View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5255_low_8 (Length: 458)
Name: NF5255_low_8
Description: NF5255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5255_low_8 |
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| [»] scaffold0565 (1 HSPs) |
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Alignment Details
Target: scaffold0565 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: scaffold0565
Description:
Target: scaffold0565; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 17 - 449
Target Start/End: Original strand, 8949 - 9380
Alignment:
| Q |
17 |
cattattaagaacggtttaaaatgtctacaacatatacataccctatgatttgattaaggagtaacaaaggaaattgttttacagattcaacattttaga |
116 |
Q |
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| T |
8949 |
cattattaagaacggtttaaaatgtctacaacatatacataccctatgatttgattaaggagtaacaaaggaaattgttttacagattcaacattttaga |
9048 |
T |
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| Q |
117 |
aatatcaaactctgtgttgctcatagagtcgtagctttgctggcatgttcaaagttgaagtagactattttgaagaagatttgtgtctatgacgccaaat |
216 |
Q |
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| T |
9049 |
aatatcaaactctgtgttgctcatagagtcatagctttgctagcatgttcaaagttgaagtagactattttgaagaagatttgtgtctatgacgccaaat |
9148 |
T |
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| Q |
217 |
tccaagttaccaccaacacgctgtacatattatcttgttggatgctcaacattatatttagtcatctggagctatttttgcttaatgttgtatatatcta |
316 |
Q |
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|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
9149 |
tccaagttaccaccaacacgctgtacatattatcttcttgaatgctcaacattatatttagtcatctggagctatttttgcttaatgttgtatataacta |
9248 |
T |
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| Q |
317 |
atatatggccaacttgtccattcagacaagttgatcaatatagtagctgatttttacggattcgatcaatatatgtgttaaattacactctgatacttaa |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
9249 |
atatatggccaacttgtccattcagacaagttgatcaatatagtagctgatttttacggattcgatcaatttatgtgttaaattacactct-atacttaa |
9347 |
T |
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| Q |
417 |
gataaaaataaataaattagccttgagtattat |
449 |
Q |
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| T |
9348 |
gataaaaataaataaatcagccttgagtattat |
9380 |
T |
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