View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5255_high_58 (Length: 202)
Name: NF5255_high_58
Description: NF5255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5255_high_58 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 102; Significance: 7e-51; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 89 - 202
Target Start/End: Original strand, 5809261 - 5809374
Alignment:
| Q |
89 |
acataaacgaatgaaaaattaaatagagattataacagaactagtctataaggctataagatgtgataataagctatcatatgtacctcaccaaaataaa |
188 |
Q |
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| T |
5809261 |
acataaaggaatgaaaaattaaatagagattataacagaagtagtctataagcctataagatgtgataataagctatcatatgtacctcaccaaaataaa |
5809360 |
T |
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| Q |
189 |
gaaaatacatagac |
202 |
Q |
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| T |
5809361 |
gaaaatacatagac |
5809374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 37754630 - 37754750
Alignment:
| Q |
18 |
atattaggacacaagacttttctccaaacacatattctgaaagacgaaatacgattgaaagttggattgagacataaacgaatgaaaaattaaatagaga |
117 |
Q |
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| T |
37754630 |
atatcaggacacaagactgttccacaaccacatattatgaaagaagaaatactatcgaaagttgaattgagaaataattgaatgaaaactttattagaaa |
37754729 |
T |
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| Q |
118 |
ttataacagaactagtctata |
138 |
Q |
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| T |
37754730 |
ttataataaaactaggctata |
37754750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 37760604 - 37760724
Alignment:
| Q |
18 |
atattaggacacaagacttttctccaaacacatattctgaaagacgaaatacgattgaaagttggattgagacataaacgaatgaaaaattaaatagaga |
117 |
Q |
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| T |
37760604 |
atatcaggacacaagactgttccacaaccacatattatgaaagaagaaatactatcgaaagttgaattgagaaataattgaatgaaaactttattagaaa |
37760703 |
T |
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| Q |
118 |
ttataacagaactagtctata |
138 |
Q |
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| T |
37760704 |
ttataataaaactaggctata |
37760724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 37738773 - 37738892
Alignment:
| Q |
18 |
atattaggacacaagacttttctccaaacacatattctgaaagacgaaatacgattgaaagttggattgagacataaacgaatgaaaaattaaatagaga |
117 |
Q |
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| T |
37738773 |
atattaggacacaagactgttccacaaccacatattatggaagaagaaatacg-ttgaaagttgaattaagacataattgaaacaaaactttagtagaaa |
37738871 |
T |
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| Q |
118 |
ttataacagaactagtctata |
138 |
Q |
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| T |
37738872 |
ttataacaaaactaggctata |
37738892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 46 - 138
Target Start/End: Complemental strand, 38606051 - 38605959
Alignment:
| Q |
46 |
cacatattctgaaagacgaaatacgattgaaagttggattgagacataaacgaatgaaaaattaaatagagattataacagaactagtctata |
138 |
Q |
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|||||||| ||||||| ||||||| ||||||||||| ||| |||||||| ||||||||| || | |||| ||||||| | |||||| ||||| |
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| T |
38606051 |
cacatattatgaaagaagaaatactattgaaagttgaattaagacataattgaatgaaaactttattagaaattataataaaactaggctata |
38605959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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