View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5255_low_31 (Length: 288)

Name: NF5255_low_31
Description: NF5255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5255_low_31
NF5255_low_31
[»] chr8 (15 HSPs)
chr8 (1-271)||(5720943-5721213)
chr8 (1-235)||(5688247-5688475)
chr8 (106-229)||(5668466-5668588)
chr8 (106-194)||(5653951-5654039)
chr8 (234-271)||(43599302-43599339)
chr8 (235-271)||(15857171-15857207)
chr8 (235-271)||(18313776-18313812)
chr8 (235-268)||(30176543-30176576)
chr8 (235-271)||(8559573-8559609)
chr8 (235-271)||(8559754-8559790)
chr8 (235-271)||(22188927-22188963)
chr8 (235-271)||(30065983-30066019)
chr8 (235-271)||(33435671-33435707)
chr8 (235-271)||(33435875-33435911)
chr8 (235-271)||(43599510-43599546)
[»] chr4 (12 HSPs)
chr4 (105-218)||(105234-105347)
chr4 (112-222)||(165882-165992)
chr4 (233-270)||(21647658-21647695)
chr4 (235-271)||(39110899-39110935)
chr4 (235-271)||(5066051-5066087)
chr4 (243-271)||(7892728-7892756)
chr4 (235-271)||(8560047-8560083)
chr4 (235-271)||(28497290-28497326)
chr4 (235-271)||(43943665-43943701)
chr4 (235-271)||(49380956-49380992)
chr4 (235-271)||(53559381-53559417)
chr4 (235-271)||(53720746-53720782)
[»] chr3 (18 HSPs)
chr3 (98-220)||(12136454-12136576)
chr3 (235-271)||(42258902-42258938)
chr3 (235-271)||(54495523-54495559)
chr3 (233-268)||(22407727-22407762)
chr3 (240-271)||(37541935-37541966)
chr3 (234-268)||(22339732-22339766)
chr3 (235-268)||(9264372-9264405)
chr3 (235-268)||(54591544-54591577)
chr3 (235-271)||(4029720-4029756)
chr3 (235-271)||(9264162-9264198)
chr3 (235-271)||(9264576-9264612)
chr3 (235-271)||(10758844-10758880)
chr3 (235-271)||(19984477-19984513)
chr3 (235-271)||(25627997-25628033)
chr3 (235-271)||(29369793-29369829)
chr3 (235-271)||(35015477-35015513)
chr3 (233-269)||(46412288-46412324)
chr3 (235-271)||(53640041-53640077)
[»] chr7 (12 HSPs)
chr7 (105-223)||(13053748-13053866)
chr7 (235-271)||(2179646-2179682)
chr7 (235-271)||(4258280-4258316)
chr7 (233-271)||(35866715-35866753)
chr7 (234-271)||(16564885-16564922)
chr7 (234-271)||(16600740-16600777)
chr7 (235-271)||(10903560-10903596)
chr7 (235-271)||(16565090-16565126)
chr7 (235-271)||(16600536-16600572)
chr7 (235-271)||(23396601-23396637)
chr7 (235-271)||(29646056-29646092)
chr7 (235-271)||(33855683-33855719)
[»] scaffold0013 (1 HSPs)
scaffold0013 (105-221)||(91404-91520)
[»] chr2 (10 HSPs)
chr2 (233-271)||(6986492-6986530)
chr2 (235-271)||(3435562-3435598)
chr2 (233-271)||(39108078-39108116)
chr2 (235-271)||(883677-883713)
chr2 (235-271)||(10485170-10485206)
chr2 (235-271)||(12419830-12419866)
chr2 (235-271)||(12431890-12431926)
chr2 (235-271)||(12432097-12432133)
chr2 (235-271)||(17727396-17727432)
chr2 (235-271)||(40009966-40010002)
[»] chr5 (16 HSPs)
chr5 (234-271)||(10516344-10516381)
chr5 (237-271)||(30330643-30330677)
chr5 (237-271)||(32501205-32501239)
chr5 (234-271)||(15286844-15286881)
chr5 (235-271)||(9198805-9198841)
chr5 (235-271)||(13413782-13413818)
chr5 (235-271)||(18107554-18107590)
chr5 (235-271)||(20720419-20720455)
chr5 (235-271)||(20720626-20720662)
chr5 (235-271)||(36307998-36308034)
chr5 (235-271)||(37781920-37781956)
chr5 (235-271)||(38376723-38376759)
chr5 (235-271)||(39268010-39268046)
chr5 (235-271)||(39268218-39268254)
chr5 (235-271)||(43490332-43490368)
chr5 (232-268)||(43490542-43490578)
[»] chr1 (8 HSPs)
chr1 (235-271)||(5325002-5325038)
chr1 (242-272)||(42844890-42844920)
chr1 (235-268)||(12314570-12314603)
chr1 (234-271)||(52846925-52846962)
chr1 (235-271)||(15392017-15392053)
chr1 (235-271)||(21428134-21428170)
chr1 (235-271)||(39649160-39649196)
chr1 (235-271)||(47377827-47377863)
[»] chr6 (7 HSPs)
chr6 (235-268)||(15101190-15101223)
chr6 (234-271)||(25998808-25998845)
chr6 (234-271)||(26098333-26098370)
chr6 (235-271)||(6623501-6623537)
chr6 (233-269)||(11316833-11316869)
chr6 (235-271)||(13692244-13692280)
chr6 (235-271)||(24558575-24558611)
[»] scaffold0434 (1 HSPs)
scaffold0434 (232-268)||(13295-13331)


Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 5721213 - 5720943
Alignment:
Q  1 ttaaaggtaacttagtaactaacgaactacataggccagtgtgctgtttattcttttaatcagatgcaaaatatatacaaatgtttgttaaccaattttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5721213 ttaaaggtaacttagtaactaacgaactacataggccagtgtgctgtttattcttttaatcagatgcaaaatatatacaaatgtttgttaaccaattttc 5721114  T
Q  101 ttatgtgttttagtgttgtctgcttttatcaatgttgcctccggagattgtgggagaaaagatggaacctgaaaggttatatgatgcggtcaatatccta 200  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||| | ||||||||| |     
T  5721113 ttatgtgttttagtgttgtctgcttttatcaatgttgcctccagagattgtgggggaaaaaatggaacctgaaaggttatatgattcagtcaatatcttg 5721014  T
Q  201 ttttctcttcaggcaagtactacatactactctctattgggaaaaattcaagtcccacatcggatagataa 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  5721013 ttttctcttcaggcaagtactacatactactctctattgggaaaaatccaagtcccacatcggatagataa 5720943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 5688475 - 5688247
Alignment:
Q  1 ttaaaggtaacttagtaactaacgaactacataggccagtgtgctgtttattcttttaatcagatgcaaaatatatacaaatgtttgttaaccaattttc 100  Q
    ||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||    | ||| ||||||||| |||||||    
T  5688475 ttaaaggtaacttagtaactaacgaactacataagccagtg--ctgtttattcttttaatcagatgcaaaata----ctaatatttgttaactaattttc 5688382  T
Q  101 ttatgtgttttagtgttgtctgcttttatcaatgttgcctccggagattgtgggagaaaagatggaacctgaaaggttatatgatgcggtcaatatccta 200  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||| |||||||||||||||||||||||| | ||||||||| |     
T  5688381 ttatgtgttttagtgttgtctgcttttatcaatgttgtctccggagattgtaggggaaaaaatggaacctgaaaggttatatgattccgtcaatatcatg 5688282  T
Q  201 ttttctcttcaggcaagtactacatactactctct 235  Q
    |||||||||||||||||||||||||||||||||||    
T  5688281 ttttctcttcaggcaagtactacatactactctct 5688247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 106 - 229
Target Start/End: Complemental strand, 5668588 - 5668466
Alignment:
Q  106 tgttttagtgttgtctgcttttatcaatgttgcctccggagattgtgggagaaaagatggaacctgaaaggttatatgatgcggtcaatatcctattttc 205  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5668588 tgttttagtgttgtctgcttttatcgatgctgcctccggagattgtggg-gaaaagatggaacctgaaaggttatatgatgcggtcaatatcctattttc 5668490  T
Q  206 tcttcaggcaagtactacatacta 229  Q
    ||||||||||||||| ||||||||    
T  5668489 tcttcaggcaagtacaacatacta 5668466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 106 - 194
Target Start/End: Complemental strand, 5654039 - 5653951
Alignment:
Q  106 tgttttagtgttgtctgcttttatcaatgttgcctccggagattgtgggagaaaagatggaacctgaaaggttatatgatgcggtcaat 194  Q
    ||||| |||||||||| ||||| ||||||||||||||  |||||||||| |||| | | ||||| |||||| |||||||| | ||||||    
T  5654039 tgtttcagtgttgtctacttttgtcaatgttgcctccaaagattgtgggggaaatggttgaacccgaaaggctatatgattcagtcaat 5653951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 234 - 271
Target Start/End: Original strand, 43599302 - 43599339
Alignment:
Q  234 ctattgggaaaaattcaagtcccacatcggatagataa 271  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  43599302 ctattgggaaaaactcaagtcccacatcggatagataa 43599339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 15857171 - 15857207
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    |||||||||||| ||||||||||||||||||||||||    
T  15857171 tattgggaaaaactcaagtcccacatcggatagataa 15857207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 18313776 - 18313812
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    ||||||||||||| |||||||||||||||||||||||    
T  18313776 tattgggaaaaatccaagtcccacatcggatagataa 18313812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 268
Target Start/End: Complemental strand, 30176576 - 30176543
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggataga 268  Q
    |||||||||||| |||||||||||||||||||||    
T  30176576 tattgggaaaaactcaagtcccacatcggataga 30176543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 8559573 - 8559609
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    ||||||||||||  |||||||||||||||||||||||    
T  8559573 tattgggaaaaacccaagtcccacatcggatagataa 8559609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 8559790 - 8559754
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    ||||||||||||  |||||||||||||||||||||||    
T  8559790 tattgggaaaaacccaagtcccacatcggatagataa 8559754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 22188927 - 22188963
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    |||||||||||| ||| ||||||||||||||||||||    
T  22188927 tattgggaaaaactcatgtcccacatcggatagataa 22188963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 30065983 - 30066019
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    |||||||||||| |||||||||||||| |||||||||    
T  30065983 tattgggaaaaactcaagtcccacatcagatagataa 30066019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 33435671 - 33435707
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    |||||||||||| ||||||| ||||||||||||||||    
T  33435671 tattgggaaaaactcaagtctcacatcggatagataa 33435707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 33435875 - 33435911
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    ||||||||||||  |||||||||||||||||||||||    
T  33435875 tattgggaaaaacccaagtcccacatcggatagataa 33435911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 43599510 - 43599546
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    ||||||||||||  |||||||||||||||||||||||    
T  43599510 tattgggaaaaacccaagtcccacatcggatagataa 43599546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 105 - 218
Target Start/End: Original strand, 105234 - 105347
Alignment:
Q  105 gtgttttagtgttgtctgcttttatcaatgttgcctccggagattgtgggagaaaagatggaacctgaaaggttatatgatgcggtcaatatcctatttt 204  Q
    |||||| |||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||| |||||||| || | || |    
T  105234 gtgtttcagtgttgtctacttttatcaatgttgcctccagagattgtgggggaaaagatggaaccagaaaggttatatgattcggtcaatgtcttgttgt 105333  T
Q  205 ctcttcaggcaagt 218  Q
    | ||||||||||||    
T  105334 cgcttcaggcaagt 105347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 112 - 222
Target Start/End: Original strand, 165882 - 165992
Alignment:
Q  112 agtgttgtctgcttttatcaatgttgcctccggagattgtgggagaaaagatggaacctgaaaggttatatgatgcggtcaatatcctattttctcttca 211  Q
    |||||||||| | |||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||| | |||||||||||  | || |||||    
T  165882 agtgttgtctacatttatcaatgttgcctccagagattgtgggggaaaagatggaaccagaaaggttatatgattcagtcaatatcctgctgtcgcttca 165981  T
Q  212 ggcaagtacta 222  Q
    |||||||||||    
T  165982 ggcaagtacta 165992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 233 - 270
Target Start/End: Complemental strand, 21647695 - 21647658
Alignment:
Q  233 tctattgggaaaaattcaagtcccacatcggatagata 270  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  21647695 tctattgagaaaaattcaagtcccacatcggatagata 21647658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 39110899 - 39110935
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    |||||||||||| ||||||||||||||||||||||||    
T  39110899 tattgggaaaaactcaagtcccacatcggatagataa 39110935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 5066051 - 5066087
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  5066051 tattgggaaaaattcaagtcccacatcagataaataa 5066087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 7892756 - 7892728
Alignment:
Q  243 aaaattcaagtcccacatcggatagataa 271  Q
    |||||||||||||||||||||||||||||    
T  7892756 aaaattcaagtcccacatcggatagataa 7892728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 8560083 - 8560047
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    ||||||||||| | |||||||||||||||||||||||    
T  8560083 tattgggaaaagtccaagtcccacatcggatagataa 8560047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 28497326 - 28497290
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    ||||||||||||  |||||||||||||||||||||||    
T  28497326 tattgggaaaaacccaagtcccacatcggatagataa 28497290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 43943665 - 43943701
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    ||||||||||||  |||||||||||||||||||||||    
T  43943665 tattgggaaaaacccaagtcccacatcggatagataa 43943701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 49380992 - 49380956
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    ||||||||||||| |||||| ||||||||||||||||    
T  49380992 tattgggaaaaatccaagtctcacatcggatagataa 49380956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 53559417 - 53559381
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    ||||||||||||  |||||||||||||||||||||||    
T  53559417 tattgggaaaaaaccaagtcccacatcggatagataa 53559381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 53720782 - 53720746
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    |||||||||||| | ||||||||||||||||||||||    
T  53720782 tattgggaaaaactgaagtcccacatcggatagataa 53720746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 8e-30; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 98 - 220
Target Start/End: Complemental strand, 12136576 - 12136454
Alignment:
Q  98 ttcttatgtgttttagtgttgtctgcttttatcaatgttgcctccggagattgtgggagaaaagatggaacctgaaaggttatatgatgcggtcaatatc 197  Q
    ||||| ||||||| ||||||| || ||||||||| ||||||||||  ||||||| || |||||||||||||| ||||||||||||||| | || ||||||    
T  12136576 ttcttttgtgtttcagtgttgcctacttttatcagtgttgcctccaaagattgtaggggaaaagatggaaccagaaaggttatatgattcagttaatatc 12136477  T
Q  198 ctattttctcttcaggcaagtac 220  Q
    ||||| |||||||||||||||||    
T  12136476 ctattgtctcttcaggcaagtac 12136454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 42258902 - 42258938
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    ||||||||||||| |||||||||||||||||||||||    
T  42258902 tattgggaaaaatccaagtcccacatcggatagataa 42258938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 54495523 - 54495559
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    ||||||||||||| |||||||||||||||||||||||    
T  54495523 tattgggaaaaatccaagtcccacatcggatagataa 54495559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 233 - 268
Target Start/End: Complemental strand, 22407762 - 22407727
Alignment:
Q  233 tctattgggaaaaattcaagtcccacatcggataga 268  Q
    ||||||||||||||| ||||||||||||||||||||    
T  22407762 tctattgggaaaaatccaagtcccacatcggataga 22407727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 240 - 271
Target Start/End: Complemental strand, 37541966 - 37541935
Alignment:
Q  240 ggaaaaattcaagtcccacatcggatagataa 271  Q
    ||||||||||||||||||||||||||||||||    
T  37541966 ggaaaaattcaagtcccacatcggatagataa 37541935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 234 - 268
Target Start/End: Original strand, 22339732 - 22339766
Alignment:
Q  234 ctattgggaaaaattcaagtcccacatcggataga 268  Q
    |||||||||||||| ||||||||||||||||||||    
T  22339732 ctattgggaaaaatccaagtcccacatcggataga 22339766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 268
Target Start/End: Complemental strand, 9264405 - 9264372
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggataga 268  Q
    ||||||||||||| ||||||||||||||||||||    
T  9264405 tattgggaaaaatccaagtcccacatcggataga 9264372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 268
Target Start/End: Complemental strand, 54591577 - 54591544
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggataga 268  Q
    ||||||||||||| ||||||||||||||||||||    
T  54591577 tattgggaaaaatccaagtcccacatcggataga 54591544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 4029756 - 4029720
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    ||||||||| ||| |||||||||||||||||||||||    
T  4029756 tattgggaataatgcaagtcccacatcggatagataa 4029720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 9264198 - 9264162
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    ||||||||||||  |||||||||||||||||||||||    
T  9264198 tattgggaaaaacccaagtcccacatcggatagataa 9264162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 9264612 - 9264576
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    ||||||||||||  |||||||||||||||||||||||    
T  9264612 tattgggaaaaacccaagtcccacatcggatagataa 9264576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 10758880 - 10758844
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  10758880 tattggaaaaaactcaagtcccacatcggatagataa 10758844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 19984513 - 19984477
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    |||||||||||| ||| ||||||||||||||||||||    
T  19984513 tattgggaaaaactcatgtcccacatcggatagataa 19984477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 25628033 - 25627997
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    ||||||||||||  |||||||||||||||||||||||    
T  25628033 tattgggaaaaacccaagtcccacatcggatagataa 25627997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 29369793 - 29369829
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    ||||||||||||  |||||||||||||||||||||||    
T  29369793 tattgggaaaaacccaagtcccacatcggatagataa 29369829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 35015477 - 35015513
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    ||||||||||||  |||||||||||||||||||||||    
T  35015477 tattgggaaaaagccaagtcccacatcggatagataa 35015513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 269
Target Start/End: Complemental strand, 46412324 - 46412288
Alignment:
Q  233 tctattgggaaaaattcaagtcccacatcggatagat 269  Q
    |||| ||||||||||||| ||||||||||||||||||    
T  46412324 tctactgggaaaaattcatgtcccacatcggatagat 46412288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 53640077 - 53640041
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  53640077 tattgggaaaaatccaagtcccatatcggatagataa 53640041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 105 - 223
Target Start/End: Original strand, 13053748 - 13053866
Alignment:
Q  105 gtgttttagtgttgtctgcttttatcaatgttgcctccggagattgtgggagaaaagatggaacctgaaaggttatatgatgcggtcaatatcctatttt 204  Q
    |||||| |||||||||| |||||||||||||||||||| ||||||||||| ||||| |||||||| || |||||||||||| | |||||| | || || |    
T  13053748 gtgtttcagtgttgtctacttttatcaatgttgcctcctgagattgtgggtgaaaatatggaaccagagaggttatatgattcagtcaatcttctgttgt 13053847  T
Q  205 ctcttcaggcaagtactac 223  Q
    | ||||||| |||| ||||    
T  13053848 cacttcaggtaagttctac 13053866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 2179646 - 2179682
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    |||||||||||||||||||||||||||||||||||||    
T  2179646 tattgggaaaaattcaagtcccacatcggatagataa 2179682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 4258316 - 4258280
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    |||||||||||| ||||||||||||||||||||||||    
T  4258316 tattgggaaaaactcaagtcccacatcggatagataa 4258280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 271
Target Start/End: Complemental strand, 35866753 - 35866715
Alignment:
Q  233 tctattgggaaaaattcaagtcccacatcggatagataa 271  Q
    ||||||||||||||  |||||||||||||||||||||||    
T  35866753 tctattgggaaaaacccaagtcccacatcggatagataa 35866715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 271
Target Start/End: Original strand, 16564885 - 16564922
Alignment:
Q  234 ctattgggaaaaattcaagtcccacatcggatagataa 271  Q
    |||||||||||||  |||||||||||||||||||||||    
T  16564885 ctattgggaaaaacccaagtcccacatcggatagataa 16564922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 271
Target Start/End: Complemental strand, 16600777 - 16600740
Alignment:
Q  234 ctattgggaaaaattcaagtcccacatcggatagataa 271  Q
    |||||||||||||  |||||||||||||||||||||||    
T  16600777 ctattgggaaaaacccaagtcccacatcggatagataa 16600740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 10903596 - 10903560
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    |||||||||||| ||| ||||||||||||||||||||    
T  10903596 tattgggaaaaactcatgtcccacatcggatagataa 10903560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 16565090 - 16565126
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    ||||||||||||  |||||||||||||||||||||||    
T  16565090 tattgggaaaaacccaagtcccacatcggatagataa 16565126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 16600572 - 16600536
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    ||||||||||||  |||||||||||||||||||||||    
T  16600572 tattgggaaaaacccaagtcccacatcggatagataa 16600536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 23396601 - 23396637
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    ||||||||||||| ||||||||||| |||||||||||    
T  23396601 tattgggaaaaatccaagtcccacaacggatagataa 23396637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 29646056 - 29646092
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  29646056 tattgggaaaaattcatgtcccacattggatagataa 29646092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 33855683 - 33855719
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    ||||||||||||  |||||||||||||||||||||||    
T  33855683 tattgggaaaaacccaagtcccacatcggatagataa 33855719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 105 - 221
Target Start/End: Complemental strand, 91520 - 91404
Alignment:
Q  105 gtgttttagtgttgtctgcttttatcaatgttgcctccggagattgtgggagaaaagatggaacctgaaaggttatatgatgcggtcaatatcctatttt 204  Q
    |||||| |||||||| | || ||||||||||| ||||| |  | |||||| |||||||||||||| ||||||||||||||| | |||||| |||| || |    
T  91520 gtgtttcagtgttgtttactattatcaatgtttcctccagcaactgtgggggaaaagatggaaccggaaaggttatatgattcagtcaatctcctgttgt 91421  T
Q  205 ctcttcaggcaagtact 221  Q
    | ||||||||| |||||    
T  91420 cacttcaggcatgtact 91404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 271
Target Start/End: Complemental strand, 6986530 - 6986492
Alignment:
Q  233 tctattgggaaaaattcaagtcccacatcggatagataa 271  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  6986530 tctattgggaaaaatccaagtcccacatcggatagataa 6986492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 3435598 - 3435562
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    |||||| ||||||||||||||||||||||||||||||    
T  3435598 tattggaaaaaattcaagtcccacatcggatagataa 3435562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 271
Target Start/End: Original strand, 39108078 - 39108116
Alignment:
Q  233 tctattgggaaaaattcaagtcccacatcggatagataa 271  Q
    ||||||||||||||||||||||||||||| |||| ||||    
T  39108078 tctattgggaaaaattcaagtcccacatcagatatataa 39108116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 883713 - 883677
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    ||||||||||||  |||||||||||||||||||||||    
T  883713 tattgggaaaaacccaagtcccacatcggatagataa 883677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 10485170 - 10485206
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    ||||||||||||| || ||||||||||||||||||||    
T  10485170 tattgggaaaaatccatgtcccacatcggatagataa 10485206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 12419830 - 12419866
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    ||||||||||||  |||||||||||||||||||||||    
T  12419830 tattgggaaaaacccaagtcccacatcggatagataa 12419866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 12431890 - 12431926
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    ||||||||||||  |||||||||||||||||||||||    
T  12431890 tattgggaaaaacccaagtcccacatcggatagataa 12431926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 12432097 - 12432133
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    |||||| |||||| |||||||||||||||||||||||    
T  12432097 tattggaaaaaatccaagtcccacatcggatagataa 12432133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 17727396 - 17727432
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    ||||||||||||  |||||||||||||||||||||||    
T  17727396 tattgggaaaaacccaagtcccacatcggatagataa 17727432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 40009966 - 40010002
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    ||||||||||||  |||||||||||||||||||||||    
T  40009966 tattgggaaaaacccaagtcccacatcggatagataa 40010002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 234 - 271
Target Start/End: Complemental strand, 10516381 - 10516344
Alignment:
Q  234 ctattgggaaaaattcaagtcccacatcggatagataa 271  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  10516381 ctattgggaaaaactcaagtcccacatcggatagataa 10516344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 237 - 271
Target Start/End: Original strand, 30330643 - 30330677
Alignment:
Q  237 ttgggaaaaattcaagtcccacatcggatagataa 271  Q
    ||||||||||| |||||||||||||||||||||||    
T  30330643 ttgggaaaaatccaagtcccacatcggatagataa 30330677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 237 - 271
Target Start/End: Original strand, 32501205 - 32501239
Alignment:
Q  237 ttgggaaaaattcaagtcccacatcggatagataa 271  Q
    ||||||||||| |||||||||||||||||||||||    
T  32501205 ttgggaaaaatccaagtcccacatcggatagataa 32501239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 271
Target Start/End: Original strand, 15286844 - 15286881
Alignment:
Q  234 ctattgggaaaaattcaagtcccacatcggatagataa 271  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  15286844 ctattgggaaaaatccaagtctcacatcggatagataa 15286881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 9198841 - 9198805
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  9198841 tattgggaaaaattcatgtctcacatcggatagataa 9198805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 13413782 - 13413818
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    ||||||||||||  |||||||||||||||||||||||    
T  13413782 tattgggaaaaacccaagtcccacatcggatagataa 13413818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 18107590 - 18107554
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    ||||||||||||  |||||||||||||||||||||||    
T  18107590 tattgggaaaaacccaagtcccacatcggatagataa 18107554  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 20720455 - 20720419
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    |||||| ||||||||||||||||||| ||||||||||    
T  20720455 tattggaaaaaattcaagtcccacataggatagataa 20720419  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 20720662 - 20720626
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    |||||||||||| |||||||||||||| |||||||||    
T  20720662 tattgggaaaaactcaagtcccacatcagatagataa 20720626  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 36308034 - 36307998
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    |||||| |||||||||||| |||||||||||||||||    
T  36308034 tattggaaaaaattcaagttccacatcggatagataa 36307998  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 37781956 - 37781920
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    |||||||||||| ||||||| ||||||||||||||||    
T  37781956 tattgggaaaaactcaagtctcacatcggatagataa 37781920  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 38376723 - 38376759
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    ||||||||||||  |||||||||||||||||||||||    
T  38376723 tattgggaaaaacccaagtcccacatcggatagataa 38376759  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 39268010 - 39268046
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    ||||||||||||  |||||||||||||||||||||||    
T  39268010 tattgggaaaaacccaagtcccacatcggatagataa 39268046  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 39268218 - 39268254
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    ||||||||||||  |||||||||||||||||||||||    
T  39268218 tattgggaaaaacccaagtcccacatcggatagataa 39268254  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 43490368 - 43490332
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    ||||||||||||  |||||||||||||||||||||||    
T  43490368 tattgggaaaaacccaagtcccacatcggatagataa 43490332  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 268
Target Start/End: Complemental strand, 43490578 - 43490542
Alignment:
Q  232 ctctattgggaaaaattcaagtcccacatcggataga 268  Q
    |||||||||||||||  ||||||||||||||||||||    
T  43490578 ctctattgggaaaaacccaagtcccacatcggataga 43490542  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 5325038 - 5325002
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    |||||||||||||||||||||||||||||||| ||||    
T  5325038 tattgggaaaaattcaagtcccacatcggataaataa 5325002  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 242 - 272
Target Start/End: Complemental strand, 42844920 - 42844890
Alignment:
Q  242 aaaaattcaagtcccacatcggatagataat 272  Q
    |||||||||||||||||||||||||||||||    
T  42844920 aaaaattcaagtcccacatcggatagataat 42844890  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 268
Target Start/End: Original strand, 12314570 - 12314603
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggataga 268  Q
    ||||||||||||| ||||||||||||||||||||    
T  12314570 tattgggaaaaatccaagtcccacatcggataga 12314603  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 271
Target Start/End: Complemental strand, 52846962 - 52846925
Alignment:
Q  234 ctattgggaaaaattcaagtcccacatcggatagataa 271  Q
    |||||||||||||  |||||||||||||||||||||||    
T  52846962 ctattgggaaaaacccaagtcccacatcggatagataa 52846925  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 15392017 - 15392053
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    ||||||||||||  |||||||||||||||||||||||    
T  15392017 tattgggaaaaacccaagtcccacatcggatagataa 15392053  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 21428170 - 21428134
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    ||||||||||||||||||||| |||| ||||||||||    
T  21428170 tattgggaaaaattcaagtcctacattggatagataa 21428134  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 39649196 - 39649160
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    ||||||||||||  |||||||||||||||||||||||    
T  39649196 tattgggaaaaacccaagtcccacatcggatagataa 39649160  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 47377827 - 47377863
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    |||||||||||| ||| ||||||||||||||||||||    
T  47377827 tattgggaaaaactcatgtcccacatcggatagataa 47377863  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 268
Target Start/End: Complemental strand, 15101223 - 15101190
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggataga 268  Q
    ||||||||||||| ||||||||||||||||||||    
T  15101223 tattgggaaaaatccaagtcccacatcggataga 15101190  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 271
Target Start/End: Original strand, 25998808 - 25998845
Alignment:
Q  234 ctattgggaaaaattcaagtcccacatcggatagataa 271  Q
    |||||||||||||  |||||||||||||||||||||||    
T  25998808 ctattgggaaaaacccaagtcccacatcggatagataa 25998845  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 271
Target Start/End: Original strand, 26098333 - 26098370
Alignment:
Q  234 ctattgggaaaaattcaagtcccacatcggatagataa 271  Q
    |||||||||||||  |||||||||||||||||||||||    
T  26098333 ctattgggaaaaacccaagtcccacatcggatagataa 26098370  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 6623537 - 6623501
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    ||||||||||||  |||||||||||||||||||||||    
T  6623537 tattgggaaaaacccaagtcccacatcggatagataa 6623501  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 269
Target Start/End: Original strand, 11316833 - 11316869
Alignment:
Q  233 tctattgggaaaaattcaagtcccacatcggatagat 269  Q
    |||||||||||||| |||||| |||||||||||||||    
T  11316833 tctattgggaaaaactcaagttccacatcggatagat 11316869  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 13692280 - 13692244
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    |||||||||||| ||||||| ||||||||||||||||    
T  13692280 tattgggaaaaactcaagtctcacatcggatagataa 13692244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 24558575 - 24558611
Alignment:
Q  235 tattgggaaaaattcaagtcccacatcggatagataa 271  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  24558575 tattgggaaaaatccaagtcccacatcagatagataa 24558611  T

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Target: scaffold0434 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 268
Target Start/End: Original strand, 13295 - 13331
Alignment:
Q  232 ctctattgggaaaaattcaagtcccacatcggataga 268  Q
    ||||||||||||||| ||| |||||||||||||||||    
T  13295 ctctattgggaaaaactcaggtcccacatcggataga 13331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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