View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5255_low_49 (Length: 246)
Name: NF5255_low_49
Description: NF5255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5255_low_49 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 16 - 231
Target Start/End: Original strand, 33500676 - 33500891
Alignment:
| Q |
16 |
aattctatcttaaaagaatagttttgtaatcatcatttacaaggaaaagaaaattttaacaagaaattataccttgtcagccttggaaataagtatagac |
115 |
Q |
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| T |
33500676 |
aattctatcttaaaacaatagttttgtaatcatcatttacaaggaaaagaaaattttaacaagaaattataccttgtcagccttggaaataagtatagac |
33500775 |
T |
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| Q |
116 |
catatctttaacattgctatgtttgctatctgcatcatctcatgtacagtgtacaatccatgttgggctgagacaatgctatccattgtagatttatcag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33500776 |
catatctttaacattgctatgtttgctatctgcatcatctcatgtacagtgtacaatccatgttgggctgagacaatgctatccattgtagatttatcag |
33500875 |
T |
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| Q |
216 |
aagccatattagatct |
231 |
Q |
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|||||||||||||||| |
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| T |
33500876 |
aagccatattagatct |
33500891 |
T |
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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 85 - 179
Target Start/End: Original strand, 55867765 - 55867859
Alignment:
| Q |
85 |
taccttgtcagccttggaaataagtatagaccatatctttaacattgctatgtttgctatctgcatcatctcatgtacagtgtacaatccatgtt |
179 |
Q |
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| T |
55867765 |
taccttgtcagacttgaaaatatgtacagatcatatctttcacattgctatatttgatctctgcatcatctcatgaacagtgaacaatccttgtt |
55867859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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