View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5255_low_16 (Length: 385)
Name: NF5255_low_16
Description: NF5255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5255_low_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 928798 - 929157
Alignment:
| Q |
1 |
tctgtcggtgtgtgtctaacatgtttgacttgaattgactatgtgtttattgggatccaaatcaatgttnnnnnnntagggtcaaatagtgaaacattat |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
928798 |
tctgtcggtgtgtgtctaccatgtttgacttgacttgactatgtgtttaatgggatccaaatcaatgttaaaaaaatagggttaaatagtgaaacattat |
928897 |
T |
|
| Q |
101 |
catatcatatgattttgattccaatacaatataattgatttggtcagttaaataaatgaattgaattagtttaaccaagtaacatcccaaatgaacaatg |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
928898 |
catat-----gattttgattccaatacaatataattgatttggtcagttaaataaatgaattgaattagtttaaccaagtaacatcccaaatgaacaatg |
928992 |
T |
|
| Q |
201 |
cacttaaaattacattcaaatatataccc--gtctctaaatttttgagtcaatccttaattagttgatgaactggaatggaacatccacaaattcaacaa |
298 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
928993 |
cacttaaaa---cattcaaatatatacccctgtctctaaatttttgagtcaatccttaattagttgatgaactggaatggaacatccacaaattcaacaa |
929089 |
T |
|
| Q |
299 |
caatagaaatgaaattacaaattgagtacaacttcttcttaaattctaccataacctcctgactagca |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
929090 |
caatagaaatgaaattacaaattgagtacaacttcttcttaaattctaccataacctcctgactagca |
929157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 356
Target Start/End: Complemental strand, 1215280 - 1215212
Alignment:
| Q |
288 |
aaattcaacaacaatagaaatgaaattacaaattgagtacaacttcttcttaaattctaccataacctc |
356 |
Q |
| |
|
||||||||||||| || | |||||||| || |||| ||||||||| |||||||||| |||||||||| |
|
|
| T |
1215280 |
aaattcaacaacatgaggattgaaattatgaaatgaggacaacttctccttaaattcttccataacctc |
1215212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University