View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5255_low_13 (Length: 404)
Name: NF5255_low_13
Description: NF5255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5255_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 12 - 352
Target Start/End: Original strand, 30019456 - 30019795
Alignment:
| Q |
12 |
aagaagtacaatataagtgttgaactagtcttatttctgatgaggttaattattgtctgccaaatatgtgagagtttgtattaaattaaatacttttgtt |
111 |
Q |
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| T |
30019456 |
aagaagtacaatataagtgttgaactagtcttatttctgatgaggttaattattgtctgccaaatatgtgagagtttgtattaaattaaatacttttgtt |
30019555 |
T |
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| Q |
112 |
gcaagatggaaataagatcatttattgtatatatagccctattaatattatagctgttccattgtttcaataatacttcagcttttatcaccaaattacc |
211 |
Q |
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| T |
30019556 |
gcaagatggaa-taagatcatttattgtatatatagccctattaatattatagctgttccattgtttcaataatacttcagcctttatcaccaaattacc |
30019654 |
T |
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| Q |
212 |
atttctctagaatgaaaaaggtatacaagagtctctactttaggacacatgatatttgccaatgcttattagtaatttccagggattttatcgactcatt |
311 |
Q |
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| T |
30019655 |
atttctctagaatgaaaaaggcatacaagagtctctactttaggacacatgatatttgccaatgcttattagtaatttccagggattttatcgactcatt |
30019754 |
T |
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| Q |
312 |
ctcaaatagaaatgtgttcgttgggttaccgttatatgatt |
352 |
Q |
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| T |
30019755 |
ctcaaatagaaatgtgttcgttgggttacatttatatgatt |
30019795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 355 - 391
Target Start/End: Original strand, 30019858 - 30019894
Alignment:
| Q |
355 |
caaagttttagaaaccacaaagaacatgatgagattg |
391 |
Q |
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| T |
30019858 |
caaagttttagaaatcacaaagaacatgatgagattg |
30019894 |
T |
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