View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5255_low_42 (Length: 258)
Name: NF5255_low_42
Description: NF5255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5255_low_42 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 38850865 - 38850625
Alignment:
| Q |
1 |
acttatatttgtttgactgctcattttgttgacgcgaattggaagttaaatagtaaggttatcaatttccgtcttgtttatcctcctactagtggggaga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38850865 |
acttatatttgtttgactgctcattttgttgacgcgaattggaagttaaatagtaaggttatcaatttccgtcttgtttatcctcctactagtggggaga |
38850766 |
T |
|
| Q |
101 |
tttgtgagagaatggttgagttgttgaatgattggggaatagagaaaaagattttctctctcactattgatgattcatctgagaatgagattttgcaaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38850765 |
tttgtgagagaatggttgagttgttgaatgattggggaatagagaaaaagattttctctctcactattgatgattcatctgagaatgagattttgcaaga |
38850666 |
T |
|
| Q |
201 |
acaattgaaaactcaacttgttttgcaaaatggtttgttat |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38850665 |
acaattgaaaactcaacttgttttgcaaaatggtttgttat |
38850625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 153; Significance: 3e-81; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 38313071 - 38313311
Alignment:
| Q |
1 |
acttatatttgtttgactgctcattttgttgacgcgaattggaagttaaatagtaaggttatcaatttccgtcttgtttatcctcctactagtggggaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||| |||| ||| |||||||||| ||||||||| | | |||| |
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| T |
38313071 |
acttatatttgtttgactgctcatttcgttgatgcgaattggaagttaaatagtaaagttctcaacttctgtcttgtttaccctcctactggagctgaga |
38313170 |
T |
|
| Q |
101 |
tttgtgagagaatggttgagttgttgaatgattggggaatagagaaaaagattttctctctcactattgatgattcatctgagaatgagattttgcaaga |
200 |
Q |
| |
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| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||| |
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|
| T |
38313171 |
tgtgtgagagaatggttgagtttttgagtgattggggaatagagaaaaagattttctctctcactttagatgattcatctgagaatgacattttgcaaga |
38313270 |
T |
|
| Q |
201 |
acaattgaaaactcaacttgttttgcaaaatggtttgttat |
241 |
Q |
| |
|
|||||| |||| ||||||| |||||||||||| ||||||| |
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|
| T |
38313271 |
acaattaaaaaatcaactttgtttgcaaaatgggttgttat |
38313311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 38316480 - 38316720
Alignment:
| Q |
1 |
acttatatttgtttgactgctcattttgttgacgcgaattggaagttaaatagtaaggttatcaatttccgtcttgtttatcctcctactagtggggaga |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||| || ||||||||||| ||||||| | | ||||| |
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|
| T |
38316480 |
acttatatttgtttgacagctcattttgttgacgcgaattggaagttgaatagtaaggttctcaactttcgtcttgtttaccctcctattgcagcggaga |
38316579 |
T |
|
| Q |
101 |
tttgtgagagaatggttgagttgttgaatgattggggaatagagaaaaagattttctctctcactattgatgattcatctgagaatgagattttgcaaga |
200 |
Q |
| |
|
||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||| | || ||| ||| |
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|
| T |
38316580 |
tttcggagagaatgattgaattgttgaatgattggggaatagagaaaaagattttctctctcactttagatgattcatttgagaataatgttatgctaga |
38316679 |
T |
|
| Q |
201 |
acaattgaaaactcaacttgttttgcaaaatggtttgttat |
241 |
Q |
| |
|
||||||||||| ||||||| ||||| |||||| ||||||| |
|
|
| T |
38316680 |
acaattgaaaaatcaactttgtttgcgaaatgggttgttat |
38316720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 38320578 - 38320815
Alignment:
| Q |
1 |
acttatatttgtttgactgctcattttgttgacgcgaattggaagttaaatagtaaggttatcaatttccgtcttgtttatcctcctactagtggggaga |
100 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||||||||| ||||| ||||||||| ||| ||| || |||| |||| ||| | | |||| |
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|
| T |
38320578 |
acttatatttgtttgaccgctcattttgctgacgcgaattggaaattaaagagtaaggttctcaccttctgtactgttgatccc---actggagctgaga |
38320674 |
T |
|
| Q |
101 |
tttgtgagagaatggttgagttgttgaatgattggggaatagagaaaaagattttctctctcactattgatgattcatctgagaatgagattttgcaaga |
200 |
Q |
| |
|
| |||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||| ||||||||||| |
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|
| T |
38320675 |
tgtgtgagagaatggttgagtttttgagtgattggggaatagagaaaaagatcttctctctcactttagatgattcatctgagaatgacattttgcaaga |
38320774 |
T |
|
| Q |
201 |
acaattgaaaactcaacttgttttgcaaaatggtttgttat |
241 |
Q |
| |
|
|| ||||||||||||||||| |||||||||||| ||||||| |
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|
| T |
38320775 |
actattgaaaactcaacttggtttgcaaaatgggttgttat |
38320815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 38299833 - 38300070
Alignment:
| Q |
1 |
acttatatttgtttgactgctcattttgttgacgcgaattggaagttaaatagtaaggttatcaatttccgtcttgtttatcctcctactagtggggaga |
100 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||| | |||||| ||||||||| || || || ||| |
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|
| T |
38299833 |
acttatatctgtttgaccgctcattttgttgacgcggattggaagttaaatagtaaggttcttaatttctgtcttgttttacccactgtatctg---aga |
38299929 |
T |
|
| Q |
101 |
tttgtgagagaatggttgagttgttgaatgattggggaatagagaaaaagattttctctctcactattgatgattcatctgagaatgagattttgcaaga |
200 |
Q |
| |
|
| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| | || ||||||| | ||||| | ||||||||||| |
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|
| T |
38299930 |
tgtgtgagagaatggttgagttcttgaatgattggggaatagaggaaaagattttctctctcactttagaagattcatttaagaataaaattttgcaaga |
38300029 |
T |
|
| Q |
201 |
acaattgaaaactcaacttgttttgcaaaatggtttgttat |
241 |
Q |
| |
|
| |||| ||| ||||||||||||||| ||||| ||||||| |
|
|
| T |
38300030 |
aaaatttcaaaatcaacttgttttgcataatgggttgttat |
38300070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 2 - 239
Target Start/End: Original strand, 38325326 - 38325563
Alignment:
| Q |
2 |
cttatatttgtttgactgctcattttgttgacgcgaattggaagttaaatagtaaggttatcaatttccgtcttgtttatcctcctactagtggggagat |
101 |
Q |
| |
|
|||| |||||| |||| ||||||||||||||||||||||||||| |||||||||||||| |||||||| || ||| || ||| ||| |||| ||||| |
|
|
| T |
38325326 |
cttacatttgtctgaccgctcattttgttgacgcgaattggaaggtaaatagtaaggttctcaatttctgtagtgtctaccctgacactggtggtgagat |
38325425 |
T |
|
| Q |
102 |
ttgtgagagaatggttgagttgttgaatgattggggaatagagaaaaagattttctctctcactattgatgattcatctgagaatgagattttgcaagaa |
201 |
Q |
| |
|
||||| |||||| |||| ||||||||||||||||||||||||||||||||||| ||||| ||| | ||||||||| |||||| | || | |||||| |
|
|
| T |
38325426 |
gtgtgaaagaatgattgaattgttgaatgattggggaatagagaaaaagattttttctcttactttagatgattcagtcgagaataatgttctacaagaa |
38325525 |
T |
|
| Q |
202 |
caattgaaaactcaacttgttttgcaaaatggtttgtt |
239 |
Q |
| |
|
||||||||| |||| |||| |||||||||||| ||||| |
|
|
| T |
38325526 |
caattgaaatctcatcttggtttgcaaaatgggttgtt |
38325563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 38305752 - 38305989
Alignment:
| Q |
1 |
acttatatttgtttgactgctcattttgttgacgcgaattggaagttaaatagtaaggttatcaatttccgtcttgtttatcctcctactagtggggaga |
100 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||| ||| || |||||| || ||| | |||| |
|
|
| T |
38305752 |
acttatatctgtttgactgcgcattttgttgacgcggattggaagttaaatagtaaggttctcaacttctgtgttgttttaccc---actgtagccgaga |
38305848 |
T |
|
| Q |
101 |
tttgtgagagaatggttgagttgttgaatgattggggaatagagaaaaagattttctctctcactattgatgattcatctgagaatgagattttgcaaga |
200 |
Q |
| |
|
| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| | | || || |||| | || | | ||||||||||| |
|
|
| T |
38305849 |
tgtgtgagagaatggttgagtttttgagtgattggggaatagagaaaaagattttctctctcaatttagaggactcatttaaggacaacattttgcaaga |
38305948 |
T |
|
| Q |
201 |
acaattgaaaactcaacttgttttgcaaaatggtttgttat |
241 |
Q |
| |
|
||| |||||| |||| |||| |||| ||||||||||||||| |
|
|
| T |
38305949 |
acagttgaaatctcatcttggtttggaaaatggtttgttat |
38305989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 38308485 - 38308717
Alignment:
| Q |
1 |
acttatatttgtttgactgctcattttgttgacgcgaattggaagttaaatagtaaggttatcaatttccgtcttgtttatcctcctactagtggggaga |
100 |
Q |
| |
|
|||||||||||||| | ||||||||||||| |||| |||||||||||||||||||| || |||||||| ||||||||| ||||||||| | | | | |
|
|
| T |
38308485 |
acttatatttgtttatccgctcattttgttggcgcggattggaagttaaatagtaagcttttcaatttctgtcttgttttccctcctactggagcctata |
38308584 |
T |
|
| Q |
101 |
tttgtgagagaatggttgagttgttgaatgattggggaatagagaaaaagattttctctctcactattgatgattcatctgagaatgagattttgcaaga |
200 |
Q |
| |
|
| |||||||||||||||| |||||||||||| |||||||||||||||| || | ||| | |||||||||| ||||||| | || ||||| | |
|
|
| T |
38308585 |
tgtgtgagagaatggttg--------aatgattggggagtagagaaaaagattttttcatttactttagatgattcatttgagaataatgttctgcaaca |
38308676 |
T |
|
| Q |
201 |
acaattgaaaactcaacttgttttgcaaaatggtttgttat |
241 |
Q |
| |
|
||||||||| |||||||||| |||| ||||||| ||||||| |
|
|
| T |
38308677 |
acaattgaagactcaacttggtttggaaaatgggttgttat |
38308717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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