View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5255_low_1 (Length: 612)
Name: NF5255_low_1
Description: NF5255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5255_low_1 |
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| [»] scaffold1944 (1 HSPs) |
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| [»] scaffold1790 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 548; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 18 - 605
Target Start/End: Complemental strand, 11587985 - 11587398
Alignment:
| Q |
18 |
aatcatggataaacacattggtccattgaaaagctgtaatattcgacatttaggtatgagttgtgtcaatggagatgttgtgcgatggatgaagaaacta |
117 |
Q |
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| T |
11587985 |
aatcatggataaacacattggtccattgaaaagctgtaatattcggcatttaggtatgagttgtgtcaatggagatgttgtgcggtggatgaagaaacta |
11587886 |
T |
|
| Q |
118 |
cttgagaaaggggtggtaaaggtttcaatgggacttgagtcctatgaatattttataacactaaattatattcttttaggggaagctaaacgaactttgg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
11587885 |
cttgagaaaggggtggtaaaggtttcaatgggacttgagtcctatgaatattttataacactaaattatattcttttggggcaagctaaacgaactttgg |
11587786 |
T |
|
| Q |
218 |
atttaccttttgagattttcactagttttgaggttcttgagttgaatcattattgttttataactacaccttcccatgatctcaaccaggttttgaaaac |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
11587785 |
atttaccttttgagattttcactagttttgaggttcttgagttgaatcattattgttttataactacaccttcccttgatctcaaccaggttttgaaaac |
11587686 |
T |
|
| Q |
318 |
tcttaccctcaatcaagtgtgtgtttcatcaagcaattttcaagagattatttctcactgttcatctcttgaaaacctcacacttaataactgtgatttc |
417 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
11587685 |
tcttaccctcaatcaagtgtgtgtttcatcaaacaattttcaagagattatttctcattgttcatctcttgaaaacctcacacttaataactgtgatttc |
11587586 |
T |
|
| Q |
418 |
tctgaagatgaagttaacattgatagttcaagtctcaaatattttaaaattttgcatatgaatgtgcaaaagatgttggtttctgcagctaatatggaag |
517 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11587585 |
tctggagatgaagttaacattgatagttcaagtctcaaatattttaaaattttggatatgaatgtgcaaaagatgttggtttctgcagctaatatggaag |
11587486 |
T |
|
| Q |
518 |
tcatagagattgaatccatcatttgtattgataaagatctagcttttgagaccccaaaacttcatattcttcgtgttcatgatgatgt |
605 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
11587485 |
tcatagagattgaatccatcatttgtattgataaagatctagcttttgagaccccaaaacttcatattcttcgtgttcataatgatgt |
11587398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 6e-20; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 374 - 592
Target Start/End: Complemental strand, 29787634 - 29787416
Alignment:
| Q |
374 |
actgttcatctcttgaaaacctcacacttaataactgtgatttctctgaagatgaagttaacattgatagttcaagtctcaaatattttaaaattttgca |
473 |
Q |
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|||||||||||||||||||||| || | | ||||||||||||| ||||||| |||| |||| ||| ||||||| |||||| ||||||||| | |
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| T |
29787634 |
actgttcatctcttgaaaaccttaccgtcgagaactgtgatttcttaagagatgaacttaagattgtaagtccaagtctgaaatatattaaaatttgtaa |
29787535 |
T |
|
| Q |
474 |
tatgaatgtgcaaaagatgttggtttctgcagctaatatggaagtcatagagattgaatccatcatttgtattgataaagatctagcttttgagacccca |
573 |
Q |
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|||||||||| | ||| ||| |||||||| |||| | ||||||||||||||||| ||||| ||||||| | || ||||| | | |||||| ||||| |
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| T |
29787534 |
gatgaatgtgcttaggattttgatttctgcatttaatgttgaagtcatagagattgactccattatttgtagtcatcaagatttggtctttgaggcccca |
29787435 |
T |
|
| Q |
574 |
aaacttcatattcttcgtg |
592 |
Q |
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|||||||| ||||||||| |
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| T |
29787434 |
aaacttcaagttcttcgtg |
29787416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 370 - 575
Target Start/End: Original strand, 30372358 - 30372563
Alignment:
| Q |
370 |
tctcactgttcatctcttgaaaacctcacacttaataactgtgatttctctgaagatgaagttaacattgatagttcaagtctcaaatattttaaaattt |
469 |
Q |
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||||| ||||| || |||||||| ||||| ||||| || ||| |||| | || ||||| || || |||||||| |||||||||||||||||||| ||| |
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| T |
30372358 |
tctcaatgttcgtcacttgaaaatctcacccttaaaaaatgtaatttatttggagatggggtcaagattgatagcccaagtctcaaatattttaaatttt |
30372457 |
T |
|
| Q |
470 |
tgcatatgaatgtgcaaaagatgttggtttctgcagctaatatggaagtcatagagattgaatccatcatttgtattgataaagatctagcttttgagac |
569 |
Q |
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| |||||| ||||| ||||||||| |||||||| |||| || ||||| || ||||||| | |||| || ||| | || |||||||| ||| ||||| |
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| T |
30372458 |
ttgatatgaccgtgcataagatgttgatttctgcaactaaaattgaagtgattgagattggaaccattatatgttataatgaagatctaattttcgagac |
30372557 |
T |
|
| Q |
570 |
cccaaa |
575 |
Q |
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|||||| |
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| T |
30372558 |
cccaaa |
30372563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 430 - 522
Target Start/End: Original strand, 30376134 - 30376226
Alignment:
| Q |
430 |
gttaacattgatagttcaagtctcaaatattttaaaattttgcatatgaatgtgcaaaagatgttggtttctgcagctaatatggaagtcata |
522 |
Q |
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||||| ||||||||| ||||||| |||||||||||| |||| | |||| |||||||||||| ||||||||| || | || || ||||||||| |
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| T |
30376134 |
gttaaaattgatagtccaagtctaaaatattttaaattttttaaaatgattgtgcaaaagattttggtttctacatccaacattgaagtcata |
30376226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 103 - 164
Target Start/End: Original strand, 30372097 - 30372158
Alignment:
| Q |
103 |
tggatgaagaaactacttgagaaaggggtggtaaaggtttcaatgggacttgagtcctatga |
164 |
Q |
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| T |
30372097 |
tggatgaagaaactactagagaaaggggtagtaaacgtttcattggaacttgaatcccatga |
30372158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 292
Target Start/End: Original strand, 29837482 - 29837557
Alignment:
| Q |
217 |
gatttaccttttgagattttcactagttttgaggttcttgagttgaatcattattgttttataactacaccttccc |
292 |
Q |
| |
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||||||||||||||| ||||| | |||||| |||||||||||||||| | ||| |||| |||||||||| |||| |
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| T |
29837482 |
gatttaccttttgaggttttctccagttttaaggttcttgagttgaagaactatcattttttaactacaccctccc |
29837557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 430 - 576
Target Start/End: Original strand, 30379256 - 30379402
Alignment:
| Q |
430 |
gttaacattgatagttcaagtctcaaatattttaaaattttgcatatgaatgtgcaaaagatgttggtttctgcagctaatatggaagtcatagagattg |
529 |
Q |
| |
|
||||| ||||||||| |||| | |||||||||||| |||| | |||| |||||||||||| |||||||| || | || || ||||||||| |||||| |
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| T |
30379256 |
gttaagattgatagtctaagtataaaatattttaaattttttaaaatgattgtgcaaaagattttggtttccacatccaacattgaagtcataaagattg |
30379355 |
T |
|
| Q |
530 |
aatccatcatttgtattgataaagatctagcttttgagaccccaaaa |
576 |
Q |
| |
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| ||| ||||||| | |||||||| | ||||||||||| |||| |
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| T |
30379356 |
gcttcattatttgtaatcataaagatttgttttttgagaccctaaaa |
30379402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 493 - 557
Target Start/End: Original strand, 29856286 - 29856350
Alignment:
| Q |
493 |
ttggtttctgcagctaatatggaagtcatagagattgaatccatcatttgtattgataaagatct |
557 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||| ||| | ||||||| | || ||||||| |
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| T |
29856286 |
ttggtttctgcatttaacatggaagtcatagagattgactccgttatttgtaatcatgaagatct |
29856350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1944 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold1944
Description:
Target: scaffold1944; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 430 - 528
Target Start/End: Complemental strand, 503 - 405
Alignment:
| Q |
430 |
gttaacattgatagttcaagtctcaaatattttaaaattttgcatatgaatgtgcaaaagatgttggtttctgcagctaatatggaagtcatagagatt |
528 |
Q |
| |
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||||| ||||||||| ||||||| |||||||||||| |||| | |||| |||||||||||| ||||||||| || | || || ||||||||| ||||| |
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| T |
503 |
gttaaaattgatagtccaagtctaaaatattttaaattttttaaaatgattgtgcaaaagattttggtttctacatccaacattgaagtcataaagatt |
405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1790 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold1790
Description:
Target: scaffold1790; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 430 - 528
Target Start/End: Complemental strand, 644 - 546
Alignment:
| Q |
430 |
gttaacattgatagttcaagtctcaaatattttaaaattttgcatatgaatgtgcaaaagatgttggtttctgcagctaatatggaagtcatagagatt |
528 |
Q |
| |
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||||| ||||||||| ||||||| |||||||||||| |||| | |||| |||||||||||| ||||||||| || | || || ||||||||| ||||| |
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| T |
644 |
gttaaaattgatagtccaagtctaaaatattttaaattttttaaaatgattgtgcaaaagattttggtttctacatccaacattgaagtcataaagatt |
546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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