View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5255_high_6 (Length: 463)
Name: NF5255_high_6
Description: NF5255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5255_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 59 - 446
Target Start/End: Complemental strand, 17815019 - 17814617
Alignment:
| Q |
59 |
ttctcctttagagtggcaacaacaacagttttaatgtcaaagaaaacgggattcgccggttgaaacccttggacaactttgtcgaggttgtcaagtcttc |
158 |
Q |
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| T |
17815019 |
ttctcctttagagtggcaacaacaacagttttaatgtcaaagaaaacgggattcgccggttgaaacccttggacaactttgtcgaggttgtcaagtcttc |
17814920 |
T |
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| Q |
159 |
cgtaatctccaagtgtgatgtgttc---------------ttcgtcatatgagtaatcacttaaacttggtagtgaaacagctgctgctatttgtgcttc |
243 |
Q |
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| T |
17814919 |
cgtaatctccaagtgtgatgtgttccacgtctcacgtttcttcgtcatatgagtaatcacttaaacttggtagtgaaacagctgctgctatttgtgcttc |
17814820 |
T |
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| Q |
244 |
tcttgcttctcggatggctttccagattgctcttcaagttttatcgatgtcgaaatcaaatagcaagctgtacttgtatctacaccacgcataaaacaac |
343 |
Q |
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| T |
17814819 |
tcttgcttctcgaatggctttccagattgctcttcaagttttatcgatgtcgaaatcaaatagcaagctgtacttgtatctacaccacgcataaaacaac |
17814720 |
T |
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| Q |
344 |
ttgtaaggattctatgaagagcttggagaatatcaacttttcaatggtcaatggaaattacctccgtaattgaatcaaaagttccctaatttcagacaac |
443 |
Q |
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| T |
17814719 |
ctgtaaggattctatgaagaccttggagaatatcaacttttcaatggtcaatgaaaattacctccgtaattgaatcaaaagttccctaatttcagacaac |
17814620 |
T |
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| Q |
444 |
tta |
446 |
Q |
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| T |
17814619 |
tta |
17814617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 17815056 - 17815022
Alignment:
| Q |
1 |
ttctaaaaaatatgtcatatgtgcattacaatcat |
35 |
Q |
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| T |
17815056 |
ttctaaaaaatatgtcatatgtgcattacaatcat |
17815022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 79 - 174
Target Start/End: Original strand, 9303970 - 9304065
Alignment:
| Q |
79 |
aacaacagttttaatgtcaaagaaaacgggattcgccggttgaaacccttggacaactttgtcgaggttgtcaagtcttccgtaatctccaagtgt |
174 |
Q |
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| T |
9303970 |
aacaacggttttgatatcaaagaatacggggttcacccgctgaaaccgttgggaaacttcatcgaggttgtcaagtctcctgtaatctccaagtgt |
9304065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 9941674 - 9941747
Alignment:
| Q |
110 |
ttcgccggttgaaacccttggacaactttgtcgaggttgtcaagtcttccgtaatctccaagtgtgatgtgttc |
183 |
Q |
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| T |
9941674 |
ttcgccagttggaacccttgggcaacatcatcgatgttgttgagtcttccataatctccaagtgtgatgcgttc |
9941747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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