View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5255_low_37 (Length: 265)
Name: NF5255_low_37
Description: NF5255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5255_low_37 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 8 - 259
Target Start/End: Complemental strand, 37893147 - 37892896
Alignment:
| Q |
8 |
tgaaatgaaatatggggttatgttacgtatatatacacattgatgggttgtattttcttccaatttagttcttccttttcgtgtaaggattgatttatgt |
107 |
Q |
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| T |
37893147 |
tgaaatgaaatatggggttatgttacgtatatatacacattgatgggttatattttcttccaatttagttcttccttttcgtgtaaggattgatttatgt |
37893048 |
T |
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| Q |
108 |
caaggaaaatctcaaattgggtttccctgtaacaaaatatgtctctaaagaataccttacttatttgctaggcattgtttagtcacgttctttctccaca |
207 |
Q |
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| T |
37893047 |
caaggaaaatctcaaattgggtttccctgtaacaaaatatgtctctaaagaataccttacttatttgctaggcattgtttagtcacgttctttctccaca |
37892948 |
T |
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| Q |
208 |
tgcatgtaatattgattaagtttgtgcaaagttaaggatttaatttccaact |
259 |
Q |
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| T |
37892947 |
tgcatgtaatattgattaagtttgtgcaaagttaaggatttaatttccaact |
37892896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 8 - 265
Target Start/End: Complemental strand, 37188250 - 37187993
Alignment:
| Q |
8 |
tgaaatgaaatatggggttatgttacgtatatatacacattgatgggttgtattttcttccaatttagttcttccttttcgtgtaaggattgatttatgt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37188250 |
tgaaatgaaatatggggttatgttacgtatatatacacattgatgggttgtattttcttccaatttagttcttccttttcgtgtaaggattgatttatgt |
37188151 |
T |
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| Q |
108 |
caaggaaaatctcaaattgggtttccctgtaacaaaatatgtctctaaagaataccttacttatttgctaggcattgtttagtcacgttctttctccaca |
207 |
Q |
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| T |
37188150 |
caaggaaaatctcaaattgggtttccctgtaacaaaatatgtctctaaagaataccttacttatttgctaggcattgttgagtaacgttctttccccaca |
37188051 |
T |
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| Q |
208 |
tgcatgtaatattgattaagtttgtgcaaagttaaggatttaatttccaactgttctt |
265 |
Q |
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| T |
37188050 |
tgcatgtaatattgattaagtttgtgcaaagttgaggatttaatttccaactgttctt |
37187993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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