View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5255_low_23 (Length: 320)
Name: NF5255_low_23
Description: NF5255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5255_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 17 - 315
Target Start/End: Original strand, 32017637 - 32017940
Alignment:
| Q |
17 |
catcctccacttttactgctcctttaacctgttaacaggctgttctggttgctnnnnnnnnn-----ctagcaatatttttctctgcccagaccttcttt |
111 |
Q |
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| T |
32017637 |
catcccccacttttattgctcctttaacctgttaacaggctgttctggttgctaaaaaaaaaaaaaactagcaatatttttctctgcccagaccttcttt |
32017736 |
T |
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| Q |
112 |
ccattgccaaaggaccttgtagtgaccatatacggttgtgatggtctgtctgtcatcatcatcataccattcccaatttcaaaaccattcaattgttcta |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
32017737 |
ccattgccaaaggaccttgtagtgaccatatacggttgtgatggtctgtctgtcatcatcatcataccattctcaatttcaaaaccattcaattgttcta |
32017836 |
T |
|
| Q |
212 |
attcacttttgttctcaatttcaatttctaacaaccacccctcttctcagtttcatgaaagaaagatgggtggcgctgaatctggaaccaccgaaccctt |
311 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32017837 |
attcacttttgttcttaatttcaatttctaacaaccacccctcttctcagtttcatgaaagaaagatgggtggcgctgaatctggaaccatcgaaccctt |
32017936 |
T |
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| Q |
312 |
tgct |
315 |
Q |
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|||| |
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| T |
32017937 |
tgct |
32017940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 102 - 226
Target Start/End: Original strand, 10421789 - 10421907
Alignment:
| Q |
102 |
gaccttctttccattgccaaaggaccttgtagtgaccatatacggttgtgatggtctgtctgtcatcatcatcataccattcccaatttcaaaaccattc |
201 |
Q |
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| T |
10421789 |
gaccttttttgcatagccaaatgaccttgtagtgacc--atacggttgtgat----agtccgtcgtcatcatgataccattctcaatttcaaaaccatcc |
10421882 |
T |
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| Q |
202 |
aattgttctaattcacttttgttct |
226 |
Q |
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| T |
10421883 |
aattgttctaattcactttcgttct |
10421907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 252
Target Start/End: Original strand, 19749736 - 19749810
Alignment:
| Q |
178 |
ccattcccaatttcaaaaccattcaattgttctaattcacttttgttctcaatttcaatttctaacaaccacccc |
252 |
Q |
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| T |
19749736 |
ccattctcaatttcaataccatccaactattctatttcactttcattttcaatctcaatttctaacaaccacccc |
19749810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 252
Target Start/End: Original strand, 11590374 - 11590448
Alignment:
| Q |
178 |
ccattcccaatttcaaaaccattcaattgttctaattcacttttgttctcaatttcaatttctaacaaccacccc |
252 |
Q |
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| T |
11590374 |
ccattctcaatttcaataccatccaactattctatttcactttcattttcaatctcaatttctaacaaccacccc |
11590448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 252
Target Start/End: Complemental strand, 44553701 - 44553627
Alignment:
| Q |
178 |
ccattcccaatttcaaaaccattcaattgttctaattcacttttgttctcaatttcaatttctaacaaccacccc |
252 |
Q |
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|||||| ||||||||| ||||| ||| | ||||| |||||||| || ||||| ||||||||||||||||||||| |
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| T |
44553701 |
ccattctcaatttcaataccatccaactattctatttcactttcattttcaatctcaatttctaacaaccacccc |
44553627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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