View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5255_low_17 (Length: 383)
Name: NF5255_low_17
Description: NF5255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5255_low_17 |
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| [»] scaffold0536 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 33 - 363
Target Start/End: Original strand, 48911227 - 48911558
Alignment:
| Q |
33 |
gggcaaccagagttaggatc-tctccattgttggacattaaaagcaatagcagaaacaattaattagtacaatacctctctcatcatcacgttcattcta |
131 |
Q |
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| T |
48911227 |
gggcaaccagagttaggatcctctccattgttggacattaaaagcaatagcagaaacagttaattgctacaatacctctctcatcatcacgttcattcta |
48911326 |
T |
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| Q |
132 |
attcatatatagtatccaaacacacagaagacaaggcaaagatgatgaatacggaagaaggagaagagaaaccacttaatatatacttcataccttactt |
231 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||| |
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| T |
48911327 |
attcattcatagtatccaaacacacagaagacaaggcaaagatgatgaatacggaagaaggagaagagaaagcacttaccatctacttcataccttactt |
48911426 |
T |
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| Q |
232 |
agcacctggccacatgatccctctatgcgacatagcaactctctttgccttacgccgtcaaaatgtcaccatcataaccacaccctccaatgctcaaatc |
331 |
Q |
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| T |
48911427 |
agcacctggccacatgatccctctatgcgacatagcaactctctttgccttacgccgtcaaaatgtcaccatcataaccacaccctccaatgctcaaatc |
48911526 |
T |
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| Q |
332 |
cttggcaaatctattcctttaaaccaacacct |
363 |
Q |
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| T |
48911527 |
cttggcaaatctattcctttaaaccaacacct |
48911558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 233 - 331
Target Start/End: Complemental strand, 48975193 - 48975095
Alignment:
| Q |
233 |
gcacctggccacatgatccctctatgcgacatagcaactctctttgccttacgccgtcaaaatgtcaccatcataaccacaccctccaatgctcaaatc |
331 |
Q |
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| T |
48975193 |
gcacctggccacatgacccctctatgcgacattgctacactctttgcctcatgcggtcaccatgttaccatcattaccactccctctaatgcccaaatc |
48975095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 344
Target Start/End: Complemental strand, 48952342 - 48952213
Alignment:
| Q |
215 |
tacttcataccttacttagcacctggccacatgatccctctatgcgacatagcaactctctttgccttacgccgtcaaaatgtcaccatcataaccacac |
314 |
Q |
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| T |
48952342 |
tacttcattccatacttagcagcagggcacatgatccctttatgtgacatagcttctctctttgcttcacgtggtcactttgttacaatcataaccactc |
48952243 |
T |
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| Q |
315 |
cctccaatgctcaaatccttggcaaatcta |
344 |
Q |
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| T |
48952242 |
attcaaatgctaaaatccttcccaaatcta |
48952213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 175 - 363
Target Start/End: Original strand, 5536 - 5724
Alignment:
| Q |
175 |
gatgaatacggaagaaggagaagagaaaccacttaatatatacttcataccttacttagcacctggccacatgatccctctatgcgacatagcaactctc |
274 |
Q |
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|||| ||| ||||||||||||||||||| |||||| ||| |||||||||||||||||||| ||||| || ||||||||| |||| ||||||||||| ||| |
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| T |
5536 |
gatggatatggaagaaggagaagagaaagcacttactatctacttcataccttacttagctcctggtcatatgatccctttatgtgacatagcaacactc |
5635 |
T |
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| Q |
275 |
tttgccttacgccgtcaaaatgtcaccatcataaccacaccctccaatgctcaaatccttggcaaatctattcctttaaaccaacacct |
363 |
Q |
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| T |
5636 |
tttgccttacgccgtcaaaaagttaccatcataaccacaccctccaatgctcaaatccttggcaaatccatccctttaaaccaacacct |
5724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 192 - 360
Target Start/End: Original strand, 9553 - 9705
Alignment:
| Q |
192 |
gagaagagaaaccacttaatatatacttcataccttacttagcacctggccacatgatccctctatgcgacatagcaactctctttgccttacgccgtca |
291 |
Q |
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| T |
9553 |
gagaagagaaagcacttaaaatctacttcataccttacttatcacctggtcatatgatccctctatgcgacata----------------tacgctgtca |
9636 |
T |
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| Q |
292 |
aaatgtcaccatcataaccacaccctccaatgctcaaatccttggcaaatctattcctttaaaccaaca |
360 |
Q |
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| T |
9637 |
aaatgttaccatcataaccacaccttccaacgctcaaatccttggcaaatctatccctttaaaccaaca |
9705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 121
Target Start/End: Complemental strand, 31742786 - 31742730
Alignment:
| Q |
65 |
gacattaaaagcaatagcagaaacaattaattagtacaatacctctctcatcatcac |
121 |
Q |
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| T |
31742786 |
gacactaaaagcaatagcggaaataattaattgctacaataactctctcatcatcac |
31742730 |
T |
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