View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5255_low_27 (Length: 301)
Name: NF5255_low_27
Description: NF5255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5255_low_27 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 78 - 279
Target Start/End: Original strand, 35900799 - 35901005
Alignment:
| Q |
78 |
tttttgcttggtttatatcccaaattgttgggatcagtgaaaaagtatgaacattttgttcttannnnnnngtgcgtctgatcctctttgtctgaataat |
177 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
35900799 |
tttttgcttggtttatatcccaaattgttgggatcagtgaaaaagtatgaacattttgttcttatttttttgtgcgtctgatcctctttgactgaataat |
35900898 |
T |
|
| Q |
178 |
tcagtatttcaattcaaagatctgttattgaggtttgaatgtggtgaa-----tatttgtgttcttgactgttcttacgctcccgaaggtgacaggcaaa |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35900899 |
tcagtatttcaattcaaagatctgttattgaggtttgaatgtggtgaatactgtatttgtgttcttgactgttcttacgctcccgaaggtgacaggcaaa |
35900998 |
T |
|
| Q |
273 |
agattgg |
279 |
Q |
| |
|
||||||| |
|
|
| T |
35900999 |
agattgg |
35901005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 110 - 264
Target Start/End: Original strand, 35884617 - 35884770
Alignment:
| Q |
110 |
atcagtgaaaaagtatgaacattttgttcttannnnnnngtgcgtctgatcctctttgtctgaataattcagtatttcaattcaaagatctgttattgag |
209 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||||||||||| || |||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
35884617 |
atcagtgaaaaagtatgaatgttttgttcttattttct-gtgcgtctgatcctctctgactgaataattaagtatttcaattcaaagatttgttattgag |
35884715 |
T |
|
| Q |
210 |
gtttgaatgtggtgaatatttgtgttcttgactgttcttacgctcccgaaggtga |
264 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
35884716 |
gtttgaacgtggtaaatatttgtgttcttgactgttcttacgctcctgaaggtga |
35884770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 200
Target Start/End: Complemental strand, 10209763 - 10209712
Alignment:
| Q |
149 |
gtgcgtctgatcctctttgtctgaataattcagtatttcaattcaaagatct |
200 |
Q |
| |
|
|||| ||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
10209763 |
gtgcatctgatcctctctgactgaataattcagtatttcaattcaaagatct |
10209712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University