View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5255_low_33 (Length: 274)
Name: NF5255_low_33
Description: NF5255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5255_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 39299682 - 39299905
Alignment:
| Q |
1 |
ctttcacatgtggtgttccagaaaccactttggttcggctatcaagtttttctctatcatctgttaaaccttttgattccatttgaaactttcccacatc |
100 |
Q |
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| T |
39299682 |
ctttcacatgtggtgttccagaaaccactttggttcggctatcaagtttttctctatcatcggttaaaccttttgattccatttgaaactttcccacatc |
39299781 |
T |
|
| Q |
101 |
acgaaaaccaccaaaatcttcttttccacctactctgtttcctgctacatttgcactatcacgaacatgtgcacgatcaaggtaactttgattctcgtta |
200 |
Q |
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||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39299782 |
acgaacaccaccaaaatcttct---------------tttcctgctacatttgcactatcacgaacatgtgcacgatcaaggtaactttgattctcgtta |
39299866 |
T |
|
| Q |
201 |
cgatcaggaagagactgaaagtttgaaccaagttcatgg |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
39299867 |
cgatcaggaagagactgaaagtttgaaccaagttcatgg |
39299905 |
T |
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