View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5255_low_21 (Length: 347)
Name: NF5255_low_21
Description: NF5255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5255_low_21 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 16 - 347
Target Start/End: Complemental strand, 8535183 - 8534852
Alignment:
| Q |
16 |
caattcaatcttctacagcaagagaaaaccccttcaacttccacctaaccactctttagatgccaccactttcatctcctcccgcgctcatcacggccac |
115 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8535183 |
caattcaatcttctacagcaagagaaagccccttccacttccacctaaccactctttagatgccaccactttcatctcctcccgcgctcatcacggccat |
8535084 |
T |
|
| Q |
116 |
atcgccttcattgacgcctccaccggccaccaattcacctaccaacaactctggcgatccgtcgactccgtcacctcctcactctccaacatgggtatcc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8535083 |
atcgccttcattgacgcctccaccggccaccaattcacttaccaacaactctggcgatccgtcgactccgtcacctcctcactctccaacatgggtatcc |
8534984 |
T |
|
| Q |
216 |
gtaaaggtgacgtcatccttctcctctctcccaactccatctatttccctgttgtctgtctctccgtcatgtccctcggcgctatcatcaccaccaccaa |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8534983 |
gtaaaggtgacgtcatccttctcctctctcccaactccatctatttccctgttgtctgtctctccgtcatgtccctcggcgctatcatcaccaccaccaa |
8534884 |
T |
|
| Q |
316 |
tcctctcaatacatctggtgaaattgctaaac |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
8534883 |
tcctctcaatacatctggtgaaattgctaaac |
8534852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 16 - 347
Target Start/End: Original strand, 8547765 - 8548096
Alignment:
| Q |
16 |
caattcaatcttctacagcaagagaaaaccccttcaacttccacctaaccactctttagatgccaccactttcatctcctcccgcgctcatcacggccac |
115 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8547765 |
caattcaatcttctacagcaagagaaagccccttccacttccacctaaccactctttagatgccaccactttcatctcctcccgcgctcatcacggccat |
8547864 |
T |
|
| Q |
116 |
atcgccttcattgacgcctccaccggccaccaattcacctaccaacaactctggcgatccgtcgactccgtcacctcctcactctccaacatgggtatcc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8547865 |
atcgccttcattgacgcctccaccggccaccaattcacttaccaacaactctggcgatccgtcgactccgtcacctcctcactctccaacatgggtatcc |
8547964 |
T |
|
| Q |
216 |
gtaaaggtgacgtcatccttctcctctctcccaactccatctatttccctgttgtctgtctctccgtcatgtccctcggcgctatcatcaccaccaccaa |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8547965 |
gtaaaggtgacgtcatccttctcctctctcccaactccatctatttccctgttgtctgtctctccgtcatgtccctcggcgctatcatcaccaccaccaa |
8548064 |
T |
|
| Q |
316 |
tcctctcaatacatctggtgaaattgctaaac |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
8548065 |
tcctctcaatacatctggtgaaattgctaaac |
8548096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 16 - 347
Target Start/End: Complemental strand, 8600422 - 8600091
Alignment:
| Q |
16 |
caattcaatcttctacagcaagagaaaaccccttcaacttccacctaaccactctttagatgccaccactttcatctcctcccgcgctcatcacggccac |
115 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8600422 |
caattcaatcttctacagcaagagaaagccccttccacttccacctaaccactctttagatgccaccactttcatctcctcccgcgctcatcacggccat |
8600323 |
T |
|
| Q |
116 |
atcgccttcattgacgcctccaccggccaccaattcacctaccaacaactctggcgatccgtcgactccgtcacctcctcactctccaacatgggtatcc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8600322 |
atcgccttcattgacgcctccaccggccaccaattcacttaccaacaactctggcgatccgtcgactccgtcacctcctcactctccaacatgggtatcc |
8600223 |
T |
|
| Q |
216 |
gtaaaggtgacgtcatccttctcctctctcccaactccatctatttccctgttgtctgtctctccgtcatgtccctcggcgctatcatcaccaccaccaa |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8600222 |
gtaaaggtgacgtcatccttctcctctctcccaactccatctatttccctgttgtctgtctctccgtcatgtccctcggcgctatcatcaccaccaccaa |
8600123 |
T |
|
| Q |
316 |
tcctctcaatacatctggtgaaattgctaaac |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
8600122 |
tcctctcaatacatctggtgaaattgctaaac |
8600091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 16 - 347
Target Start/End: Original strand, 8613004 - 8613335
Alignment:
| Q |
16 |
caattcaatcttctacagcaagagaaaaccccttcaacttccacctaaccactctttagatgccaccactttcatctcctcccgcgctcatcacggccac |
115 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8613004 |
caattcaatcttctacagcaagagaaagccccttccacttccacctaaccactctttagatgccaccactttcatctcctcccgcgctcatcacggccat |
8613103 |
T |
|
| Q |
116 |
atcgccttcattgacgcctccaccggccaccaattcacctaccaacaactctggcgatccgtcgactccgtcacctcctcactctccaacatgggtatcc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8613104 |
atcgccttcattgacgcctccaccggccaccaattcacttaccaacaactctggcgatccgtcgactccgtcacctcctcactctccaacatgggtatcc |
8613203 |
T |
|
| Q |
216 |
gtaaaggtgacgtcatccttctcctctctcccaactccatctatttccctgttgtctgtctctccgtcatgtccctcggcgctatcatcaccaccaccaa |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8613204 |
gtaaaggtgacgtcatccttctcctctctcccaactccatctatttccctgttgtctgtctctccgtcatgtccctcggcgctatcatcaccaccaccaa |
8613303 |
T |
|
| Q |
316 |
tcctctcaatacatctggtgaaattgctaaac |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
8613304 |
tcctctcaatacatctggtgaaattgctaaac |
8613335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 16 - 324
Target Start/End: Complemental strand, 14752854 - 14752546
Alignment:
| Q |
16 |
caattcaatcttctacagcaagagaaaaccccttcaacttccacctaaccactctttagatgccaccactttcatctcctcccgcgctcatcacggccac |
115 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| | |||||| || || || || |||||||||||||| || |||||||||||||| |||||||||||| |
|
|
| T |
14752854 |
caattcaatcttctacagcaagaggaaacccctcctacttcctccaaatcagtccttagatgccaccacctttatctcctcccgcgcccatcacggccac |
14752755 |
T |
|
| Q |
116 |
atcgccttcattgacgcctccaccggccaccaattcacctaccaacaactctggcgatccgtcgactccgtcacctcctcactctccaacatgggtatcc |
215 |
Q |
| |
|
| || ||||| |||||||||||||||||||| || |||||||||||||| ||| || ||||||| | ||| ||||||| |||||||||||||| ||| |
|
|
| T |
14752754 |
actgctttcatcgacgcctccaccggccaccactttacctaccaacaactttggagagccgtcgatgctgtctcctcctctctctccaacatgggaatca |
14752655 |
T |
|
| Q |
216 |
gtaaaggtgacgtcatccttctcctctctcccaactccatctatttccctgttgtctgtctctccgtcatgtccctcggcgctatcatcaccaccaccaa |
315 |
Q |
| |
|
|| ||||| || ||||| ||||| ||||| |||||||| || |||||||| || |||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
14752654 |
aaaagggtgatgttatcctcctcctttctcctaactccatttacttccctgtggtgtgtctcagtgtcatgtccctcggcgccatcatcaccaccaccaa |
14752555 |
T |
|
| Q |
316 |
tcctctcaa |
324 |
Q |
| |
|
||| ||||| |
|
|
| T |
14752554 |
tcccctcaa |
14752546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University