View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5255_low_30 (Length: 291)
Name: NF5255_low_30
Description: NF5255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5255_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 49 - 154
Target Start/End: Original strand, 32588596 - 32588701
Alignment:
| Q |
49 |
gttcaataaaatggaacaattagtcaccccatcttgtcccaaccaagtcgtcttacatatgctactatatccgttttaaaattccctcacaaacacgcat |
148 |
Q |
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| T |
32588596 |
gttcaataaaatggaacaattagtcaccccatcttgtcccaaccaagtcgtcttacatatgctactatatccgttttaaaattccctcacaaacacgcat |
32588695 |
T |
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| Q |
149 |
aaacat |
154 |
Q |
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|||||| |
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| T |
32588696 |
aaacat |
32588701 |
T |
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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 249 - 282
Target Start/End: Original strand, 32588796 - 32588829
Alignment:
| Q |
249 |
cattaatgtgatagtttgattcctgaagtataat |
282 |
Q |
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| T |
32588796 |
cattaatgtgatagtttgattcctgaagtataat |
32588829 |
T |
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