View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5255_low_10 (Length: 433)
Name: NF5255_low_10
Description: NF5255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5255_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 132; Significance: 2e-68; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 79 - 330
Target Start/End: Original strand, 4647837 - 4648091
Alignment:
| Q |
79 |
aagcttacaattttacttatatgtcaaagtgaatgttgttactcttatggtttctctcacactttgagttatacttttgacctttcaaattcttttacag |
178 |
Q |
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| T |
4647837 |
aagcttacaattttacttatatgtcaaagtgaatgttgttactcttatggtttctctcacactttgagttatatttttgacctttcaatttcttttccag |
4647936 |
T |
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| Q |
179 |
aataagcacaagaaaacaataaaaatgttt--gtcgcagacgtataataaatgaatgtattgtaaattctat----tacttattacaatagttttttact |
272 |
Q |
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| T |
4647937 |
aacaagcagaagaagacaataaaaatgttttagtcacaaatatgtaataaatatatgcattgtaaattctattacgtacttattacaatactttattact |
4648036 |
T |
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| Q |
273 |
aacagaaagaccgacactaatgcgttcttctatccactcctttttctattgtgcttaa |
330 |
Q |
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| T |
4648037 |
aacggaaagaccaacaataatgtgttgttctatcca---ctttttctattgtgcttaa |
4648091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 4656201 - 4656424
Alignment:
| Q |
19 |
cctacgagggggtgtcattatgcatgaatggtcaatgcatatgcatttacgagtaaag---------aa-----------aagcttacaattttacttat |
98 |
Q |
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| T |
4656201 |
cctacgagggggtgtcattatgcatgaatggtcaatgcatatgcatttacgagtaaagttggaaactaactgtattacttaagtttacaattttacttat |
4656300 |
T |
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| Q |
99 |
atgtcaaagtgaatgttgttactcttatggtttctctcacactttgagttatacttttgacctttcaaattcttttacagaataagcacaagaaaacaat |
198 |
Q |
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| T |
4656301 |
atgtcacggtgaatgttgttactcttatggtttctctcacactttgagttatgcttttgacctttcaaattcttttacagaataagcacaagaaaacaat |
4656400 |
T |
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| Q |
199 |
aaaaatgtttgtcgcagacgtata |
222 |
Q |
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| T |
4656401 |
aaaaatgtttgtcacagacatata |
4656424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 4647755 - 4647812
Alignment:
| Q |
19 |
cctacgagggggtgtcattatgcatgaatggtcaatgcatatgcatttacgagtaaag |
76 |
Q |
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| T |
4647755 |
cctatgagggggtgtcattatgcatgaatggtcaatgtatatgcatttacgagtaaag |
4647812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 353 - 414
Target Start/End: Original strand, 4648165 - 4648226
Alignment:
| Q |
353 |
tctctttattatttatgtttcatattaatcctgcagttttatttttacgtatgtataaaaca |
414 |
Q |
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| T |
4648165 |
tctccttattatttatgtttaatattagtcttgcacttttatttttacgtatgtatgaaaca |
4648226 |
T |
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