View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5255_low_18 (Length: 378)

Name: NF5255_low_18
Description: NF5255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5255_low_18
NF5255_low_18
[»] chr5 (16 HSPs)
chr5 (3-372)||(30060620-30060989)
chr5 (3-372)||(30749894-30750263)
chr5 (3-369)||(30400325-30400691)
chr5 (3-369)||(29853562-29853928)
chr5 (3-369)||(29872425-29872791)
chr5 (3-325)||(30436067-30436389)
chr5 (3-325)||(30712958-30713280)
chr5 (39-363)||(30483688-30484012)
chr5 (39-325)||(30338058-30338344)
chr5 (39-366)||(30241873-30242194)
chr5 (3-366)||(30206773-30207136)
chr5 (191-325)||(30676821-30676955)
chr5 (62-322)||(30475685-30475945)
chr5 (27-234)||(17983182-17983389)
chr5 (80-321)||(30521162-30521403)
chr5 (80-321)||(30561502-30561743)
[»] chr7 (1 HSPs)
chr7 (39-363)||(26707619-26707943)
[»] chr4 (3 HSPs)
chr4 (3-363)||(20296077-20296437)
chr4 (28-325)||(52352235-52352532)
chr4 (31-324)||(13616876-13617168)
[»] chr1 (2 HSPs)
chr1 (27-366)||(7581211-7581550)
chr1 (27-366)||(7099696-7100035)
[»] chr3 (2 HSPs)
chr3 (3-159)||(25293623-25293779)
chr3 (314-366)||(25293433-25293485)


Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 3 - 372
Target Start/End: Original strand, 30060620 - 30060989
Alignment:
Q  3 acatcttcaacctccgtattacccctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaata 102  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30060620 acatcttcaacctccgtagtacccctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaata 30060719  T
Q  103 tagcacaaaaagagaaacattgttttagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatgaaattttcatctgataaatcccaaag 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  30060720 tagcacaaaaagagaaacattgttttagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatggaattttcatctgataaatcccaaag 30060819  T
Q  203 ttcactgtctttaattttaagccattccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattacatttcttt 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  30060820 ttcactgtctttaattttaagccattccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattgcatttcttt 30060919  T
Q  303 actatttcctttcctattgccacgagattagcacgctcttctttgtaatgtccaaatgcatattcttcga 372  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||    
T  30060920 actatctcctttcctattgccacgagatcagcacgctcttctttgtgatgtccaaatgcatattgttcga 30060989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 3 - 372
Target Start/End: Original strand, 30749894 - 30750263
Alignment:
Q  3 acatcttcaacctccgtattacccctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaata 102  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  30749894 acatcttcaacctccatattacccctagatgaaatcaatccattagccatccaaagccaaatcaatttttcctttaggatttctgcatctttgggaaata 30749993  T
Q  103 tagcacaaaaagagaaacattgttttagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatgaaattttcatctgataaatcccaaag 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  30749994 tagcacaaaaagagaaacattgttttagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatggaattttcatctgataaatcccaaag 30750093  T
Q  203 ttcactgtctttaattttaagccattccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattacatttcttt 302  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  30750094 ttcactatctttaattttaagccattccttttcatctttccttgagttcattaaacttcccaatgcttttgctgcaagaggcaatccattacatttcttt 30750193  T
Q  303 actatttcctttcctattgccacgagattagcacgctcttctttgtaatgtccaaatgcatattcttcga 372  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  30750194 actatctcctttcctattgccacgagatcagcacgctcttctttgtaatgtccaaatgcatattgttcga 30750263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 3 - 369
Target Start/End: Original strand, 30400325 - 30400691
Alignment:
Q  3 acatcttcaacctccgtattacccctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaata 102  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||| || | ||||||   ||| ||||||||||    
T  30400325 acatcttcaacctccgtattaccccaagatgaaatcaatccattagccatccaaagctgaatcaattcttctttcaagatttccctatccttgggaaata 30400424  T
Q  103 tagcacaaaaagagaaacattgttttagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatgaaattttcatctgataaatcccaaag 202  Q
    |||||||||||||||||||||| |||||||  |  | |||||||||||||||||||||||||| | |||||||  ||||||| |||| |||| |||||||    
T  30400425 tagcacaaaaagagaaacattgctttagggtcggtgttaaataaaagtaactcaacctcaaagaacgcaaaatataattttcttctggtaaagcccaaag 30400524  T
Q  203 ttcactgtctttaattttaagccattccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattacatttcttt 302  Q
     ||| |||||||||| | |||||||||||||||  | ||||||||| |||| |||| |||||||| ||||||||||||||||||||||||||||||||||    
T  30400525 ctcagtgtctttaatatcaagccattccttttctccattccttgagctcatcaaacctcccaatgcttttgctgcaagaggcaatccattacatttcttt 30400624  T
Q  303 actatttcctttcctattgccacgagattagcacgctcttctttgtaatgtccaaatgcatattctt 369  Q
    ||||| |||||||||||||| || || |  |||||||||||| | |||||||| |||||||||||||    
T  30400625 actatctcctttcctattgctacaagttctgcacgctcttctctataatgtcccaatgcatattctt 30400691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 3 - 369
Target Start/End: Original strand, 29853562 - 29853928
Alignment:
Q  3 acatcttcaacctccgtattacccctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaata 102  Q
    ||||||||||| |||  ||||||| |||||||||| ||||||||||||||||||||   |||||||||||| || ||||||||| |||| ||||||||||    
T  29853562 acatcttcaacgtccaaattacccttagatgaaataaatccattagccatccaaagttgaatcaattcttctttcaggatttctccatccttgggaaata 29853661  T
Q  103 tagcacaaaaagagaaacattgttttagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatgaaattttcatctgataaatcccaaag 202  Q
    |||| ||||| ||||||||||||||||||| ||  | |||||||||||||||||||||||||||| |||||||  ||||||| | || |||| |||||||    
T  29853662 tagcgcaaaaggagaaacattgttttagggttggtgttaaataaaagtaactcaacctcaaagcaagcaaaatagaattttcttgtggtaaagcccaaag 29853761  T
Q  203 ttcactgtctttaattttaagccattccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattacatttcttt 302  Q
     |||||||||||||| | ||||||||||||||| || ||||||||| |||| |||| |||||||| ||||||||||||||||||||||||||||||||||    
T  29853762 ctcactgtctttaatatcaagccattccttttcttcattccttgagctcatcaaacctcccaatgtttttgctgcaagaggcaatccattacatttcttt 29853861  T
Q  303 actatttcctttcctattgccacgagattagcacgctcttctttgtaatgtccaaatgcatattctt 369  Q
    || || |||||||||||| |||| || || | | |||||||| || ||| |||||||||||||||||    
T  29853862 acaatctcctttcctatttccacaagctttgtatgctcttctctgaaatatccaaatgcatattctt 29853928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 3 - 369
Target Start/End: Original strand, 29872425 - 29872791
Alignment:
Q  3 acatcttcaacctccgtattacccctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaata 102  Q
    ||||||||||| |||  ||||||| |||||||||| ||| ||||||||||||||||   |||||||||||| || ||||||| |  ||| ||||||||||    
T  29872425 acatcttcaacgtccaaattacccatagatgaaataaattcattagccatccaaagttgaatcaattcttctttcaggatttttctatccttgggaaata 29872524  T
Q  103 tagcacaaaaagagaaacattgttttagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatgaaattttcatctgataaatcccaaag 202  Q
    |||| ||||||||||||||||| ||||||| ||  | |||||||||||||||||||||||||||| |||||||  ||||||| |  |||||| |||||||    
T  29872525 tagcgcaaaaagagaaacattgctttagggttggtgttaaataaaagtaactcaacctcaaagcaagcaaaatagaattttcttgcgataaagcccaaag 29872624  T
Q  203 ttcactgtctttaattttaagccattccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattacatttcttt 302  Q
     |||||||| ||||| | ||||||||||||||| || ||||||||| |||| |||| |||||||| ||||||||||||||||||||||||||||||||||    
T  29872625 ctcactgtccttaatatcaagccattccttttcttcattccttgagctcatcaaacctcccaatgcttttgctgcaagaggcaatccattacatttcttt 29872724  T
Q  303 actatttcctttcctattgccacgagattagcacgctcttctttgtaatgtccaaatgcatattctt 369  Q
    || || |||||||||||| |||  || || | | |||||||| |||||| |||||||||||||||||    
T  29872725 acaatctcctttcctatttccataagctttgtatgctcttctctgtaatatccaaatgcatattctt 29872791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 3 - 325
Target Start/End: Original strand, 30436067 - 30436389
Alignment:
Q  3 acatcttcaacctccgtattacccctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaata 102  Q
    ||||||||||| |||  ||||||| |||||||||| ||| |||||||||||||||| | |||||||||||| ||||||||||||  ||| ||||||||||    
T  30436067 acatcttcaacgtccaaattacccatagatgaaataaattcattagccatccaaagtcgaatcaattcttcttttaggatttctctatccttgggaaata 30436166  T
Q  103 tagcacaaaaagagaaacattgttttagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatgaaattttcatctgataaatcccaaag 202  Q
    |||||||||||||||||||||| ||||||| ||  | |||||||||||||||||| |||||||| ||||||||  ||||||| | || |||| |||||||    
T  30436167 tagcacaaaaagagaaacattgctttagggttggtgttaaataaaagtaactcaatctcaaagcgggcaaaatagaattttcttgtggtaaagcccaaag 30436266  T
Q  203 ttcactgtctttaattttaagccattccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattacatttcttt 302  Q
     |||||||||||||| | ||||||||||||||| || ||||||||| |||| ||||  ||||||| ||||||||||||||||||||||||||||||||||    
T  30436267 ctcactgtctttaatatcaagccattccttttcttcattccttgagctcatcaaaccccccaatgcttttgctgcaagaggcaatccattacatttcttt 30436366  T
Q  303 actatttcctttcctattgccac 325  Q
    ||||| |||||||| ||| ||||    
T  30436367 actatctcctttccaatttccac 30436389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 3 - 325
Target Start/End: Complemental strand, 30713280 - 30712958
Alignment:
Q  3 acatcttcaacctccgtattacccctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaata 102  Q
    ||||||||||| |||  ||||||| |||||||||| |||||||||||||||||||| | |||||||||||| ||||||||||||  ||| ||||||||||    
T  30713280 acatcttcaacgtccaaattacccatagatgaaataaatccattagccatccaaagtcgaatcaattcttcttttaggatttctctatccttgggaaata 30713181  T
Q  103 tagcacaaaaagagaaacattgttttagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatgaaattttcatctgataaatcccaaag 202  Q
    |||||||||||||||||||||| ||||||| ||  | ||||||||||||||||| ||||||||||||||||||  ||||||| | || |||| |||||||    
T  30713180 tagcacaaaaagagaaacattgctttagggttggtgataaataaaagtaactcagcctcaaagcaggcaaaatagaattttcttgtggtaaagcccaaag 30713081  T
Q  203 ttcactgtctttaattttaagccattccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattacatttcttt 302  Q
     |||||||||||||| | ||||||||| ||||| || ||||||||| |||| ||||  ||||||| |||||||||||| |||||||||||||||||||||    
T  30713080 ctcactgtctttaatatcaagccattcattttcttcattccttgagctcatcaaaccccccaatgcttttgctgcaagtggcaatccattacatttcttt 30712981  T
Q  303 actatttcctttcctattgccac 325  Q
     |||| |||||||||||| ||||    
T  30712980 gctatctcctttcctatttccac 30712958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 39 - 363
Target Start/End: Original strand, 30483688 - 30484012
Alignment:
Q  39 aatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaatatagcacaaaaagagaaacattgttttagggctgccg 138  Q
    |||||||||||||||||||||  ||||||||||||||| |||||||||  |||||||||||||||||||||||| ||||||||||| ||||||| ||  |    
T  30483688 aatccattagccatccaaagctgaatcaattcttccttcaggatttctctatctttgggaaatatagcacaaaaggagaaacattgctttagggttggtg 30483787  T
Q  139 gtaaataaaagtaactcaacctcaaagcaggcaaaatgaaattttcatctgataaatcccaaagttcactgtctttaattttaagccattccttttcatc 238  Q
     |||||||||||||||||||||||||||||| |||||  | ||||||| || |||||||||||| |||||||||||||| | ||||||||||||||| ||    
T  30483788 ttaaataaaagtaactcaacctcaaagcaggtaaaatagatttttcatgtggtaaatcccaaagctcactgtctttaatatcaagccattccttttcttc 30483887  T
Q  239 tttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattacatttctttactatttcctttcctattgccacgagattagcacgc 338  Q
     ||| |||||  ||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||  |||| || || | | ||    
T  30483888 attcattgagaccattaaaccccccaatgcttttgctgcaagaggcaatccattacatttctttactatctcctttccaatctccacaagctttgtatgc 30483987  T
Q  339 tcttctttgtaatgtccaaatgcat 363  Q
    |||||||||| | ||| ||||||||    
T  30483988 tcttctttgttacgtctaaatgcat 30484012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 39 - 325
Target Start/End: Complemental strand, 30338344 - 30338058
Alignment:
Q  39 aatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaatatagcacaaaaagagaaacattgttttagggctgccg 138  Q
    ||||||||||||||||||||   ||||||||||||||| |||||||||  |||||||||||||||||||||||| ||||||||||| ||||||| ||  |    
T  30338344 aatccattagccatccaaagttgaatcaattcttccttcaggatttctctatctttgggaaatatagcacaaaaggagaaacattgctttagggttggtg 30338245  T
Q  139 gtaaataaaagtaactcaacctcaaagcaggcaaaatgaaattttcatctgataaatcccaaagttcactgtctttaattttaagccattccttttcatc 238  Q
     |||||||||||||||||| ||||||||||| |||||  | ||||||| || |||||||||||| |||||||||||||| | ||||||||||||||| ||    
T  30338244 ttaaataaaagtaactcaaactcaaagcaggtaaaatagatttttcatgtggtaaatcccaaagctcactgtctttaatatcaagccattccttttcttc 30338145  T
Q  239 tttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattacatttctttactatttcctttcctattgccac 325  Q
     ||| |||||  ||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||    
T  30338144 attcattgagaccattaaaccccccaatgcttttgctgcaagaggcaatccattacatttctttactatctcctttccaatttccac 30338058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 39 - 366
Target Start/End: Complemental strand, 30242194 - 30241873
Alignment:
Q  39 aatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaatatagcacaaaaagagaaacattgttttagggctgccg 138  Q
    |||||||||||||| || |||  ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||  |    
T  30242194 aatccattagccattcagagctgaatcaattcttccttcaggatttctccatctttgggaaatatagcacaaaaagagaaacattgttttagagttggtg 30242095  T
Q  139 gtaaataaaagtaactcaacctcaaagcaggcaaaatgaaattttcatctgataaatcccaaagttcactgtctttaattttaagccattccttttcatc 238  Q
     |||||||||||||||||||||||||||||||||||      |||| | ||  ||  ||||||| || || |||||||||| ||||||||||| ||| ||    
T  30242094 ttaaataaaagtaactcaacctcaaagcaggcaaaa------tttcttgtggcaaggcccaaagctcgctatctttaatttcaagccattcctcttcttc 30242001  T
Q  239 tttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattacatttctttactatttcctttcctattgccacgagattagcacgc 338  Q
     ||||||||| ||||||||| |||||||| ||| |||||||||||||||||||||||||||||||| || ||||||||||||  ||| || || | || |    
T  30242000 attccttgagctcattaaacctcccaatgctttcgctgcaagaggcaatccattacatttctttacaatctcctttcctattttcacaagctttgtactc 30241901  T
Q  339 tcttctttgtaatgtccaaatgcatatt 366  Q
    |||||| | |||||||||||||||||||    
T  30241900 tcttctctataatgtccaaatgcatatt 30241873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 3 - 366
Target Start/End: Original strand, 30206773 - 30207136
Alignment:
Q  3 acatcttcaacctccgtattacccctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaata 102  Q
    ||||||||||||||| ||||  |||||||| |||| ||| ||||||||||||||||   ||||||||||||| | | || ||||| |||||||||||| |    
T  30206773 acatcttcaacctccatattttccctagataaaataaattcattagccatccaaagatgaatcaattcttccctcacgaattctgtatctttgggaaaca 30206872  T
Q  103 tagcacaaaaagagaaacattgttttagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatgaaattttcatctgataaatcccaaag 202  Q
    |||||||||||| ||||||  | |||| || ||  | ||||| |||||| ||||||||||||||||| |||||  |||| |||| || |||| |||||||    
T  30206873 tagcacaaaaagcgaaacaccgctttaaggttggagttaaatgaaagtagctcaacctcaaagcaggtaaaatataattctcatgtggtaaagcccaaag 30206972  T
Q  203 ttcactgtctttaattttaagccattccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattacatttcttt 302  Q
    |||||| |||||||||| ||||||||| ||||| || ||||||||  |||||| || |||||||| || |||||||||||||||||||| ||||||||||    
T  30206973 ttcactctctttaatttcaagccattctttttcttcattccttgaactcattagacctcccaatgcttgtgctgcaagaggcaatccatcacatttcttt 30207072  T
Q  303 actatttcctttcctattgccacgagattagcacgctcttctttgtaatgtccaaatgcatatt 366  Q
    ||||| |||||||||||| |||| || |  |||||||||||| | |  ||||||||||||||||    
T  30207073 actatctcctttcctatttccacaagctctgcacgctcttctctattttgtccaaatgcatatt 30207136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 191 - 325
Target Start/End: Complemental strand, 30676955 - 30676821
Alignment:
Q  191 taaatcccaaagttcactgtctttaattttaagccattccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatcca 290  Q
    |||| ||||||| |||||||||||||| | |||||||||||| || || ||||||||| |||| ||||  ||||||| ||||||||||||||||||||||    
T  30676955 taaagcccaaagctcactgtctttaatatcaagccattccttctcttcattccttgagctcatcaaaccccccaatgcttttgctgcaagaggcaatcca 30676856  T
Q  291 ttacatttctttactatttcctttcctattgccac 325  Q
    ||||||||||||||||| |||||||| ||| ||||    
T  30676855 ttacatttctttactatctcctttccaatttccac 30676821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 62 - 322
Target Start/End: Original strand, 30475685 - 30475945
Alignment:
Q  62 aatcaattcttcctttaggatttctgcatctttgggaaatatagcacaaaaagagaaacattgttttagggctgccggtaaataaaagtaactcaacctc 161  Q
    |||||| ||||||||||  |||||   ||||||||||||||| ||||||||||  |||||  | |||| ||  |  | ||||| |||||| || ||||||    
T  30475685 aatcaaatcttcctttacaatttccatatctttgggaaatatcgcacaaaaagcaaaacaccgctttaaggtcggtgttaaatgaaagtagcttaacctc 30475784  T
Q  162 aaagcaggcaaaatgaaattttcatctgataaatcccaaagttcactgtctttaattttaagccattccttttcatctttccttgagttcattaaacttc 261  Q
    || || ||||||||| |||| |||| || |||   ||| || | |||||||||||||| ||||||||| ||||||||  ||||||||  ||||| || ||    
T  30475785 aaggctggcaaaatggaattctcatatggtaaggtccagagattactgtctttaatttcaagccattcattttcatcactccttgagcgcattagacctc 30475884  T
Q  262 ccaatgattttgctgcaagaggcaatccattacatttctttactatttcctttcctattgc 322  Q
    |||||| || ||||||||||||||||||   ||| |||||||||||  |||| ||||||||    
T  30475885 ccaatgcttgtgctgcaagaggcaatcctccacacttctttactatcgccttacctattgc 30475945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 27 - 234
Target Start/End: Original strand, 17983182 - 17983389
Alignment:
Q  27 ctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaatatagcacaaaaagagaaacattgtt 126  Q
    |||||||| || |||  |||||||||||||||   ||| | |||||| || | ||||||||| ||||||||||||||||||||||||| |||||||||||    
T  17983182 ctagatgagataaatttattagccatccaaagatgaattagttcttctttcatgatttctgcttctttgggaaatatagcacaaaaagcgaaacattgtt 17983281  T
Q  127 ttagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatgaaattttcatctgataaatcccaaagttcactgtctttaattttaagcca 226  Q
    ||| || ||  | ||||| |||||| |||||||| | ||| || |||||  |||| ||||  | |||| |||| || || || |||||||||| || |||    
T  17983282 ttaaggttggtgataaatgaaagtagctcaaccttagagctgggaaaatagaattctcatgcggtaaagcccagagctcgctctctttaatttcaaacca 17983381  T
Q  227 ttcctttt 234  Q
    ||||||||    
T  17983382 ttcctttt 17983389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 80 - 321
Target Start/End: Complemental strand, 30521403 - 30521162
Alignment:
Q  80 gatttctgcatctttgggaaatatagcacaaaaagagaaacattgttttagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatgaaa 179  Q
    |||||||  |||||||||||| || |||||||||| |||||||||||||| || ||    ||||| |||||| |||||||| ||||||||||||||  ||    
T  30521403 gatttctatatctttgggaaacatggcacaaaaagtgaaacattgttttaaggttgggtttaaatgaaagtagctcaaccttaaagcaggcaaaatagaa 30521304  T
Q  180 ttttcatctgataaatcccaaagttcactgtctttaattttaagccattccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaa 279  Q
    || ||||  | ||||  |||||     || |||||||||| ||||||||| |||||  |  ||||||||  |||||  | |||||||| || ||||||||    
T  30521303 ttctcattcggtaaagaccaaatcctgctatctttaatttcaagccattctttttctccactccttgagcacattaggcctcccaatgcttgtgctgcaa 30521204  T
Q  280 gaggcaatccattacatttctttactatttcctttcctattg 321  Q
    ||||||||||   ||| ||||||||||| || ||||||||||    
T  30521203 gaggcaatcccccacacttctttactatctcttttcctattg 30521162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 80 - 321
Target Start/End: Complemental strand, 30561743 - 30561502
Alignment:
Q  80 gatttctgcatctttgggaaatatagcacaaaaagagaaacattgttttagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatgaaa 179  Q
    |||||||  |||||||||||| || |||||||||| |||||||||||||| || ||    ||||| |||||| |||||||| ||||||||||||||  ||    
T  30561743 gatttctatatctttgggaaacatggcacaaaaagtgaaacattgttttaaggttgggtttaaatgaaagtagctcaaccttaaagcaggcaaaatagaa 30561644  T
Q  180 ttttcatctgataaatcccaaagttcactgtctttaattttaagccattccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaa 279  Q
    || ||||  | ||||  |||||     || |||||||||| ||||||||| |||||  |  ||||||||  |||||  | |||||||| || ||||||||    
T  30561643 ttctcattcggtaaagaccaaatcctgctatctttaatttcaagccattctttttctccactccttgagcacattaggcctcccaatgcttgtgctgcaa 30561544  T
Q  280 gaggcaatccattacatttctttactatttcctttcctattg 321  Q
    ||||||||||   ||| ||||||||||| || ||||||||||    
T  30561543 gaggcaatcccccacacttctttactatctcttttcctattg 30561502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 39 - 363
Target Start/End: Original strand, 26707619 - 26707943
Alignment:
Q  39 aatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaatatagcacaaaaagagaaacattgttttagggctgccg 138  Q
    ||||||||||||||||||||   ||||||||||||||| | |||||||  |||||||||||||||||||||||||||||||||||| ||||||| ||  |    
T  26707619 aatccattagccatccaaagttgaatcaattcttccttcaagatttctctatctttgggaaatatagcacaaaaagagaaacattgctttagggttggtg 26707718  T
Q  139 gtaaataaaagtaactcaacctcaaagcaggcaaaatgaaattttcatctgataaatcccaaagttcactgtctttaattttaagccattccttttcatc 238  Q
     ||||||||||||||||||||||||||||||||||||  | ||||| | || |||||||||||| |||||||||||||| | ||||||||||||||| ||    
T  26707719 ttaaataaaagtaactcaacctcaaagcaggcaaaatagatttttcttgtggtaaatcccaaagctcactgtctttaatatcaagccattccttttcttc 26707818  T
Q  239 tttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattacatttctttactatttcctttcctattgccacgagattagcacgc 338  Q
     ||| |||||  |||||||| |||||||| ||||||||||||||| |||||||||||||| |||||||| |||||||||||| |||| || || | | ||    
T  26707819 attcattgagaacattaaacctcccaatgcttttgctgcaagaggtaatccattacatttttttactatctcctttcctatttccacaagctttgtatgc 26707918  T
Q  339 tcttctttgtaatgtccaaatgcat 363  Q
    |||||| ||||||||| ||||||||    
T  26707919 tcttctctgtaatgtctaaatgcat 26707943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 165; Significance: 4e-88; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 3 - 363
Target Start/End: Complemental strand, 20296437 - 20296077
Alignment:
Q  3 acatcttcaacctccgtattacccctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaata 102  Q
    ||||||||||| |||  ||||||| |||||||||| |||||||||||||||||||||  |||||||||||| || | |||||||  ||| || |||||||    
T  20296437 acatcttcaacgtccaaattacccatagatgaaattaatccattagccatccaaagctgaatcaattcttctttcaagatttctctatccttaggaaata 20296338  T
Q  103 tagcacaaaaagagaaacattgttttagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatgaaattttcatctgataaatcccaaag 202  Q
    |||||||||||||||||||||| ||||| | ||  | ||||||||||||||||| ||||||||||||||||||  | ||||| | || |||| |||||||    
T  20296337 tagcacaaaaagagaaacattgctttagagttggtgttaaataaaagtaactcagcctcaaagcaggcaaaatagatttttcttgtggtaaagcccaaag 20296238  T
Q  203 ttcactgtctttaattttaagccattccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattacatttcttt 302  Q
     ||| |||||||||| | | ||||||||||||| || ||| |||||  |||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  20296237 gtcattgtctttaatatcacgccattccttttcttcattcattgagaccattaaacctcccaatgcttttgctgcaagaggcaatccattacatttcttt 20296138  T
Q  303 actatttcctttcctattgccacgagattagcacgctcttctttgtaatgtccaaatgcat 363  Q
    ||||| |||||||||||| |||| || || | | |||||||| ||||||||| ||||||||    
T  20296137 actatctcctttcctatttccacaagctttgtatgctcttctctgtaatgtctaaatgcat 20296077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 28 - 325
Target Start/End: Original strand, 52352235 - 52352532
Alignment:
Q  28 tagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaatatagcacaaaaagagaaacattgttt 127  Q
    |||| ||||| |||||||| |||||||| ||   |||||| || || ||||||||||| | ||||||||||||||| ||||| |||||||||||||||||    
T  52352235 tagacgaaataaatccattggccatccagagatgaatcaaatcgtcttttaggatttccgtatctttgggaaatatggcacagaaagagaaacattgttt 52352334  T
Q  128 tagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatgaaattttcatctgataaatcccaaagttcactgtctttaattttaagccat 227  Q
    || || || || |||||  || |||||||||||||| |||||||||||  |||| ||||||||||||  |||||| |  || |||||||||| || ||||    
T  52352335 taaggttgacgttaaatggaaataactcaacctcaaggcaggcaaaatagaattctcatctgataaagaccaaagcttgctctctttaatttcaacccat 52352434  T
Q  228 tccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattacatttctttactatttcctttcctattgccac 325  Q
    ||||||||  | || ||||||  ||||| || ||| |||| || ||| ||||||||||||||   ||| |||||||||||  | || |||||||||||    
T  52352435 tccttttctccatttcttgagcgcattagacctcctaatgcttgtgcagcaagaggcaatcccccacacttctttactatcgctttgcctattgccac 52352532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 31 - 324
Target Start/End: Original strand, 13616876 - 13617168
Alignment:
Q  31 atgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaatatagcacaaaaagagaaacattgttttag 130  Q
    ||||||| ||| ||||||||||||||||   ||||||||||||||||  ||||| || |||||| ||||||| | |||| |||| ||| |||||||| |     
T  13616876 atgaaataaattcattagccatccaaagatgaatcaattcttcctttgtgatttttgtatctttaggaaatacaacacagaaagcgaatcattgtttaaa 13616975  T
Q  131 ggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatgaaattttcatctgataaatcccaaagttcactgtctttaattttaagccattcc 230  Q
    || || || |||||  |||||||||| ||||||| |||| |||||  |||| ||||    |||||||||||| || || ||| |||||| |  |||||||    
T  13616976 ggttggcgataaat-gaagtaactcagcctcaaatcaggaaaaatagaattctcataccgtaaatcccaaagctcgctctctctaatttcacaccattcc 13617074  T
Q  231 ttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattacatttctttactatttcctttcctattgcca 324  Q
    |||||  |  |||| ||||  |||| |   ||||||| || | ||||||||||||||||   ||| || || ||||| ||||||||||||||||    
T  13617075 ttttctccactcctcgagtgtattagagaccccaatgcttgtcctgcaagaggcaatcctccacactttttaactatctcctttcctattgcca 13617168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 116; Significance: 6e-59; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 27 - 366
Target Start/End: Complemental strand, 7581550 - 7581211
Alignment:
Q  27 ctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaatatagcacaaaaagagaaacattgtt 126  Q
    ||||||||||| ||| ||||||||||||||||   ||||||||||||||| | ||||| || |||||| ||||||||||||||||||| |||||||||||    
T  7581550 ctagatgaaataaattcattagccatccaaagatgaatcaattcttccttcatgatttttgtatctttaggaaatatagcacaaaaagcgaaacattgtt 7581451  T
Q  127 ttagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatgaaattttcatctgataaatcccaaagttcactgtctttaattttaagcca 226  Q
    ||| || ||  | ||||| |||||| ||||| |||| ||| |||||| |  |||| ||||  | |||||||||||| || || |||||||||| || |||    
T  7581450 ttaaggttggtgataaatgaaagtagctcaatctcagagctggcaaagtagaattctcatgcggtaaatcccaaagctcgctctctttaatttcaaacca 7581351  T
Q  227 ttccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattacatttctttactatttcctttcctattgccacg 326  Q
    ||||||||| ||  ||||||||| ||||| ||  ||||||| || ||||||||||||||||||   |||||| |||||||| ||||| |||||||||||     
T  7581350 ttccttttcttcactccttgagtgcattagacaccccaatgcttgtgctgcaagaggcaatcccgcacatttttttactatctccttgcctattgccaca 7581251  T
Q  327 agattagcacgctcttctttgtaatgtccaaatgcatatt 366  Q
    || |  |||| ||||||| | | |||||||||||||||||    
T  7581250 agctctgcactctcttctctatcatgtccaaatgcatatt 7581211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 27 - 366
Target Start/End: Original strand, 7099696 - 7100035
Alignment:
Q  27 ctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaatatagcacaaaaagagaaacattgtt 126  Q
    ||||||||||| ||||||||||||||||||||   ||||||||||||||| | ||||| || ||||||| |||||||||||||||||| |||||||||||    
T  7099696 ctagatgaaataaatccattagccatccaaagatgaatcaattcttccttcatgatttttgtatctttgcgaaatatagcacaaaaagcgaaacattgtt 7099795  T
Q  127 ttagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatgaaattttcatctgataaatcccaaagttcactgtctttaattttaagcca 226  Q
    ||| || ||  | |||||  ||||| |||||||||||||| ||||||||  |||| || |  | |||| |||| |  ||||| ||||||||||  | |||    
T  7099796 ttaaggttggtgataaatggaagtagctcaacctcaaagctggcaaaatagaattctcgtgcggtaaagcccagatctcactctctttaatttctaacca 7099895  T
Q  227 ttccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattacatttctttactatttcctttcctattgccacg 326  Q
    | | ||||| ||  | ||||| | ||||| ||  || |||| || ||||||||||||||||||   ||| || |||||||| ||||| ||||||  |||     
T  7099896 tgctttttcttcacttcttgaatgcattagacaccctaatgcttgtgctgcaagaggcaatcctccacacttttttactatctccttgcctattttcaca 7099995  T
Q  327 agattagcacgctcttctttgtaatgtccaaatgcatatt 366  Q
    || | ||||||||||||| |||||||||||||||||||||    
T  7099996 agctcagcacgctcttctctgtaatgtccaaatgcatatt 7100035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 3 - 159
Target Start/End: Complemental strand, 25293779 - 25293623
Alignment:
Q  3 acatcttcaacctccgtattacccctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaata 102  Q
    |||||||||||||||  |||  ||||||||||||| ||||||||||||||||||||   | |||||||||||||   ||||| || |||||| ||||| |    
T  25293779 acatcttcaacctccaaattttccctagatgaaataaatccattagccatccaaagatgagtcaattcttccttatcgatttttgtatcttttggaaaca 25293680  T
Q  103 tagcacaaaaagagaaacattgttttagggctgccggtaaataaaagtaactcaacc 159  Q
    ||||||||||||  |||||| | |||| ||  |  | |||||||||||| |||||||    
T  25293679 tagcacaaaaagcaaaacatcgctttaaggtcggagttaaataaaagtagctcaacc 25293623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 314 - 366
Target Start/End: Complemental strand, 25293485 - 25293433
Alignment:
Q  314 tcctattgccacgagattagcacgctcttctttgtaatgtccaaatgcatatt 366  Q
    ||||||||| || || || |||| ||| |||||||||||||||||||||||||    
T  25293485 tcctattgcgacaagttttgcacactcatctttgtaatgtccaaatgcatatt 25293433  T

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