View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5255_high_41 (Length: 258)
Name: NF5255_high_41
Description: NF5255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5255_high_41 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 17 - 258
Target Start/End: Complemental strand, 32590431 - 32590191
Alignment:
| Q |
17 |
aactacttcaaccaattgagccacttttaaaaaagaaataaacatatttgttaaggtacaagaaaacaaacaattttttaggtaaagaaacaataatatt |
116 |
Q |
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| T |
32590431 |
aactacttcaaccaagtgagccacttttaaaaaagaaataaacatatttgttaaggtacaagaaaacaaacaattttttaggtaaagaaacaataatatt |
32590332 |
T |
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| Q |
117 |
taataacaatatattagtaacaaagtttacatagctaatcacgttataatattactatcatagtttcgtatgccccaagcaactataacaattttagacc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
32590331 |
taataacaatatattagtaacaaagtttacatagctaatcacgttataatattactatcatagtttcgtatggcccaagcaactataacaattttagacc |
32590232 |
T |
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| Q |
217 |
cgatataataacatcaagtggtgtcatatgacctaataaacc |
258 |
Q |
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||||||||||||||||||||||||||||| |||||||||||| |
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| T |
32590231 |
cgatataataacatcaagtggtgtcatat-acctaataaacc |
32590191 |
T |
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