View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5255_low_29 (Length: 299)
Name: NF5255_low_29
Description: NF5255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5255_low_29 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 104 - 290
Target Start/End: Original strand, 18825246 - 18825432
Alignment:
| Q |
104 |
atattcaatacacaatatgaaggacattaaggggttatgcataacaaattgttgaccactgtannnnnnnatgaatcataaaaaatgaactttagtttaa |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||| |
|
|
| T |
18825246 |
atattcaatacacaatatgaaggacattaaggggttatgcataacaaattgttgaccattgtatttttttatggatcataaaaaatgaactttagtttaa |
18825345 |
T |
|
| Q |
204 |
aagaaaacttgtggatgttgtaaagattgaaagccgtgtataggtttgtcaaatgtgacttacagcaatgaacatattatagtataa |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18825346 |
aagaaaacttgtggatgttgtaaagattgaaagtcgtgtataggtttgtcaaatgtgacttacagcaatgaacatattatagtataa |
18825432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 18825135 - 18825223
Alignment:
| Q |
18 |
gttgtgaggagtacttgataataatatagtatgaaactcaaaatgaattccttnnnnnnntatcaatgaaagatgctctgaatgtgata |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
18825135 |
gttgtgaggagtacttgataataatatagtatgaaactcaaaatgaattccttaaaaaaatatcaatgaaagatgctctgaatgtgata |
18825223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University