View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5255_low_44 (Length: 255)
Name: NF5255_low_44
Description: NF5255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5255_low_44 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 37892408 - 37892648
Alignment:
| Q |
18 |
caggacttaccttcaaattgtagttcaaattatgtttggttaggttttttagagttt-------agggtttagacggaacgatttctttattcttacaga |
110 |
Q |
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| T |
37892408 |
caggacttaccttcaaattgtagttcaaattatgtttggttagtttttttagagtttagggtttagggtttagaccggacgatttctttattcttacaga |
37892507 |
T |
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| Q |
111 |
tgtcaaagtttggtagctcaaacctcttaccattagaacttgtttggtagtcaagatacgataatgatggtatataatagttctatcttgttttaattta |
210 |
Q |
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| T |
37892508 |
tgtcaaagtttggtagctcaaacctcttaccattagaacttgtttggtagtcaagataagataatgatggtatataatagttctatcttgttttaattta |
37892607 |
T |
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| Q |
211 |
tgatttaatttaatgacgcatgaacatgatattgatcatat |
251 |
Q |
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| T |
37892608 |
taatttaatttaatgacgcatgaacatgatattgatcatat |
37892648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 108 - 219
Target Start/End: Original strand, 37187575 - 37187689
Alignment:
| Q |
108 |
agatgtcaaagtttggtagctcaaacctcttaccattagaacttgtttggtagtcaagatacgataatga---tggtatataatagttctatcttgtttt |
204 |
Q |
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||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||| | | |||||||||||||||||| |||||| |
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| T |
37187575 |
agatgtcaaagttggacagctcaaacctcttaccattagaacttgtttggtagtcaagataagataattatagttgtatataatagttctatcatgtttt |
37187674 |
T |
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| Q |
205 |
aatttatgatttaat |
219 |
Q |
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| T |
37187675 |
agtttataatttaat |
37187689 |
T |
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