View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5255_low_4 (Length: 477)
Name: NF5255_low_4
Description: NF5255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5255_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 445; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 16 - 468
Target Start/End: Original strand, 41890230 - 41890682
Alignment:
| Q |
16 |
aattgcaacatcattcactttaggtatagaaactataagtggatgaatcagcaataatgttcctcaagccaccaactgttgatgccagcataatacatac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41890230 |
aattgcaacatcattcactttaggtatagaaactataagtggatgaatcagcaataatgttcctcaagccaccaactgttgatgccagcataatacatac |
41890329 |
T |
|
| Q |
116 |
acctatgtaaattccagcctgaaataaaagacacaaattgataatcaatacattgataaaacaagtcttaaatttctttggtttcttgattcattaccca |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41890330 |
acctatgtaaattccagcctgaaataaaagacacaaattgataatcaatacattgagaaaacaagtcttaaatttctttggtttcttgattcattaccca |
41890429 |
T |
|
| Q |
216 |
attgatgaaccagttgatgctgaatttctttggtttcttgattatcatccacattatgctaggaagctgaaacaattaacaagccaataattgacttttt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41890430 |
attgatgaaccagttgatgctgaatttctttggtttcttgattatcatccacattatgctaggaagctgaaacaattaacaagccaataattgacttttt |
41890529 |
T |
|
| Q |
316 |
agtttcagaatcaattcatcttaaattgacaatttgacataagaatagagaggacaagagagccttacaaaatatgaagtgggagcaaaaccaaatccac |
415 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41890530 |
agtttcagaatcaattcattttaaattgacaatttgacataagaatagagaggacaagagagccttacaaaatatgaagtgggagcaaaaccaaatccac |
41890629 |
T |
|
| Q |
416 |
caaagaatccaagaagatcaccaaagaatggaaaagtgactccaaagaataat |
468 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41890630 |
caaagaatccaagaagatcaccaaagaatggaaaagtgactccaaagaataat |
41890682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 206 - 468
Target Start/End: Original strand, 41896022 - 41896294
Alignment:
| Q |
206 |
tcattacccaattgatgaaccagttgatgctgaatttctttggtttcttgattatcatccacattatgctaggaagctgaaacaattaacaagccaataa |
305 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||| || |||| ||||||||||||| ||||||||| |||||||||||||| |||| ||||| ||||| |
|
|
| T |
41896022 |
tcattacccaattgatgaaccaattgatactgaatctccttggcttcttgattatcaaccacattatactaggaagctgaaataattcacaagaaaataa |
41896121 |
T |
|
| Q |
306 |
ttgactttttagtttcagaatcaattcatcttaaa--ttgacaatttgacataagaatagaga--------ggacaagagagccttacaaaatatgaagt |
395 |
Q |
| |
|
|| | |||| ||| | ||| ||||||| | ||| |||||||||||||||||| ||||||| ||||||||| |||||||||||||||| || |
|
|
| T |
41896122 |
ttcatcttttgattttataattaattcatttaaaaatttgacaatttgacataagcatagagaaattgagaggacaagagtgccttacaaaatatgacgt |
41896221 |
T |
|
| Q |
396 |
gggagcaaaaccaaatccaccaaagaatccaagaagatcaccaaagaatggaaaagtgactccaaagaataat |
468 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||||||| |||||| | || ||||| |||||| |
|
|
| T |
41896222 |
gggagcaaaaccaaatccaccaaagaacccaagaagatctccaaagaaaggaaaactcaccccaaataataat |
41896294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 41895787 - 41895917
Alignment:
| Q |
16 |
aattgcaacatcattcactttaggtatagaaactataagtggatgaatcagcaataatgttcctcaagccaccaactgttgatgccagcataatacatac |
115 |
Q |
| |
|
||||| |||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||| ||||||||| || |
|
|
| T |
41895787 |
aattgtaacatcatgcactttaggtataaaaactataagtggatgaatcaacaataatgttcctcaagccaccaattgtagatgccaacataatacacac |
41895886 |
T |
|
| Q |
116 |
acctatgtaaattccagcctgaaataaaaga |
146 |
Q |
| |
|
||||||| ||||| || |||||||| ||||| |
|
|
| T |
41895887 |
acctatgcaaattgcaacctgaaatgaaaga |
41895917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 209 - 292
Target Start/End: Complemental strand, 22552153 - 22552070
Alignment:
| Q |
209 |
ttacccaattgatgaaccagttgatgctgaatttctttggtttcttgattatcatccacattatgctaggaagctgaaacaatt |
292 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||| ||||||||||||||||||| | ||||||||| ||||||||||||||||||| |
|
|
| T |
22552153 |
ttacccaatttatgaaccagttgatgctaaatctctttggtttcttgattattagccacattatactaggaagctgaaacaatt |
22552070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 379 - 443
Target Start/End: Complemental strand, 22551974 - 22551910
Alignment:
| Q |
379 |
cttacaaaatatgaagtgggagcaaaaccaaatccaccaaagaatccaagaagatcaccaaagaa |
443 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
22551974 |
cttacaaaatatgaagtgggagcaaaaccaaatccaccaaagaagccaagaagatcgccaaagaa |
22551910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 34 - 140
Target Start/End: Complemental strand, 22552317 - 22552211
Alignment:
| Q |
34 |
tttaggtatagaaactataagtggatgaatcagcaataatgttcctcaagccaccaactgttgatgccagcataatacatacacctatgtaaattccagc |
133 |
Q |
| |
|
||||||| ||||| ||||| | |||||||||||||| || ||||| |||||||||| || |||||||||||||| || ||||| ||||| || |||| |
|
|
| T |
22552317 |
tttaggtgtagaagctatatgatgatgaatcagcaatgatattcctgaagccaccaatagtggatgccagcataatgcacacaccaatgtatatggcagc |
22552218 |
T |
|
| Q |
134 |
ctgaaat |
140 |
Q |
| |
|
||||||| |
|
|
| T |
22552217 |
ctgaaat |
22552211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 446
Target Start/End: Complemental strand, 43855252 - 43855185
Alignment:
| Q |
379 |
cttacaaaatatgaagtgggagcaaaaccaaatccaccaaagaatccaagaagatcaccaaagaatgg |
446 |
Q |
| |
|
||||||||||||| ||||||||||| | ||||| ||||| |||||||| ||| ||||||||||||| |
|
|
| T |
43855252 |
cttacaaaatatgttgtgggagcaaatgccaatcctccaaaaaatccaaggagagcaccaaagaatgg |
43855185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University