View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5255_low_11 (Length: 410)
Name: NF5255_low_11
Description: NF5255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5255_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 9 - 393
Target Start/End: Complemental strand, 52711736 - 52711352
Alignment:
| Q |
9 |
gcacagagtaaacatcaccattagtaccattaccattactccgaacactatttgggtaaccattttttggactcggaggcatataaaaatcagtttggtt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52711736 |
gcacagagtaaacatcaccattagtaccattaccattactccgaacactatttgggtaaccattttttggactcggaggcatataaaaatcagtttggtt |
52711637 |
T |
|
| Q |
109 |
aaaaccagaagctctcggtgttggttcttttgatgtttgaaccgaatatatctcaacaccggtaagatttgaagctcgcggcgtcatattatttaaatga |
208 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
52711636 |
aaaaccagaagctctcggtgttggttctgttgatgtttgaaccgaatatatctcaacacctgtaagatttgaagctcgcagcgtcatattatttaaatga |
52711537 |
T |
|
| Q |
209 |
gatttgttaaatgaaccagataccatagagttagtagttgatcttttaacaacaacatgaagtttaccatcttcacctatctctgcatcagtttgaagtg |
308 |
Q |
| |
|
||||||||||| || |||||| | |||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
52711536 |
gatttgttaaacgatccagatgcaatagagtttgtagttgatcttttaacaacaacgtgaagtttaccatcttcacctgtctctgcatcagtttgaagtg |
52711437 |
T |
|
| Q |
309 |
gttctctaccgttaagcgaaacaacatcagaatcaactttgaatgatgttatagaagctgcagtttctggaaactgttctgaaat |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52711436 |
tttctctaccgttaagcgaaacaacatcagaatcaactttgaatgatgttatagaagctgcagtttctggaaactgttctgaaat |
52711352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 91 - 389
Target Start/End: Complemental strand, 52716962 - 52716664
Alignment:
| Q |
91 |
ataaaaatcagtttggttaaaaccagaagctctcggtgttggttcttttgatgtttgaaccgaatatatctcaacaccggtaagatttgaagctcgcggc |
190 |
Q |
| |
|
||||||||||||||||||||||| |||| |||| |||||||||||| |||||| |||||| |||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
52716962 |
ataaaaatcagtttggttaaaactagaacctcttggtgttggttctcttgatgattgaacagaatatatctcaacaccggttagatttgaagctcgtggc |
52716863 |
T |
|
| Q |
191 |
gtcatattatttaaatgagatttgttaaatgaaccagataccatagagttagtagttgatcttttaacaacaacatgaagtttaccatcttcacctatct |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52716862 |
gtcatattatttaaatgagatttgttaaatgaaccagataccatagagttagtagttgatcttttaacaacaacatgaagtttaccatcttcacctatct |
52716763 |
T |
|
| Q |
291 |
ctgcatcagtttgaagtggttctctaccgttaagcgaaacaacatcagaatcaactttgaatgatgttatagaagctgcagtttctggaaactgttctg |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
52716762 |
ctgcatcagtttgaagtggttctctaccgttaagagaaacaacgtcagaatcaactttgaatgatgttatagaagctgcagtttcaggaaactgttctg |
52716664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 387
Target Start/End: Complemental strand, 33102441 - 33102380
Alignment:
| Q |
326 |
gaaacaacatcagaatcaactttgaatgatgttatagaagctgcagtttctggaaactgttc |
387 |
Q |
| |
|
|||||||||||||||||||| || || || | |||||||| |||||||| ||||||||||| |
|
|
| T |
33102441 |
gaaacaacatcagaatcaaccttaaaggaaataatagaagcagcagtttcaggaaactgttc |
33102380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 263 - 387
Target Start/End: Complemental strand, 34971296 - 34971172
Alignment:
| Q |
263 |
acatgaagtttaccatcttcacctatctctgcatcagtttgaagtggttctctaccgttaagcgaaacaacatcagaatcaactttgaatgatgttatag |
362 |
Q |
| |
|
||||||||||||||||||||||| | || || |||||||||||||| ||| |||| | | |||| ||||||||||||||||||||||||| | |||| |
|
|
| T |
34971296 |
acatgaagtttaccatcttcaccaacttcagcttcagtttgaagtggctctttaccatccaaagaaagaacatcagaatcaactttgaatgatataatag |
34971197 |
T |
|
| Q |
363 |
aagctgcagtttctggaaactgttc |
387 |
Q |
| |
|
|| | ||||| || ||||||||||| |
|
|
| T |
34971196 |
aaccagcagtatcaggaaactgttc |
34971172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University