View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5255_low_3 (Length: 514)
Name: NF5255_low_3
Description: NF5255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5255_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 368
Target Start/End: Complemental strand, 36458396 - 36458064
Alignment:
| Q |
18 |
tcatcaagccgcgtcagatagtttgttgacatggcaagcttttaagaagatgaaggacatttattttgtcaacaatggaatcactatgcacgcaggggtg |
117 |
Q |
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| T |
36458396 |
tcatcaagccgcgtcagatagtttgttgacatggcaagcttttaagaagatgaaggacatttattttgtcaacaatggaatcactatgcacgcaggggtg |
36458297 |
T |
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| Q |
118 |
ttatttggtttagaagtgacagtttaggattagaaaaagaaaattgtaaaaatatattggtattctttgttttggaatcaacgttattactttaatgtct |
217 |
Q |
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| T |
36458296 |
ttatttgggttagaagtgacagtttaggattagaaaaagaaaattgtaaaaatatattggtattctttgttttggaatcaacgttattactttaatgtct |
36458197 |
T |
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| Q |
218 |
atattactactttagtttctctaaagcttatcatgaattagaaacttgaatgaaatagagagccacataaagtgaaagcctattatccaaccaatggcat |
317 |
Q |
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| T |
36458196 |
atattactactttagtttctctaaagcttatca-----------------tgaaatagagagccacataaagtgaaagcctattatccaaccaatggcat |
36458114 |
T |
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| Q |
318 |
actcctcctaggtgatagaaataatttatagcaagctctaattcaaaataa |
368 |
Q |
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| T |
36458113 |
gctcctcctaggtgatacaagtaatttgtag-aagctctaagtcgaaataa |
36458064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 369 - 493
Target Start/End: Complemental strand, 36457924 - 36457800
Alignment:
| Q |
369 |
aaataagatgcaaatgagtacatgaggtactcaaccccaatacacaatgttcaacttctataacattctaaatagcataaactccagccgcagaatgtca |
468 |
Q |
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| T |
36457924 |
aaataagatgcatatgagtacataaggtactcaaccccaatacacaatgttcaacttttataacattctaaatagcataaactccagccagagaatgtca |
36457825 |
T |
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| Q |
469 |
ttttcggtctgctacctattttcga |
493 |
Q |
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| T |
36457824 |
ttttcggtctgctacctattttcga |
36457800 |
T |
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