View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5255_low_52 (Length: 238)
Name: NF5255_low_52
Description: NF5255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5255_low_52 |
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Alignment Details
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 21 - 173
Target Start/End: Complemental strand, 43258303 - 43258150
Alignment:
| Q |
21 |
gtacaataatgctagttattcgacatgtgatgtagcgaaattttcaagaaagggctattgcagcactaaatatattttcttaattataacaatgtccttc |
120 |
Q |
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| T |
43258303 |
gtacaataatgctaattattcgacatgtgatgtagcgaaattttcaagaaagggctattgcagcacttaatatattttcttaattataacaatgtccttc |
43258204 |
T |
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| Q |
121 |
cgtgttttgtggcaataatataattatatatttgtaaacctgtc-gtgatccct |
173 |
Q |
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| T |
43258203 |
cgtgttttgtggcaataacataattatatagttgtaaacctgtcagtgatccct |
43258150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 214
Target Start/End: Complemental strand, 43258150 - 43258121
Alignment:
| Q |
185 |
tctctcgggagcaatagcaatggtcttttt |
214 |
Q |
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| T |
43258150 |
tctctcgggagcaatagcaatggtcttttt |
43258121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 50 - 134
Target Start/End: Original strand, 47515580 - 47515662
Alignment:
| Q |
50 |
atgtagcgaaattttcaagaaagggctattgcagcactaaatatattttcttaattataacaatgtccttccgtgttttgtggca |
134 |
Q |
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| T |
47515580 |
atgtagcaaaattttcacgaaagg-ctatttt-gcactaaatatattttcttaattgtaacaatgccctcccttgttttgtggca |
47515662 |
T |
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