View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5255_low_12 (Length: 406)
Name: NF5255_low_12
Description: NF5255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5255_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 127 - 393
Target Start/End: Complemental strand, 14789200 - 14788934
Alignment:
| Q |
127 |
tattgatcttttgcaatggaggactgcttcaaaaatttggtcatcatgatcaagatgaaaatttccaataggagatgatttctgtgaacttctgctcaag |
226 |
Q |
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| T |
14789200 |
tattgatcttttgcaatggaggactgcttcaaaaatttggtcatcatgatcaagatgaaaatttccaataggagatgatttctgtgaacttctgctcaag |
14789101 |
T |
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| Q |
227 |
cttttagctaacttatttgtcttgtaaatattattatctctggacatttttcttgatggcctctccattttatgccttaatgtgttcaaagacctgaaaa |
326 |
Q |
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| T |
14789100 |
cttttaactaacctatttgtcttgtaaatattattatctctggacatttttcttgatggcctctccattttatgccttaatgtgttcaaagacctgaaaa |
14789001 |
T |
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| Q |
327 |
attgtaccaaagttctccatgttgattttctcaaccttgtaagaaaaccatgacgaatttccatatt |
393 |
Q |
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| T |
14789000 |
attgtaccaaagttctccatgttgattttctcaaccttgtaagaaaaccatgacgaatttccgtatt |
14788934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 14789316 - 14789278
Alignment:
| Q |
11 |
atgaagaaataatgaattcaactttccaagtaattaagc |
49 |
Q |
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| T |
14789316 |
atgaagaaataatgaattcaacgttccaagtaattaagc |
14789278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 125 - 393
Target Start/End: Original strand, 17543345 - 17543613
Alignment:
| Q |
125 |
cctattgatcttttgcaatggaggactgcttcaaaaatttggtcatcatgatcaagatgaaaatttccaataggagatgatttctgtgaacttctgctca |
224 |
Q |
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| T |
17543345 |
cctattgatcttttgcaatggaggactgcttcaaaaatttggtcatcatgatcaagatgaaaatttccaataggagatgatttctgtgaacctctgctca |
17543444 |
T |
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| Q |
225 |
agcttttagctaacttatttgtcttgtaaatattattatctctggacatttttcttgatggcctctccattttatgccttaatgtgttcaaagacctgaa |
324 |
Q |
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|||||||| ||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17543445 |
agcttttaactaacctatttgtcttgtatatatcattatctctggacatttttcttgatggcctctccattttatgccttaatgtgttcaaagacctgaa |
17543544 |
T |
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| Q |
325 |
aaattgtaccaaagttctccatgttgattttctcaaccttgtaagaaaaccatgacgaatttccatatt |
393 |
Q |
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| T |
17543545 |
aaattgtaccaaagttctccatgttgattttctcaaccttgtaagaaaaccatgacgaatttccatatt |
17543613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 17543226 - 17543258
Alignment:
| Q |
17 |
aaataatgaattcaactttccaagtaattaagc |
49 |
Q |
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| T |
17543226 |
aaataatgaattcaacgttccaagtaattaagc |
17543258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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