View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5255_low_35 (Length: 269)
Name: NF5255_low_35
Description: NF5255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5255_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 138 - 266
Target Start/End: Complemental strand, 8534702 - 8534574
Alignment:
| Q |
138 |
ctggatgaaatgatgaagaaagaacctgagttgaatagagtgactgagcgcgtcaaccagaatgacacagccacattactctactcatcaggaacaacag |
237 |
Q |
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| T |
8534702 |
ctggatgaaatgatgaagaaagaacctgagttgagtagagtgactgagcgcgtcaaccagaatgacacagccacattactctactcatcaggaacaacag |
8534603 |
T |
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| Q |
238 |
gaccaagcaaaggagtattatctacccac |
266 |
Q |
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| T |
8534602 |
gaccaagcaaaggagtagtatcttcccac |
8534574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 138 - 266
Target Start/End: Complemental strand, 8599941 - 8599813
Alignment:
| Q |
138 |
ctggatgaaatgatgaagaaagaacctgagttgaatagagtgactgagcgcgtcaaccagaatgacacagccacattactctactcatcaggaacaacag |
237 |
Q |
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| T |
8599941 |
ctggatgaaatgatgaagaaagaacctgagttgagtagagtgactgagcgcgtcaaccagaatgacacagccacattactctactcatcaggaacaacag |
8599842 |
T |
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| Q |
238 |
gaccaagcaaaggagtattatctacccac |
266 |
Q |
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| T |
8599841 |
gaccaagcaaaggagtagtatcttcccac |
8599813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 138 - 266
Target Start/End: Original strand, 8613485 - 8613613
Alignment:
| Q |
138 |
ctggatgaaatgatgaagaaagaacctgagttgaatagagtgactgagcgcgtcaaccagaatgacacagccacattactctactcatcaggaacaacag |
237 |
Q |
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| T |
8613485 |
ctggatgaaatgatgaagaaagaacctgagttgagtagagtgactgagcgcgtcaaccagaatgacacagccacattactctactcatcaggaacaacag |
8613584 |
T |
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| Q |
238 |
gaccaagcaaaggagtattatctacccac |
266 |
Q |
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| T |
8613585 |
gaccaagcaaaggagtagtatcttcccac |
8613613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 8534845 - 8534752
Alignment:
| Q |
1 |
ctgattccaaacctgttcttgctttcactactcaacaactcctttccaaaatcacacaagcatcacctttacttccaatcattctcatggacac |
94 |
Q |
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| T |
8534845 |
ctgattccaaacctgttcttgctttcactactcaacaactcctttccaaaatcacccaagcatcaccttcacttccaatcattctcatggacac |
8534752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 8600084 - 8599991
Alignment:
| Q |
1 |
ctgattccaaacctgttcttgctttcactactcaacaactcctttccaaaatcacacaagcatcacctttacttccaatcattctcatggacac |
94 |
Q |
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| T |
8600084 |
ctgattccaaacctgttcttgctttcactactcaacaactcctttccaaaatcacccaagcatcaccttcacttccaatcattctcatggacac |
8599991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 8613342 - 8613435
Alignment:
| Q |
1 |
ctgattccaaacctgttcttgctttcactactcaacaactcctttccaaaatcacacaagcatcacctttacttccaatcattctcatggacac |
94 |
Q |
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| T |
8613342 |
ctgattccaaacctgttcttgctttcactactcaacaactcctttccaaaatcacccaagcatcaccttcacttccaatcattctcatggacac |
8613435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 8548103 - 8548141
Alignment:
| Q |
1 |
ctgattccaaacctgttcttgctttcactactcaacaac |
39 |
Q |
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| T |
8548103 |
ctgattccaaacctgttcttgctttcactactcaacaac |
8548141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 260
Target Start/End: Complemental strand, 14752292 - 14752233
Alignment:
| Q |
201 |
gacacagccacattactctactcatcaggaacaacaggaccaagcaaaggagtattatct |
260 |
Q |
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|||||||| || ||||||||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
14752292 |
gacacagctactctactctactcatctggaacaacaggaccaagcaaaggagtagtatct |
14752233 |
T |
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