View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5255_high_5 (Length: 470)

Name: NF5255_high_5
Description: NF5255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5255_high_5
NF5255_high_5
[»] chr1 (5 HSPs)
chr1 (1-462)||(4366663-4367109)
chr1 (163-318)||(17561085-17561241)
chr1 (172-221)||(39379409-39379458)
chr1 (1-65)||(21855551-21855615)
chr1 (391-435)||(39379601-39379645)
[»] chr7 (27 HSPs)
chr7 (172-325)||(29431340-29431496)
chr7 (163-325)||(29454436-29454601)
chr7 (162-318)||(29898953-29899109)
chr7 (188-247)||(29859101-29859160)
chr7 (169-325)||(29895044-29895197)
chr7 (1-238)||(29476508-29476739)
chr7 (1-70)||(29895299-29895368)
chr7 (2-70)||(29881089-29881157)
chr7 (262-326)||(29922425-29922489)
chr7 (391-436)||(29894951-29894996)
chr7 (162-210)||(29884953-29885001)
chr7 (391-450)||(29106273-29106332)
chr7 (380-446)||(29873958-29874024)
chr7 (391-436)||(29074552-29074597)
chr7 (1-70)||(29867072-29867141)
chr7 (2-70)||(29922156-29922224)
chr7 (391-450)||(29898833-29898892)
chr7 (391-437)||(29858908-29858954)
chr7 (184-221)||(15572249-15572286)
chr7 (1-70)||(29859287-29859356)
chr7 (3-71)||(19326155-19326223)
chr7 (175-219)||(19637571-19637615)
chr7 (181-221)||(22021065-22021105)
chr7 (274-318)||(22088208-22088252)
chr7 (167-231)||(29445984-29446048)
chr7 (391-423)||(29884761-29884793)
chr7 (89-137)||(29899140-29899188)
[»] chr4 (3 HSPs)
chr4 (2-62)||(3561127-3561187)
chr4 (171-219)||(3561305-3561353)
chr4 (391-441)||(11849206-11849256)
[»] chr3 (1 HSPs)
chr3 (5-62)||(3625575-3625632)
[»] scaffold0242 (2 HSPs)
scaffold0242 (5-136)||(13902-14027)
scaffold0242 (5-136)||(22737-22862)
[»] chr2 (2 HSPs)
chr2 (176-218)||(18921079-18921121)
chr2 (176-216)||(18909152-18909192)
[»] chr6 (1 HSPs)
chr6 (3-71)||(24254596-24254664)
[»] chr5 (1 HSPs)
chr5 (1-65)||(24331067-24331131)


Alignment Details
Target: chr1 (Bit Score: 408; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Original strand, 4366663 - 4367109
Alignment:
Q  1 gtattgattgtatgtctctgtacccagatcaagcgaaacaataacaaattgctcaacggtaatattcttatccttaatattataatgaatgtcattgtga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4366663 gtattgattgtatgtctctgtacccagatcaagcgaaacaataacaaattgctcaacggtaatattcttatccttaatattataatgaatgtcattgtga 4366762  T
Q  101 actgctaaccaattaagcgtgccactcaaatacacacctgcattccaataatattccccaaagtccaaatgaagaggaacaataggaaaactttcaatat 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4366763 attgctaaccaattaagcgtgccactcaaatacacacctgcattccaataatattccccaaagtccaaatgaagaggaacaataggaaaactttcaatat 4366862  T
Q  201 ctctccaaacgttatcacccacacttagaatcctcacaatgcttctctgttgatttggatggtaacgggacaccaccaccttataagtatcagttgaatt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4366863 ctctccaaacgttatcacccacacttagaatcctcacaatgcttctctgttgatttggatggtaacgggacaccaccaccttataagtatcagttgaatt 4366962  T
Q  301 gtcacaaccaaacttgaagttgaaattgccatgatagctgaaagtttcaggtggagagtttcgaaaatcttgaaaacgaccaaatatcgcagatgttgtc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||               |||||||||||||||||||||||||||||||||||    
T  4366963 gtcacaaccaaacttgaagttgaaattgccatgatagctgaaagtttcag---------------aatcttgaaaacgaccaaatatcgcagatgttgtc 4367047  T
Q  401 ctggttgctgggttccataaacgaaaccagtactctctatattcatcggtcacagaataatc 462  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4367048 ctggttgctgggttccataaacgaaaccagtactctctatattcatcggtcacagaataatc 4367109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 163 - 318
Target Start/End: Original strand, 17561085 - 17561241
Alignment:
Q  163 gtccaaatgaagaggaacaataggaaaactttcaatatctctccaaacgttatcacccacactt-agaatcctcacaatgcttctctgttgatttggatg 261  Q
    |||||||| |||||||||||  || ||||||| |||||||||||||||||||||||||| |||| | ||| |||||| |||| |||  ||||  |||||     
T  17561085 gtccaaatcaagaggaacaaccgggaaactttgaatatctctccaaacgttatcacccaaacttaaaaattctcacattgctactcctttgacatggatt 17561184  T
Q  262 gtaacgggacaccaccaccttataagtatcagttgaattgtcacaaccaaacttgaa 318  Q
    |||||| ||  |||| ||||||||| | || || ||| | ||||||||||| |||||    
T  17561185 gtaacgtgaagccactaccttataaatgtcggtggaagtatcacaaccaaagttgaa 17561241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 39379409 - 39379458
Alignment:
Q  172 aagaggaacaataggaaaactttcaatatctctccaaacgttatcaccca 221  Q
    |||||||||||  || ||||||||||||| ||||||||| ||||||||||    
T  39379409 aagaggaacaaccgggaaactttcaatatttctccaaacattatcaccca 39379458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 21855551 - 21855615
Alignment:
Q  1 gtattgattgtatgtctctgtacccagatcaagcgaaacaataacaaattgctcaacggtaatat 65  Q
    |||||||||||||||||| ||  ||| |||||| |||||||| ||||| || ||||| |||||||    
T  21855551 gtattgattgtatgtctccgtctccaaatcaagagaaacaatcacaaactggtcaacagtaatat 21855615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 435
Target Start/End: Original strand, 39379601 - 39379645
Alignment:
Q  391 agatgttgtcctggttgctgggttccataaacgaaaccagtactc 435  Q
    ||||||| |||| || ||||||||||||||||| |||||||||||    
T  39379601 agatgttttcctagtggctgggttccataaacggaaccagtactc 39379645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 8e-25; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 172 - 325
Target Start/End: Original strand, 29431340 - 29431496
Alignment:
Q  172 aagaggaacaataggaaaactttcaatatctctccaaacgttatcacccacacttagaatcctcacaatgcttctctgttga---tttggatggtaacgg 268  Q
    ||||||||||| ||| ||||||||||||||||||||||| ||||||| || ||||| |||  | ||| |||||||| ||| |   ||||||| |||||||    
T  29431340 aagaggaacaacagggaaactttcaatatctctccaaacattatcactcaaacttaaaattttgacattgcttctcagttcatcttttggattgtaacgg 29431439  T
Q  269 gacaccaccaccttataagtatcagttgaattgtcacaaccaaacttgaagttgaaa 325  Q
    ||| |||||||||||||||| || |||| ||||||| ||||||| || || ||||||    
T  29431440 gacgccaccaccttataagtgtcggttgcattgtcaaaaccaaagttaaacttgaaa 29431496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 163 - 325
Target Start/End: Original strand, 29454436 - 29454601
Alignment:
Q  163 gtccaaatgaagaggaacaataggaaaactttcaatatctctccaaacgttatcacccacacttagaatcctcacaatgcttct---ctgttgatttgga 259  Q
    |||||||||||||||| ||| ||| ||||||||||||||||||||||| ||||||  || |||||||||  | ||| |||||||    || || | ||||    
T  29454436 gtccaaatgaagaggagcaacagggaaactttcaatatctctccaaacattatcatgcaaacttagaattttgacattgcttctgcagtgatgttctgga 29454535  T
Q  260 tggtaacgggacaccaccaccttataagtatcagttgaattgtcacaaccaaacttgaagttgaaa 325  Q
    | |||||||||| ||||| | || || |||||||||||||||||| | ||||| ||||| ||||||    
T  29454536 tcgtaacgggacgccaccgctttctaggtatcagttgaattgtcatagccaaagttgaacttgaaa 29454601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 162 - 318
Target Start/End: Complemental strand, 29899109 - 29898953
Alignment:
Q  162 agtccaaatgaagaggaacaataggaaaactttcaatatctctccaaacgttatcacccacacttagaatcctcacaatgcttctctgttgatttggatg 261  Q
    ||||| |||||||||||||||  || ||||||||||||||||||||||| |||||||| | ||| |||||  ||||| ||||||||  | ||  |||||     
T  29899109 agtccgaatgaagaggaacaactgggaaactttcaatatctctccaaacattatcaccaaaactgagaattttcacattgcttctcaatcgaactggatt 29899010  T
Q  262 gtaacgggacaccaccaccttataagtatcag-ttgaattgtcacaaccaaacttgaa 318  Q
    ||||||| |  |||||||||||||||| || | ||||||||||| ||||||| |||||    
T  29899009 gtaacggtatgccaccaccttataagt-tctgtttgaattgtcaaaaccaaatttgaa 29898953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 188 - 247
Target Start/End: Complemental strand, 29859160 - 29859101
Alignment:
Q  188 aaactttcaatatctctccaaacgttatcacccacacttagaatcctcacaatgcttctc 247  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||    
T  29859160 aaactttcaatatctctccaaacgttatcacccaaacttagaattctcacattgcttctc 29859101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 169 - 325
Target Start/End: Complemental strand, 29895197 - 29895044
Alignment:
Q  169 atgaagaggaacaataggaaaactttcaatatctctccaaacgttatcacccacacttagaatcctcacaatgcttctctgttgatttggatggtaacgg 268  Q
    ||||||||| |||  ||| |||||||||||||||||||||| |||   ||||||| ||||||| || ||||||||||||| || |  ||||| | |||      
T  29895197 atgaagagggacagcagggaaactttcaatatctctccaaaagtt---acccacagttagaattctgacaatgcttctcttttcaagtggattgcaacaa 29895101  T
Q  269 gacaccaccaccttataagtatcagttgaattgtcacaaccaaacttgaagttgaaa 325  Q
     || ||||||||||||||||  | |||||||||||| |||||||| |||| ||||||    
T  29895100 tacgccaccaccttataagtgccggttgaattgtcataaccaaacctgaacttgaaa 29895044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 29476508 - 29476739
Alignment:
Q  1 gtattgattgtatgtctctgtacccagatcaagcgaaacaataacaaattgctcaacggtaatattcttatccttaatattataatgaatgtcattgtga 100  Q
    |||||||||||||||||| || || | ||| || |||||||||||||| ||||||||  ||| |||      |||||||| ||| | || ||||||||||    
T  29476508 gtattgattgtatgtctcagttcctaaatcgagtgaaacaataacaaactgctcaactctaagatt------cttaatatcatagtcaaagtcattgtga 29476601  T
Q  101 actgctaaccaattaagcgtgccactcaaatacacacctgcattccaataatattccccaaagtccaaatgaagaggaacaataggaaaactttcaatat 200  Q
    |  || ||||||||||| |||| ||||||||||||| |   || |  || || ||| ||||||| | |||||| ||||||||  || ||||||| ||| |    
T  29476602 atagccaaccaattaagagtgctactcaaatacacagcattatgcacatcattttcaccaaagtacgaatgaataggaacaacggggaaactttgaatct 29476701  T
Q  201 ctctccaaacgttatcacccacacttagaatcctcaca 238  Q
    |||||||||| ||||| || | ||| ||||| ||||||    
T  29476702 ctctccaaacattatctccaaaactgagaattctcaca 29476739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 29895368 - 29895299
Alignment:
Q  1 gtattgattgtatgtctctgtacccagatcaagcgaaacaataacaaattgctcaacggtaatattctta 70  Q
    |||||||||||| ||||| || ||||| |||||||||||||||||||||||||||||  ||| |||||||    
T  29895368 gtattgattgtaagtctccgttcccagctcaagcgaaacaataacaaattgctcaactctaagattctta 29895299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 29881157 - 29881089
Alignment:
Q  2 tattgattgtatgtctctgtacccagatcaagcgaaacaataacaaattgctcaacggtaatattctta 70  Q
    ||||||||||||||||| || |||| |||||| ||||||||||||||||| ||||| ||||||| ||||    
T  29881157 tattgattgtatgtctcagtccccaaatcaagtgaaacaataacaaattggtcaacagtaatatcctta 29881089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 262 - 326
Target Start/End: Original strand, 29922425 - 29922489
Alignment:
Q  262 gtaacgggacaccaccaccttataagtatcagttgaattgtcacaaccaaacttgaagttgaaat 326  Q
    ||||||| || ||| |||||||||||||||||||||||||||| ||||||| ||||| |||||||    
T  29922425 gtaacggaacgccaacaccttataagtatcagttgaattgtcaaaaccaaatttgaaattgaaat 29922489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 391 - 436
Target Start/End: Complemental strand, 29894996 - 29894951
Alignment:
Q  391 agatgttgtcctggttgctgggttccataaacgaaaccagtactct 436  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||    
T  29894996 agatgttgtcctggtggctgggttcgataaacgaaaccagtactct 29894951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 29885001 - 29884953
Alignment:
Q  162 agtccaaatgaagaggaacaataggaaaactttcaatatctctccaaac 210  Q
    |||||| ||||||||||||||  ||||||||||||||||||||||||||    
T  29885001 agtccagatgaagaggaacaactggaaaactttcaatatctctccaaac 29884953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 391 - 450
Target Start/End: Complemental strand, 29106332 - 29106273
Alignment:
Q  391 agatgttgtcctggttgctgggttccataaacgaaaccagtactctctatattcatcggt 450  Q
    ||||||||||||||| ||||||||||||||||| | |||||||||| |||| || |||||    
T  29106332 agatgttgtcctggtggctgggttccataaacggagccagtactctatataatcgtcggt 29106273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 380 - 446
Target Start/End: Complemental strand, 29874024 - 29873958
Alignment:
Q  380 ccaaatatcgcagatgttgtcctggttgctgggttccataaacgaaaccagtactctctatattcat 446  Q
    |||||||| | ||||||| ||||||| |||||||||||||||| || |||||||||| ||| |||||    
T  29874024 ccaaatattggagatgttatcctggtggctgggttccataaacaaagccagtactctttatcttcat 29873958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 391 - 436
Target Start/End: Complemental strand, 29074597 - 29074552
Alignment:
Q  391 agatgttgtcctggttgctgggttccataaacgaaaccagtactct 436  Q
    ||||||||||||||| ||||||||||||||||| | ||||||||||    
T  29074597 agatgttgtcctggtggctgggttccataaacggagccagtactct 29074552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 29867141 - 29867072
Alignment:
Q  1 gtattgattgtatgtctctgtacccagatcaagcgaaacaataacaaattgctcaacggtaatattctta 70  Q
    ||||||||||||| |||| || |||| |||||| |||||||||||||| || ||||| ||||||| ||||    
T  29867141 gtattgattgtatttctcagtccccaaatcaagtgaaacaataacaaactggtcaacagtaatatcctta 29867072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 29922156 - 29922224
Alignment:
Q  2 tattgattgtatgtctctgtacccagatcaagcgaaacaataacaaattgctcaacggtaatattctta 70  Q
    ||||||||||||||||| || || | |||||| ||||| |||||||| || ||||| ||||||||||||    
T  29922156 tattgattgtatgtctccgtccctaaatcaagagaaacgataacaaaatgttcaactgtaatattctta 29922224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 450
Target Start/End: Complemental strand, 29898892 - 29898833
Alignment:
Q  391 agatgttgtcctggttgctgggttccataaacgaaaccagtactctctatattcatcggt 450  Q
    ||||||||||||||| ||||||||||||||||| |   ||||||||  ||||||||||||    
T  29898892 agatgttgtcctggtggctgggttccataaacggagatagtactctagatattcatcggt 29898833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 391 - 437
Target Start/End: Complemental strand, 29858954 - 29858908
Alignment:
Q  391 agatgttgtcctggttgctgggttccataaacgaaaccagtactctc 437  Q
    |||||||||||| || ||||||||||||||||| |||||||| ||||    
T  29858954 agatgttgtccttgtggctgggttccataaacggaaccagtaatctc 29858908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 15572249 - 15572286
Alignment:
Q  184 aggaaaactttcaatatctctccaaacgttatcaccca 221  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  15572249 aggaaaacaatcaatatctctccaaacgttatcaccca 15572286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 29859356 - 29859287
Alignment:
Q  1 gtattgattgtatgtctctgtacccagatcaagcgaaacaataacaaattgctcaacggtaatattctta 70  Q
    ||||||||||||||| ||  | |||| |||||| ||||||||||||||||| || || ||||||| ||||    
T  29859356 gtattgattgtatgtttcactccccaaatcaagtgaaacaataacaaattgttcgacagtaatatcctta 29859287  T

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Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 19326155 - 19326223
Alignment:
Q  3 attgattgtatgtctctgtacccagatcaagcgaaacaataacaaattgctcaacggtaatattcttat 71  Q
    |||| ||||||||||| ||||| |||||||| || | ||| | ||||||||| |||||||||| |||||    
T  19326155 attgcttgtatgtctcagtaccaagatcaagggagataatcataaattgctcgacggtaatatccttat 19326223  T

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Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 219
Target Start/End: Original strand, 19637571 - 19637615
Alignment:
Q  175 aggaacaataggaaaactttcaatatctctccaaacgttatcacc 219  Q
    |||||| ||||||||||||| ||||| ||||||||| ||||||||    
T  19637571 aggaaccataggaaaactttgaatatttctccaaactttatcacc 19637615  T

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Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 22021105 - 22021065
Alignment:
Q  181 aataggaaaactttcaatatctctccaaacgttatcaccca 221  Q
    |||||||||||||||||||| ||||||||| ||||| ||||    
T  22021105 aataggaaaactttcaatatttctccaaacattatcgccca 22021065  T

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Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 318
Target Start/End: Complemental strand, 22088252 - 22088208
Alignment:
Q  274 caccaccttataagtatcagttgaattgtcacaaccaaacttgaa 318  Q
    ||||||||||||||| || |||||||| ||| |||||||||||||    
T  22088252 caccaccttataagtttctgttgaattatcataaccaaacttgaa 22088208  T

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Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 167 - 231
Target Start/End: Original strand, 29445984 - 29446048
Alignment:
Q  167 aaatgaagaggaacaataggaaaactttcaatatctctccaaacgttatcacccacacttagaat 231  Q
    ||||||||||||||||  || ||||||| ||| | ||||||||| |||||||| | |||||||||    
T  29445984 aaatgaagaggaacaacggggaaactttgaatctgtctccaaacattatcacctatacttagaat 29446048  T

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Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 423
Target Start/End: Complemental strand, 29884793 - 29884761
Alignment:
Q  391 agatgttgtcctggttgctgggttccataaacg 423  Q
    ||||||||||||||| |||||||||||||||||    
T  29884793 agatgttgtcctggtggctgggttccataaacg 29884761  T

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Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 137
Target Start/End: Complemental strand, 29899188 - 29899140
Alignment:
Q  89 atgtcattgtgaactgctaaccaattaagcgtgccactcaaatacacac 137  Q
    |||| ||||||||  |||||||||||||| |||||||||||||| ||||    
T  29899188 atgttattgtgaatagctaaccaattaagagtgccactcaaatatacac 29899140  T

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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 3561127 - 3561187
Alignment:
Q  2 tattgattgtatgtctctgtacccagatcaagcgaaacaataacaaattgctcaacggtaa 62  Q
    ||||||||||||||||| || |||||||||||||||||||||||||| |||||||| ||||    
T  3561127 tattgattgtatgtctcagttcccagatcaagcgaaacaataacaaactgctcaactgtaa 3561187  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 3561305 - 3561353
Alignment:
Q  171 gaagaggaacaataggaaaactttcaatatctctccaaacgttatcacc 219  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  3561305 gaagaggaacaataggaaaactttcaatatttctccaaacattatcacc 3561353  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 441
Target Start/End: Original strand, 11849206 - 11849256
Alignment:
Q  391 agatgttgtcctggttgctgggttccataaacgaaaccagtactctctata 441  Q
    ||||||||||||||| ||||||||||||||||| | |||||||||| ||||    
T  11849206 agatgttgtcctggtggctgggttccataaacggagccagtactctgtata 11849256  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 3625632 - 3625575
Alignment:
Q  5 tgattgtatgtctctgtacccagatcaagcgaaacaataacaaattgctcaacggtaa 62  Q
    |||||||||||||| || |||| |||||| ||||||||||||||||||||||| ||||    
T  3625632 tgattgtatgtctcagtccccaaatcaagtgaaacaataacaaattgctcaacagtaa 3625575  T

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Target: scaffold0242 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 13902 - 14027
Alignment:
Q  5 tgattgtatgtctctgtacccagatcaagcgaaacaataacaaattgctcaacggtaatattcttatccttaatattataatgaatgtcattgtgaactg 104  Q
    |||||||||||||| || | || ||| || |||||||||||||| ||||||||  ||| |||||||      |||| ||| | || |||||||||||| |    
T  13902 tgattgtatgtctcagttctcaaatcgagtgaaacaataacaaactgctcaactttaagattctta------atatcatagtcaaagtcattgtgaacag 13995  T
Q  105 ctaaccaattaagcgtgccactcaaatacaca 136  Q
    | ||||||||||| |||| |||||||||||||    
T  13996 ccaaccaattaagagtgctactcaaatacaca 14027  T

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Target: scaffold0242; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 22737 - 22862
Alignment:
Q  5 tgattgtatgtctctgtacccagatcaagcgaaacaataacaaattgctcaacggtaatattcttatccttaatattataatgaatgtcattgtgaactg 104  Q
    |||||||||||||| || | || ||| || |||||||||||||| ||||||||  ||| |||||||      |||| ||| | || |||||||||||| |    
T  22737 tgattgtatgtctcagttctcaaatcgagtgaaacaataacaaactgctcaactttaagattctta------atatcatagtcaaagtcattgtgaacag 22830  T
Q  105 ctaaccaattaagcgtgccactcaaatacaca 136  Q
    | ||||||||||| |||| |||||||||||||    
T  22831 ccaaccaattaagagtgctactcaaatacaca 22862  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 218
Target Start/End: Original strand, 18921079 - 18921121
Alignment:
Q  176 ggaacaataggaaaactttcaatatctctccaaacgttatcac 218  Q
    ||||||||||||||||||| |||||| |||||||| |||||||    
T  18921079 ggaacaataggaaaactttgaatatccctccaaacattatcac 18921121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 18909152 - 18909192
Alignment:
Q  176 ggaacaataggaaaactttcaatatctctccaaacgttatc 216  Q
    ||||||||||||||||||  ||||||||||||||| |||||    
T  18909152 ggaacaataggaaaacttggaatatctctccaaacattatc 18909192  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 24254596 - 24254664
Alignment:
Q  3 attgattgtatgtctctgtacccagatcaagcgaaacaataacaaattgctcaacggtaatattcttat 71  Q
    |||| ||||||||||| ||||| |||||||| || | ||| |  ||||||||||||||||||| |||||    
T  24254596 attgcttgtatgtctcagtaccaagatcaagggagataatcatgaattgctcaacggtaatatccttat 24254664  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 24331067 - 24331131
Alignment:
Q  1 gtattgattgtatgtctctgtacccagatcaagcgaaacaataacaaattgctcaacggtaatat 65  Q
    |||||||||||||||||| ||  ||| |||||| |||||||| ||||| || ||||| |||||||    
T  24331067 gtattgattgtatgtctccgtctccaaatcaagagaaacaatcacaaactggtcaacagtaatat 24331131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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