View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5255_low_62 (Length: 202)
Name: NF5255_low_62
Description: NF5255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5255_low_62 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 8e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 8e-97
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 2035979 - 2035797
Alignment:
| Q |
1 |
aaatgagcctaaaactaatgttttctgatttcattcagaaaattcttgcatttgttctcttaacagcaattattaagattagtggtaaaggtggtttgaa |
100 |
Q |
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| T |
2035979 |
aaatgagcctaaaactaatgttttctgatttcattcagaaacttcttgcatttgttctcttaacagcaattattaagattagtggtaaaggtggtttgaa |
2035880 |
T |
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| Q |
101 |
atggattataactggtttttcattatcaacacttcctaatactttgattcttggaattccattgttaaaagcaatgtataagg |
183 |
Q |
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| T |
2035879 |
atggattataactggtttttcattatcaacacttcctaatactttgattcttggaattccattgttaaaagcaatgtataagg |
2035797 |
T |
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Target: chr6 (Bit Score: 62; Significance: 5e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 69 - 161
Target Start/End: Complemental strand, 3217651 - 3217556
Alignment:
| Q |
69 |
attattaagattagtggtaa---aggtggtttgaaatggattataactggtttttcattatcaacacttcctaatactttgattcttggaattcca |
161 |
Q |
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| T |
3217651 |
attattaagattagtgatattagaggaggtttgaaatggattataactggtctttcattatcaacacttcctaatactttgatccttggaattcca |
3217556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 117 - 168
Target Start/End: Complemental strand, 10838876 - 10838825
Alignment:
| Q |
117 |
ttttcattatcaacacttcctaatactttgattcttggaattccattgttaa |
168 |
Q |
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||||||||||||||||||||||| |||||| || | |||||||| ||||||| |
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| T |
10838876 |
ttttcattatcaacacttcctaacactttggttatgggaattcctttgttaa |
10838825 |
T |
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