View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5255_low_39 (Length: 262)
Name: NF5255_low_39
Description: NF5255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5255_low_39 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 2 - 245
Target Start/End: Complemental strand, 36457866 - 36457623
Alignment:
| Q |
2 |
tataacattctaaatagcataagctccagccgcagaatgtcatttgcggtctgctacctattttcgatgacatccatttccaactaagagattgaacaca |
101 |
Q |
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| T |
36457866 |
tataacattctaaatagcataaactccagccagagaatgtcattttcggtctgctacctattttcgacgacattcatttccaactaagagattgaacaca |
36457767 |
T |
|
| Q |
102 |
ttaggaatactgtccataaaaattatattatttctagcaatccatagagatcaaacaaccgctcaccacaacaacagaccgagcgagccttttgtttttc |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36457766 |
ttaggaatactgtccataaaaattatattatttctagcaatccatagagaccaaacaaccgctcaccacaacaacagaccgagcgagccttttgtttttc |
36457667 |
T |
|
| Q |
202 |
actccccataaagacacattatgctgcagcagatgaaccacagg |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36457666 |
actccccataaagacacattatgctgcagcagatgaaccacagg |
36457623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 98 - 177
Target Start/End: Original strand, 11628377 - 11628456
Alignment:
| Q |
98 |
cacattaggaatactgtccataaaaattatattatttctagcaatccatagagatcaaacaaccgctcaccacaacaaca |
177 |
Q |
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|||||||| |||| ||||||||||||||||||||||||||||||| ||||||| ||||||||| ||| | ||||||||| |
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| T |
11628377 |
cacattagaaatattgtccataaaaattatattatttctagcaatatatagagaccaaacaacctctcccaacaacaaca |
11628456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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