||||    
T  20495359 tcaactaaatcacaagtaagtacctttcctcctatttacatgcaatgtaggttgtttagggtgtta-tattcataatttt 20495281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 42100549 - 42100498
Alignment:
Q  180 cttcctatttacatgcaatgtagtttgtttagggtgttagttttcataatttt 232  Q
    ||||||||||||||||||||||| || |||||||||||| |||||||||||||    
T  42100549 cttcctatttacatgcaatgtaggttatttagggtgtta-ttttcataatttt 42100498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 95
Target Start/End: Complemental strand, 18701599 - 18701552
Alignment:
Q  48 gttctgcgaataaacaagaacagaaccctcatttttccattttccaga 95  Q
    |||||||||||||||||||||| |||| ||| |||||| |||||||||    
T  18701599 gttctgcgaataaacaagaacaaaaccatcacttttcctttttccaga 18701552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1813 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: scaffold1813
Description:

Target: scaffold1813; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 153 - 260
Target Start/End: Complemental strand, 683 - 577
Alignment:
Q  153 tcaattaattcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataattttgagccaaatgttagt-ttta 251  Q
    |||| ||||| ||||||||||| ||| ||| ||||||||||||||||||||||||||||| ||||| ||||||||||||| ||| |||||||||| ||||    
T  683 tcaagtaattaacaagtaagttattttctttctatttacatgcaatgtagtttgtttaggatgtta-ttttcataatttt-agcaaaatgttagtgttta 586  T
Q  252 ggttaggtt 260  Q
    |||||||||    
T  585 ggttaggtt 577  T

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Target: scaffold0251 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 153 - 232
Target Start/End: Complemental strand, 1881 - 1803
Alignment:
Q  153 tcaattaattcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataatttt 232  Q
    |||| ||| |||||||||||| | || ||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  1881 tcaagtaaatcacaagtaagtacctttcttcctatttacatgcaatgtaggttgtttagggtgtta-ttttcataatttt 1803  T

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Target: scaffold0184 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 153 - 232
Target Start/End: Complemental strand, 28473 - 28395
Alignment:
Q  153 tcaattaattcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataatttt 232  Q
    |||| ||| |||||||||||| | || ||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  28473 tcaactaaatcacaagtaagtacctttcttcctatttacatgcaatgtaggttgtttagggtgtta-ttttcataatttt 28395  T

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Target: scaffold0078 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 153 - 232
Target Start/End: Original strand, 44371 - 44449
Alignment:
Q  153 tcaattaattcacaagtaagttctttccttcctatttacatgcaatgtagtttgtttagggtgttagttttcataatttt 232  Q
    |||| ||| |||||||||||| | || ||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  44371 tcaactaaatcacaagtaagtacctttcttcctatttacatgcaatgtaggttgtttagggtgtta-ttttcataatttt 44449  T

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Target: scaffold0916 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0916
Description:

Target: scaffold0916; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 276
Target Start/End: Original strand, 503 - 598
Alignment:
Q  182 tcctatttacatgcaatgtagtttgtttagggtgttagttttcataattttgagccaaatgttagt-tttaggttaggttaggaaattgaaaatta 276  Q
    ||||||||||||||||||||| ||||||| |   ||| ||| |  |||||| ||| |||||||||| ||||||||||||||| |||||||||||||    
T  503 tcctatttacatgcaatgtaggttgtttatgactttattttactaaattttaagcaaaatgttagtgtttaggttaggttagaaaattgaaaatta 598  T

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