View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5255_low_9 (Length: 447)
Name: NF5255_low_9
Description: NF5255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5255_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 14 - 431
Target Start/End: Original strand, 50108674 - 50109090
Alignment:
| Q |
14 |
atcaggggtggagggtaatgttaacttagggtggccttggcgattctattttatcttaatttatttagnnnnnnnnnnataagttagtgtattattgtgt |
113 |
Q |
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| T |
50108674 |
atcaggggtggagggtaatgttaacttagggtggccttggcgattctattttatcttaatttatttagttttttttg-ataagttagtgtattattgtgt |
50108772 |
T |
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| Q |
114 |
ttagccactctcataatatatataattagctatcccaaaaatttcagtctctactttatcaacaacaaaaatttcaagataatattcgtaaaaatatttt |
213 |
Q |
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| T |
50108773 |
ttagccactctcataatatatataattagctatcccaaaaatttcagtctctactttatcaacaacaaaaatttcaagataatattcgtaaaaatatttt |
50108872 |
T |
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| Q |
214 |
attttatctatatatttagttcctcacaaaactttggctaatttcgctactgtcaacaatgatttggttagataagaaagtttcttatgatcacttacat |
313 |
Q |
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| T |
50108873 |
attttatctatatatttagttcctcacaaaactttggctaatttcgctactgccaacgatgatttggttatataagaaagtttcttatgatcccttacat |
50108972 |
T |
|
| Q |
314 |
gtttttggatgtaaagcatcctgtaaagagtcaaaattgtgtgtttagtggctactacctagatggggctcgttacaagttttattatgttgttatgaag |
413 |
Q |
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| T |
50108973 |
gtttttggatgtaaagcatcctgtaaagagtcaaaattgtgtgtttagtggctactacctagatggagctcgttacaagttttattatgttgttatgaag |
50109072 |
T |
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| Q |
414 |
aaacttatcggatgttgt |
431 |
Q |
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| T |
50109073 |
aaacttatcagatgttgt |
50109090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 92 - 133
Target Start/End: Complemental strand, 4430105 - 4430064
Alignment:
| Q |
92 |
ataagttagtgtattattgtgtttagccactctcataatata |
133 |
Q |
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| T |
4430105 |
ataagttagtgtatttttgtgtttagccactctaataatata |
4430064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 430
Target Start/End: Complemental strand, 28228738 - 28228603
Alignment:
| Q |
294 |
tttcttatgatcacttacatgtttttggatgtaaagcatcctgtaaagagtcaaaattgtgtgtttagtggctactacctagatggggctcgttacaagt |
393 |
Q |
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| T |
28228738 |
tttcttatgaccacttatgtgttttcggatgcaaaacata-tgtgaagagtcaacattgtatgtttctttgctatgacttagatggagctgattacaggt |
28228640 |
T |
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| Q |
394 |
tttattatgttgttatgaagaaacttatcggatgttg |
430 |
Q |
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| T |
28228639 |
tttatgattgtgatatgaagaaacttatcggatgttg |
28228603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 42172197 - 42172134
Alignment:
| Q |
166 |
actttatcaacaacaaaaatt-tcaagataatattcgtaaaaatattttattttatctatatattt |
230 |
Q |
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| T |
42172197 |
actttgtcaacaacgaaaattgtcaagataat--tcgtaaaagtattttattttttctatatattt |
42172134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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