View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5255_low_54 (Length: 237)

Name: NF5255_low_54
Description: NF5255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5255_low_54
NF5255_low_54
[»] chr8 (6 HSPs)
chr8 (107-221)||(37811206-37811320)
chr8 (18-79)||(13579123-13579183)
chr8 (19-80)||(13579752-13579812)
chr8 (16-80)||(10088659-10088724)
chr8 (81-114)||(36697685-36697718)
chr8 (82-114)||(9044190-9044222)
[»] chr1 (7 HSPs)
chr1 (4-80)||(33082502-33082578)
chr1 (8-65)||(23729467-23729524)
chr1 (18-64)||(23729966-23730012)
chr1 (19-80)||(43501194-43501255)
chr1 (107-176)||(15418264-15418334)
chr1 (70-114)||(36391367-36391411)
chr1 (70-114)||(49359631-49359675)
[»] chr3 (12 HSPs)
chr3 (6-80)||(46753247-46753321)
chr3 (18-80)||(46753957-46754019)
chr3 (9-65)||(22243125-22243181)
chr3 (18-65)||(53067749-53067796)
chr3 (104-180)||(16350-16426)
chr3 (70-114)||(29749347-29749391)
chr3 (9-65)||(22242908-22242964)
chr3 (70-114)||(47393885-47393929)
chr3 (70-116)||(20111913-20111959)
chr3 (70-116)||(54524698-54524744)
chr3 (10-66)||(29346397-29346453)
chr3 (18-65)||(53067219-53067267)
[»] chr2 (9 HSPs)
chr2 (10-80)||(23857850-23857920)
chr2 (18-80)||(22482893-22482954)
chr2 (6-82)||(22482184-22482258)
chr2 (10-80)||(23857108-23857178)
chr2 (9-80)||(15285665-15285734)
chr2 (70-114)||(30784868-30784912)
chr2 (70-112)||(6257781-6257823)
chr2 (70-114)||(25616842-25616886)
chr2 (70-108)||(37151906-37151944)
[»] scaffold0017 (1 HSPs)
scaffold0017 (19-65)||(31211-31257)
[»] chr4 (7 HSPs)
chr4 (6-80)||(33931912-33931986)
chr4 (149-219)||(42060377-42060446)
chr4 (108-180)||(42059577-42059649)
chr4 (70-114)||(49574756-49574800)
chr4 (10-66)||(33932661-33932717)
chr4 (82-114)||(43428480-43428512)
chr4 (82-123)||(56531817-56531858)
[»] chr6 (3 HSPs)
chr6 (19-80)||(1956871-1956932)
chr6 (70-116)||(12796040-12796086)
chr6 (70-114)||(32261212-32261256)
[»] chr7 (4 HSPs)
chr7 (5-58)||(22817250-22817303)
chr7 (9-65)||(45648934-45648990)
chr7 (82-114)||(19068469-19068501)
chr7 (70-114)||(43448531-43448575)
[»] chr5 (3 HSPs)
chr5 (29-80)||(13876145-13876196)
chr5 (82-114)||(14098500-14098532)
chr5 (70-113)||(26016226-26016269)
[»] scaffold1370 (1 HSPs)
scaffold1370 (82-116)||(206-240)


Alignment Details
Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 107 - 221
Target Start/End: Original strand, 37811206 - 37811320
Alignment:
Q  107 atgagaggataaaataatggccaataaattaattagatgccggtgattaaaagagaagttaaatgagtcatatgactctcttctctcccaaattcacttg 206  Q
    |||||||||||||||||||||||||  |||||||||||| |  ||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||    
T  37811206 atgagaggataaaataatggccaatggattaattagatgtctatgattaaaagagaagtttaatgagtcatatgactctcttcttacccaaattcacttg 37811305  T
Q  207 ctactcttttcttct 221  Q
    |||||||||||||||    
T  37811306 ctactcttttcttct 37811320  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 13579183 - 13579123
Alignment:
Q  18 gatgctaatgcacaccttctaaaattaaggtgggtgtgtattagcattatccatatatatat 79  Q
    ||||||||||||||||||||||||| || |||||||||||||||||||  ||||||||||||    
T  13579183 gatgctaatgcacaccttctaaaatcaaagtgggtgtgtattagcatt-cccatatatatat 13579123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 13579752 - 13579812
Alignment:
Q  19 atgctaatgcacaccttctaaaattaaggtgggtgtgtattagcattatccatatatatata 80  Q
    |||||||||||||||||||||||| || ||||||||| |||||||||  || ||||||||||    
T  13579752 atgctaatgcacaccttctaaaatcaaagtgggtgtg-attagcattccccgtatatatata 13579812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 10088659 - 10088724
Alignment:
Q  16 atgatgctaatgcacaccttctaaaattaaggtgggtgtgtattagcattatcc-atatatatata 80  Q
    |||||||||||||||| ||||||||| | | ||||||||| |||| ||||| || |||||||||||    
T  10088659 atgatgctaatgcacatcttctaaaaatcaagtgggtgtgcattaacattaccctatatatatata 10088724  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 114
Target Start/End: Original strand, 36697685 - 36697718
Alignment:
Q  81 acattttaaatgagaggactttttaaatgagagg 114  Q
    |||||| |||||||||||||||||||||||||||    
T  36697685 acatttcaaatgagaggactttttaaatgagagg 36697718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 114
Target Start/End: Original strand, 9044190 - 9044222
Alignment:
Q  82 cattttaaatgagaggactttttaaatgagagg 114  Q
    |||||||||||||| ||||||||||||||||||    
T  9044190 cattttaaatgagatgactttttaaatgagagg 9044222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 33082578 - 33082502
Alignment:
Q  4 acaaataggtgcatgatgctaatgcacaccttctaaaattaaggtgggtgtgtattagcattatccatatatatata 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||    
T  33082578 acaaataggtgcatgatgctaatgcacaccttctaaaattaaggtggatgtgtattagcattactcatatatatata 33082502  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 23729524 - 23729467
Alignment:
Q  8 ataggtgcatgatgctaatgcacaccttctaaaattaaggtgggtgtgtattagcatt 65  Q
    ||||||| | ||||||||||||||||||||||||  ||||||||||||||||||||||    
T  23729524 ataggtgtaggatgctaatgcacaccttctaaaacaaaggtgggtgtgtattagcatt 23729467  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 23729966 - 23730012
Alignment:
Q  18 gatgctaatgcacaccttctaaaattaaggtgggtgtgtattagcat 64  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||    
T  23729966 gatgctaatgcacaccttctaaaataaaggtgggtgtgtattcgcat 23730012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 43501194 - 43501255
Alignment:
Q  19 atgctaatgcacaccttctaaaattaaggtgggtgtgtattagcattatccatatatatata 80  Q
    |||||||||||||||||||||  ||  |||||||||||||||||||||  ||||||||||||    
T  43501194 atgctaatgcacaccttctaatttttgggtgggtgtgtattagcattactcatatatatata 43501255  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 176
Target Start/End: Original strand, 15418264 - 15418334
Alignment:
Q  107 atgagaggataaaataatggccaataaattaa-ttagatgccggtgattaaaagagaagttaaatgagtca 176  Q
    |||||||| | |||||||| ||| |||||||| ||||||  | |||||||||||||||||| |||||||||    
T  15418264 atgagagggtgaaataatgaccattaaattaacttagatcgctgtgattaaaagagaagtttaatgagtca 15418334  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 114
Target Start/End: Complemental strand, 36391411 - 36391367
Alignment:
Q  70 atatatatataacattttaaatgagaggactttttaaatgagagg 114  Q
    |||||||||| | |||| ||||||||||||||| |||||||||||    
T  36391411 atatatatatgatatttcaaatgagaggactttataaatgagagg 36391367  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 114
Target Start/End: Original strand, 49359631 - 49359675
Alignment:
Q  70 atatatatataacattttaaatgagaggactttttaaatgagagg 114  Q
    ||||||||| | ||||| ||||||||||| |||||||||||||||    
T  49359631 atatatatagagcatttcaaatgagaggagtttttaaatgagagg 49359675  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 80
Target Start/End: Complemental strand, 46753321 - 46753247
Alignment:
Q  6 aaataggtgcatgatgctaatgcacaccttctaaaattaaggtgggtgtgtattagcattatccatatatatata 80  Q
    ||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||    
T  46753321 aaataggtgtaggatgctaatgcacaccttttaaaattaaggtgggtgtgtattagcatttcccatatatatata 46753247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 46753957 - 46754019
Alignment:
Q  18 gatgctaatgcacaccttctaaaattaaggtgggtgtgtattagcattatccatatatatata 80  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||  | |||||||||||    
T  46753957 gatgctaatgcacactttctaaaattaaggtgggtgtgtattagcattcccgatatatatata 46754019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 22243125 - 22243181
Alignment:
Q  9 taggtgcatgatgctaatgcacaccttctaaaattaaggtgggtgtgtattagcatt 65  Q
    |||||| |||||||||||||||||||||||||||| | |||||||||||||||||||    
T  22243125 taggtgtatgatgctaatgcacaccttctaaaattgaagtgggtgtgtattagcatt 22243181  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 53067749 - 53067796
Alignment:
Q  18 gatgctaatgcacaccttctaaaattaaggtgggtgtgtattagcatt 65  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  53067749 gatgctaatgcacaccttctaaaattatggtgggtgtgtattagcatt 53067796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 180
Target Start/End: Original strand, 16350 - 16426
Alignment:
Q  104 taaatgagaggataaaataatggccaataaattaattagatgccggtgattaaaagagaagttaaatgagtcatatg 180  Q
    ||||||||||||||||||| || ||| |  |||| ||||||| | |||||||||||||||||| ||||||| |||||    
T  16350 taaatgagaggataaaatactgaccattggattagttagatggctgtgattaaaagagaagtttaatgagtgatatg 16426  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 70 - 114
Target Start/End: Complemental strand, 29749391 - 29749347
Alignment:
Q  70 atatatatataacattttaaatgagaggactttttaaatgagagg 114  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||    
T  29749391 atatatatatagcatttcaaatgagaggactttttaaatgagagg 29749347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 22242964 - 22242908
Alignment:
Q  9 taggtgcatgatgctaatgcacaccttctaaaattaaggtgggtgtgtattagcatt 65  Q
    |||||| | |||||||||||||| ||||||||||| | |||||| ||||||||||||    
T  22242964 taggtgtaggatgctaatgcacatcttctaaaattgaagtgggtatgtattagcatt 22242908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 114
Target Start/End: Original strand, 47393885 - 47393929
Alignment:
Q  70 atatatatataacattttaaatgagaggactttttaaatgagagg 114  Q
    |||||||||| |||||| ||||||||||||||| |||||||||||    
T  47393885 atatatatatgacatttcaaatgagaggactttataaatgagagg 47393929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 116
Target Start/End: Complemental strand, 20111959 - 20111913
Alignment:
Q  70 atatatatataacattttaaatgagaggactttttaaatgagaggat 116  Q
    |||||||||| |||||| |||| ||||||||||| ||||||||||||    
T  20111959 atatatatatgacatttcaaataagaggacttttaaaatgagaggat 20111913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 116
Target Start/End: Complemental strand, 54524744 - 54524698
Alignment:
Q  70 atatatatataacattttaaatgagaggactttttaaatgagaggat 116  Q
    |||||||||  |||||| |||||||||||||||| ||||||||||||    
T  54524744 atatatataggacatttcaaatgagaggacttttaaaatgagaggat 54524698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 29346397 - 29346453
Alignment:
Q  10 aggtgcatgatgctaatgcacaccttctaaaattaaggtgggtgtgtattagcatta 66  Q
    ||||| |||||| ||||||||||||||||||||  | |||| |||| ||||||||||    
T  29346397 aggtgtatgatgttaatgcacaccttctaaaatccaagtggatgtgcattagcatta 29346453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 53067267 - 53067219
Alignment:
Q  18 gatgctaatgcacaccttctaaaa-ttaaggtgggtgtgtattagcatt 65  Q
    |||||||||||||||| ||||||| ||| ||||||||||| ||||||||    
T  53067267 gatgctaatgcacaccatctaaaaattatggtgggtgtgtgttagcatt 53067219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 23857850 - 23857920
Alignment:
Q  10 aggtgcatgatgctaatgcacaccttctaaaattaaggtgggtgtgtattagcattatccatatatatata 80  Q
    ||||| |||||||||||||||||||||||||||| | ||||||||| |||||||||| |||||||||||||    
T  23857850 aggtgtatgatgctaatgcacaccttctaaaattcaagtgggtgtgcattagcattacccatatatatata 23857920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 22482893 - 22482954
Alignment:
Q  18 gatgctaatgcacaccttctaaaattaaggtgggtgtgtattagcattatccatatatatata 80  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||    
T  22482893 gatgctaatgcacaccttctaaaattaatgtgggtgtgtattagcatt-cccatatatatata 22482954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 6 - 82
Target Start/End: Complemental strand, 22482258 - 22482184
Alignment:
Q  6 aaataggtgcatgatgctaatgcacaccttctaaaattaaggtgggtgtgtattagcattatccatatatatataac 82  Q
    ||||||||| | ||||||||||||||||||||||||||||| |||||||||||| ||||  ||| ||||||||||||    
T  22482258 aaataggtgtaggatgctaatgcacaccttctaaaattaagatgggtgtgtattggcat--tccctatatatataac 22482184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 23857178 - 23857108
Alignment:
Q  10 aggtgcatgatgctaatgcacaccttctaaaattaaggtgggtgtgtattagcattatccatatatatata 80  Q
    ||||| |||||||||||||||||||| ||||||| | || |||||| |||||||||| |||||||||||||    
T  23857178 aggtgtatgatgctaatgcacaccttttaaaattcaagtaggtgtgcattagcattacccatatatatata 23857108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 15285665 - 15285734
Alignment:
Q  9 taggtgcatgatgctaatgcacaccttctaaaattaaggtgggtgtgtattagcattatccatatatatata 80  Q
    |||||| | ||||||||||||||| |||||||||| | ||||||||||||||||||  ||||||||||||||    
T  15285665 taggtgtaggatgctaatgcacacattctaaaattgaagtgggtgtgtattagcat--tccatatatatata 15285734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 70 - 114
Target Start/End: Original strand, 30784868 - 30784912
Alignment:
Q  70 atatatatataacattttaaatgagaggactttttaaatgagagg 114  Q
    |||||||||| |||||| |||||||||||||||||||||||||||    
T  30784868 atatatatatgacatttcaaatgagaggactttttaaatgagagg 30784912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 112
Target Start/End: Complemental strand, 6257823 - 6257781
Alignment:
Q  70 atatatatataacattttaaatgagaggactttttaaatgaga 112  Q
    |||||||||| |||||| |||||||||||||||||||||||||    
T  6257823 atatatatatgacatttcaaatgagaggactttttaaatgaga 6257781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 114
Target Start/End: Original strand, 25616842 - 25616886
Alignment:
Q  70 atatatatataacattttaaatgagaggactttttaaatgagagg 114  Q
    ||||||||||  ||||| |||||||||||||||||||||||||||    
T  25616842 atatatatatggcatttcaaatgagaggactttttaaatgagagg 25616886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 108
Target Start/End: Original strand, 37151906 - 37151944
Alignment:
Q  70 atatatatataacattttaaatgagaggactttttaaat 108  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  37151906 atatatatatgacatttcaaatgagaggactttttaaat 37151944  T

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Target: scaffold0017 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 31211 - 31257
Alignment:
Q  19 atgctaatgcacaccttctaaaattaaggtgggtgtgtattagcatt 65  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||    
T  31211 atgctaatgcacaccttctaaaattatggtgggtgtgtattagcatt 31257  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 80
Target Start/End: Complemental strand, 33931986 - 33931912
Alignment:
Q  6 aaataggtgcatgatgctaatgcacaccttctaaaattaaggtgggtgtgtattagcattatccatatatatata 80  Q
    ||||||||| |  |||||||| |||||||||||||||| | |||||||||||||||||||| |||| ||||||||    
T  33931986 aaataggtgtaacatgctaatacacaccttctaaaattcatgtgggtgtgtattagcattacccatgtatatata 33931912  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 149 - 219
Target Start/End: Complemental strand, 42060446 - 42060377
Alignment:
Q  149 gtgattaaaagagaagttaaatgagtcatatgactctcttctctcccaaattcacttgctactcttttctt 219  Q
    |||||||||||||||||| | |||||||||||| | ||||||| ||||||||||||| |||||||||||||    
T  42060446 gtgattaaaagagaagttta-tgagtcatatgattttcttctcacccaaattcactttctactcttttctt 42060377  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 108 - 180
Target Start/End: Original strand, 42059577 - 42059649
Alignment:
Q  108 tgagaggataaaataatggccaataaattaattagatgccggtgattaaaagagaagttaaatgagtcatatg 180  Q
    ||||| ||||||||| ||||||||  ||||||||||||   |||||||||||||||||| |||||||||||||    
T  42059577 tgagatgataaaatagtggccaatggattaattagatgaatgtgattaaaagagaagtttaatgagtcatatg 42059649  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 70 - 114
Target Start/End: Complemental strand, 49574800 - 49574756
Alignment:
Q  70 atatatatataacattttaaatgagaggactttttaaatgagagg 114  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||    
T  49574800 atatatatagaacatttcaaatgagaggactttttaaatgagagg 49574756  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 33932661 - 33932717
Alignment:
Q  10 aggtgcatgatgctaatgcacaccttctaaaattaaggtgggtgtgtattagcatta 66  Q
    ||||| |||||||||||||||||||||||||||| |  |||||||  ||||||||||    
T  33932661 aggtgtatgatgctaatgcacaccttctaaaattcaaatgggtgtacattagcatta 33932717  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 114
Target Start/End: Original strand, 43428480 - 43428512
Alignment:
Q  82 cattttaaatgagaggactttttaaatgagagg 114  Q
    |||||||||||||||||||||||||||||||||    
T  43428480 cattttaaatgagaggactttttaaatgagagg 43428512  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 123
Target Start/End: Original strand, 56531817 - 56531858
Alignment:
Q  82 cattttaaatgagaggactttttaaatgagaggataaaataa 123  Q
    ||||| |||| ||||||| |||||||||||||||||||||||    
T  56531817 catttcaaataagaggacattttaaatgagaggataaaataa 56531858  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 1956932 - 1956871
Alignment:
Q  19 atgctaatgcacaccttctaaaattaaggtgggtgtgtattagcattatccatatatatata 80  Q
    |||||||| |||||||||||||||| | |||||||||||||||||||  |||||||||||||    
T  1956932 atgctaatacacaccttctaaaattgaagtgggtgtgtattagcattccccatatatatata 1956871  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 116
Target Start/End: Complemental strand, 12796086 - 12796040
Alignment:
Q  70 atatatatataacattttaaatgagaggactttttaaatgagaggat 116  Q
    ||||||| || |||||||||||| ||| |||||||||||||||||||    
T  12796086 atatatagatgacattttaaatgggagaactttttaaatgagaggat 12796040  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 114
Target Start/End: Complemental strand, 32261256 - 32261212
Alignment:
Q  70 atatatatataacattttaaatgagaggactttttaaatgagagg 114  Q
    ||||||||||  ||||| |||||||| ||||||||||||||||||    
T  32261256 atatatatatggcatttcaaatgagatgactttttaaatgagagg 32261212  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 22817250 - 22817303
Alignment:
Q  5 caaataggtgcatgatgctaatgcacaccttctaaaattaaggtgggtgtgtat 58  Q
    |||||||||| ||||||| |||||||||||||||||||||| ||||||| ||||    
T  22817250 caaataggtgtatgatgccaatgcacaccttctaaaattaaagtgggtgcgtat 22817303  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 45648990 - 45648934
Alignment:
Q  9 taggtgcatgatgctaatgcacaccttctaaaattaaggtgggtgtgtattagcatt 65  Q
    |||||| | ||||||| | |||||||||||||||| | |||||||||||||||||||    
T  45648990 taggtgtaggatgctactacacaccttctaaaattgaagtgggtgtgtattagcatt 45648934  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 114
Target Start/End: Original strand, 19068469 - 19068501
Alignment:
Q  82 cattttaaatgagaggactttttaaatgagagg 114  Q
    ||||| |||||||||||||||||||||||||||    
T  19068469 catttcaaatgagaggactttttaaatgagagg 19068501  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 114
Target Start/End: Complemental strand, 43448575 - 43448531
Alignment:
Q  70 atatatatataacattttaaatgagaggactttttaaatgagagg 114  Q
    |||||||||  |||||| |||||||||||| ||||||||||||||    
T  43448575 atatatataggacatttcaaatgagaggaccttttaaatgagagg 43448531  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 13876145 - 13876196
Alignment:
Q  29 acaccttctaaaattaaggtgggtgtgtattagcattatccatatatatata 80  Q
    ||||||||||||||| | ||||||||| |||| |||||||||||||||||||    
T  13876145 acaccttctaaaattcaagtgggtgtgcattaccattatccatatatatata 13876196  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 114
Target Start/End: Original strand, 14098500 - 14098532
Alignment:
Q  82 cattttaaatgagaggactttttaaatgagagg 114  Q
    |||||||||||||||||||||||||||||||||    
T  14098500 cattttaaatgagaggactttttaaatgagagg 14098532  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 113
Target Start/End: Complemental strand, 26016269 - 26016226
Alignment:
Q  70 atatatatataacattttaaatgagaggactttttaaatgagag 113  Q
    ||||||||||  ||||| ||||||||||||||||||||||||||    
T  26016269 atatatatatggcatttcaaatgagaggactttttaaatgagag 26016226  T

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Target: scaffold1370 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1370
Description:

Target: scaffold1370; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 116
Target Start/End: Original strand, 206 - 240
Alignment:
Q  82 cattttaaatgagaggactttttaaatgagaggat 116  Q
    ||||| |||||||||||||||||||||||||||||    
T  206 catttcaaatgagaggactttttaaatgagaggat 240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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