View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5255_low_60 (Length: 205)
Name: NF5255_low_60
Description: NF5255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5255_low_60 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 144; Significance: 6e-76; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 6e-76
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 928567 - 928767
Alignment:
| Q |
1 |
tcggagtgtgatttggttcaaatcaatgatttcttctttggcacatggttttgaagaaataaaagtttcctccatcacagaattacttgtgtttctttta |
100 |
Q |
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| T |
928567 |
tcggagtgtgatttggttcaaatcaatgatttcttctttgccacatggttttgaagaaataaaagtttcctccatcacagaattacttttgtttctttta |
928666 |
T |
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| Q |
101 |
tgagttattttgaggctatttatatataaagtcatggagttgnnnnnnnnnnnnctagaatgaaaggaagttacatggaacatggaacatgggatcaagc |
200 |
Q |
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| T |
928667 |
tgagttattttgaggctatt----tataaagtcatggagttgaaaaaagaaaaactagaatgaaaggaagttacatggaacatggaacatgggatcaagc |
928762 |
T |
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| Q |
201 |
aagaa |
205 |
Q |
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||||| |
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| T |
928763 |
aagaa |
928767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 939492 - 939605
Alignment:
| Q |
1 |
tcggagtgtgatttggttcaaatcaatgatttcttctttggcacatggttttgaagaaataaaagtttcctccatcacaga--attacttgtgtttcttt |
98 |
Q |
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|||||||||||||||||||||||||||| ||| ||| ||| ||| |||||| ||||||||||||||||||||||| ||||| | |||||||||||||| |
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| T |
939492 |
tcggagtgtgatttggttcaaatcaatgctttgttcattgccacttggtttggaagaaataaaagtttcctccataacagaacaacacttgtgtttcttt |
939591 |
T |
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| Q |
99 |
tatgagttattttg |
112 |
Q |
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| T |
939592 |
tctgagttaatttg |
939605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 926247 - 926324
Alignment:
| Q |
1 |
tcggagtgtgatttggttcaaatcaatgat---ttcttctttggcacatggttttgaagaaataaaagtttcctccat |
75 |
Q |
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| T |
926247 |
tcggagtgtgatttggttcaaatcgatgatctcttcttctttggcacatggtttggaggaaataaaagtttcttccat |
926324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 935700 - 935740
Alignment:
| Q |
1 |
tcggagtgtgatttggttcaaatcaatgatttcttctttgg |
41 |
Q |
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| T |
935700 |
tcggagtgtgatttggttcaaatcaatgatctcttctttgg |
935740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 924212 - 924287
Alignment:
| Q |
1 |
tcggagtgtgatttggttcaaatcaatgatttcttctttggcacatggttttgaagaaataaaagtttcctccatc |
76 |
Q |
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|||||||||||||||| | | |||||| | ||||||||||||| |||||| ||||||||| ||||| ||||||| |
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| T |
924212 |
tcggagtgtgatttgggttagatcaattctctcttctttggcacctggtttggaagaaatagaagttatctccatc |
924287 |
T |
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