View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5256-Insertion-2 (Length: 541)

Name: NF5256-Insertion-2
Description: NF5256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5256-Insertion-2
NF5256-Insertion-2
[»] chr6 (22 HSPs)
chr6 (8-223)||(32960599-32960814)
chr6 (17-214)||(29124154-29124351)
chr6 (224-364)||(32960422-32960564)
chr6 (19-198)||(34281926-34282105)
chr6 (425-541)||(32960248-32960361)
chr6 (17-214)||(29012838-29013035)
chr6 (8-209)||(29152009-29152210)
chr6 (17-214)||(32744735-32744932)
chr6 (17-209)||(34278327-34278519)
chr6 (18-214)||(29137289-29137485)
chr6 (8-209)||(32740594-32740795)
chr6 (17-191)||(29131314-29131488)
chr6 (12-214)||(29145297-29145499)
chr6 (17-214)||(29300084-29300281)
chr6 (88-209)||(25319201-25319322)
chr6 (88-209)||(26148894-26149015)
chr6 (83-206)||(25519875-25519998)
chr6 (128-215)||(34258128-34258215)
chr6 (97-214)||(25528700-25528817)
chr6 (479-522)||(25526428-25526471)
chr6 (102-196)||(286274-286368)
chr6 (479-515)||(33869765-33869801)
[»] chr4 (10 HSPs)
chr4 (17-208)||(54294961-54295152)
chr4 (30-206)||(9581865-9582041)
chr4 (30-206)||(9587560-9587736)
chr4 (8-206)||(9569189-9569387)
chr4 (17-206)||(9593658-9593847)
chr4 (17-125)||(20426618-20426726)
chr4 (30-170)||(9602503-9602643)
chr4 (479-517)||(37896072-37896110)
chr4 (8-78)||(37897942-37898012)
chr4 (102-154)||(9571882-9571934)
[»] scaffold0054 (2 HSPs)
scaffold0054 (14-214)||(39693-39893)
scaffold0054 (14-214)||(33342-33542)
[»] chr7 (4 HSPs)
chr7 (30-214)||(42446356-42446540)
chr7 (104-207)||(7793913-7794016)
chr7 (19-76)||(5438313-5438370)
chr7 (19-76)||(5447289-5447346)
[»] scaffold0134 (1 HSPs)
scaffold0134 (17-214)||(16100-16297)
[»] scaffold0613 (1 HSPs)
scaffold0613 (17-214)||(203-400)
[»] chr8 (5 HSPs)
chr8 (23-149)||(26607069-26607195)
chr8 (52-158)||(9787431-9787536)
chr8 (30-158)||(15338078-15338206)
chr8 (30-158)||(15427143-15427271)
chr8 (30-158)||(15518447-15518575)
[»] chr5 (8 HSPs)
chr5 (17-210)||(42564848-42565041)
chr5 (30-86)||(40549288-40549344)
chr5 (54-199)||(32642992-32643134)
chr5 (20-120)||(42629597-42629697)
chr5 (15-87)||(43322796-43322868)
chr5 (20-78)||(31789523-31789581)
chr5 (20-129)||(37512898-37513007)
chr5 (17-78)||(42637359-42637420)
[»] chr2 (3 HSPs)
chr2 (17-162)||(7488679-7488824)
chr2 (17-91)||(44937793-44937867)
chr2 (17-162)||(7498819-7498964)
[»] scaffold0129 (2 HSPs)
scaffold0129 (17-219)||(17023-17225)
scaffold0129 (17-158)||(33480-33621)
[»] chr1 (2 HSPs)
chr1 (17-98)||(368801-368882)
chr1 (17-129)||(361883-361995)
[»] chr3 (2 HSPs)
chr3 (140-219)||(44550351-44550430)
chr3 (30-78)||(5162463-5162511)


Alignment Details
Target: chr6 (Bit Score: 184; Significance: 2e-99; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 8 - 223
Target Start/End: Complemental strand, 32960814 - 32960599
Alignment:
Q  8 gaagaaactactacttttcatgtatcaattttgggtgaaatcggtatgaagaaatcttggatcaaactctttgttgttggaccattgccttgtgttgagc 107  Q
    ||||| || ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||    
T  32960814 gaagagacgactacttttcatgtatcaattttggatgaaatcggtatgaaggaatcttggatcaaactctttattgttagaccattgccttgtgttgagc 32960715  T
Q  108 gtcctatgggagtggggaagaagggggaaatattcttcataagaaaagatgaagaattagttttgtttgatttgagtacccaaatgattgagaagcttgg 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  32960714 gtcctatgggagtggggaagaagggggaaatattcttcataagaaaagatgaagaattagttttgtttgatttgggtacccaaatgattgtgaagcttgg 32960615  T
Q  208 ttttaaacgggatatt 223  Q
    ||||||||||||||||    
T  32960614 ttttaaacgggatatt 32960599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 29124154 - 29124351
Alignment:
Q  17 actacttttcatgtatcaattttgggtgaaatcggtatgaagaaatcttggatcaaactctttgttgttggaccattgccttgtgttgagcgtcctatgg 116  Q
    |||||||||||  |||||||| ||||||| |||||||||||| |||| |||| ||| |||||   | | |||||||||||||||||||| |||||||| |    
T  29124154 actacttttcagatatcaattctgggtgagatcggtatgaaggaatcatggaccaagctcttcactatgggaccattgccttgtgttgatcgtcctattg 29124253  T
Q  117 gagtggggaagaagggggaaatattcttcataagaaaagatgaagaattagttttgtttgatttgagtacccaaatgattgagaagcttggttttaaa 214  Q
    ||||||| | ||||||||||||||||||||| ||||||||| ||||| ||| || |||||||||||||||||||||||||||| ||||||||||||||    
T  29124254 gagtgggtatgaagggggaaatattcttcattagaaaagataaagaactagcttggtttgatttgagtacccaaatgattgaggagcttggttttaaa 29124351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 224 - 364
Target Start/End: Complemental strand, 32960564 - 32960422
Alignment:
Q  224 gcattcttcagaggattaagttggtaannnnnnn--cttgttttcacagaactatatgattgtggtcattgggggtattttgtaaacaaagtgacttgtc 321  Q
    |||||||||||||||||||||||||||         |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  32960564 gcattcttcagaggattaagttggtaatttttttttcttgttttcacagaactatatgattgtggttattgggggtattttgtaaacaaagtgacttgtc 32960465  T
Q  322 aattgcttatcaaagtgactagtaaactaagacactatcttgc 364  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  32960464 aattgcttatcaaagtgactagtcaactaagacactatcttgc 32960422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 34281926 - 34282105
Alignment:
Q  19 tacttttcatgtatcaattttgggtgaaatcggtatgaagaaatcttggatcaaactctttgttgttggaccattgccttgtgttgagcgtcctatggga 118  Q
    |||||||| |||||||||||||||| || ||||| | ||  |||| ||||||||||||||| | |||||||| |||||||  |||||||||||||| |||    
T  34281926 tacttttcgtgtatcaattttgggtcaactcggtttcaaagaatcgtggatcaaactctttatggttggaccgttgccttacgttgagcgtcctatcgga 34282025  T
Q  119 gtggggaagaagggggaaatattcttcataagaaaagatgaagaattagttttgtttgatttgagtacccaaatgattga 198  Q
    |||||||  |||||||||||||||||||||||||||||| ||||| | | || |||||||||||||||||||||||||||    
T  34282026 gtggggacaaagggggaaatattcttcataagaaaagataaagaagtggcttggtttgatttgagtacccaaatgattga 34282105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 425 - 541
Target Start/End: Complemental strand, 32960361 - 32960248
Alignment:
Q  425 aatcaaatgaatgaacttttgccttagctattgatctttagttttctgtgtagaagaaataacttatatatgaaaaactttataatctgatgatcaatga 524  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||||||||   ||||||||||||||||||||||||||||||||||||||||||    
T  32960361 aatcaaatgaatgaacttttgccttagctaatgatctttagttttatgtgtagaa---ataacttatatatgaaaaactttataatctgatgatcaatga 32960265  T
Q  525 atttgtatatgaacttt 541  Q
    |||||||||||||||||    
T  32960264 atttgtatatgaacttt 32960248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 29012838 - 29013035
Alignment:
Q  17 actacttttcatgtatcaattttgggtgaaatcggtatgaagaaatcttggatcaaactctttgttgttggaccattgccttgtgttgagcgtcctatgg 116  Q
    |||| ||||||  ||||||||||||| ||  ||||| ||||| |||| |||| |||||||||  |||||||||| ||| |||| ||| |||||||||| |    
T  29012838 actaattttcacatatcaattttgggggatttcggtgtgaaggaatcatggaccaaactcttcattgttggaccgttgtcttgcgttaagcgtcctatcg 29012937  T
Q  117 gagtggggaagaagggggaaatattcttcataagaaaagatgaagaattagttttgtttgatttgagtacccaaatgattgagaagcttggttttaaa 214  Q
    ||||||||| ||| || |||||||||||||| ||||||||||||||| |||||| | |||||||||||||||||||||||||| || |||||| ||||    
T  29012938 gagtggggacgaaaggagaaatattcttcatcagaaaagatgaagaactagtttggcttgatttgagtacccaaatgattgaggaggttggttataaa 29013035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 8 - 209
Target Start/End: Complemental strand, 29152210 - 29152009
Alignment:
Q  8 gaagaaactactacttttcatgtatcaattttgggtgaaatcggtatgaagaaatcttggatcaaactctttgttgttggaccattgccttgtgttgagc 107  Q
    ||||| || |||||||||| |||||||||||||||| || ||||| | |   |||| ||||||||||||||  | |||||||| |||||||  |||||||    
T  29152210 gaagagacgactacttttcgtgtatcaattttgggtcaactcggtttcagagaatcgtggatcaaactcttcatggttggaccgttgccttacgttgagc 29152111  T
Q  108 gtcctatgggagtggggaagaagggggaaatattcttcataagaaaagatgaagaattagttttgtttgatttgagtacccaaatgattgagaagcttgg 207  Q
    ||||||| ||||||||||| || |||||||||||||| |||||||||||| ||||| ||| || ||||||| ||||||| |||||||||||| |||||||    
T  29152110 gtcctatcggagtggggaaaaatggggaaatattctttataagaaaagataaagaagtagcttggtttgatctgagtactcaaatgattgaggagcttgg 29152011  T
Q  208 tt 209  Q
    ||    
T  29152010 tt 29152009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 17 - 214
Target Start/End: Complemental strand, 32744932 - 32744735
Alignment:
Q  17 actacttttcatgtatcaattttgggtgaaatcggtatgaagaaatcttggatcaaactctttgttgttggaccattgccttgtgttgagcgtcctatgg 116  Q
    |||||||||||  |||||||| ||||||| || ||||||||  |||| |||| ||| |||||   | |||||||||||||||| ||||| || ||||| |    
T  32744932 actacttttcacatatcaattatgggtgagattggtatgaaagaatcatggaccaatctcttcactattggaccattgccttgcgttgatcggcctattg 32744833  T
Q  117 gagtggggaagaagggggaaatattcttcataagaaaagatgaagaattagttttgtttgatttgagtacccaaatgattgagaagcttggttttaaa 214  Q
    ||||||| |  |||||||||||||||||||||||||| ||||||||| | | || |||||||||||||||||||||||||||| ||||||||||||||    
T  32744832 gagtgggtacaaagggggaaatattcttcataagaaacgatgaagaactggcttggtttgatttgagtacccaaatgattgaggagcttggttttaaa 32744735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 17 - 209
Target Start/End: Complemental strand, 34278519 - 34278327
Alignment:
Q  17 actacttttcatgtatcaattttgggtgaaatcggtatgaagaaatcttggatcaaactctttgttgttggaccattgccttgtgttgagcgtcctatgg 116  Q
    |||||||||| |||||| ||||||||| || ||||| | ||  |||||||||||||||||||  | |||||||| |||||||  |||||||||||||| |    
T  34278519 actacttttcgtgtatcgattttgggtcaactcggtttcaaagaatcttggatcaaactcttcatggttggaccgttgccttacgttgagcgtcctatcg 34278420  T
Q  117 gagtggggaagaagggggaaatattcttcataagaaaagatgaagaattagttttgtttgatttgagtacccaaatgattgagaagcttggtt 209  Q
    |||||||||  |||||| ||||||||||||||| ||||||| ||||| ||| || |||||||||||||| ||| ||||||||| |||||||||    
T  34278419 gagtggggacaaaggggaaaatattcttcataataaaagataaagaagtagcttggtttgatttgagtatccatatgattgaggagcttggtt 34278327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 29137289 - 29137485
Alignment:
Q  18 ctacttttcatgtatcaattttgggtgaaatcggtatgaagaaatcttggatcaaactctttgttgttggaccattgccttgtgttgagcgtcctatggg 117  Q
    |||||||||||||||| |||||||||||| | ||||||||| || | |||| ||  |||||    ||| |||||||||||||||||||||||||| | ||    
T  29137289 ctacttttcatgtatctattttgggtgaagttggtatgaaggaaacatggaccaggctcttcacagttagaccattgccttgtgttgagcgtccttttgg 29137388  T
Q  118 agtggggaagaagggggaaatattcttcataagaaaagatgaagaattagttttgtttgatttgagtacccaaatgattgagaagcttggttttaaa 214  Q
    ||||||||  ||||||||||||| ||| | |||||||||| ||||| ||| || ||||||||| |||||||||||||| ||| ||||||||||||||    
T  29137389 agtggggacaaagggggaaatatcctttacaagaaaagataaagaactagcttggtttgatttaagtacccaaatgatcgaggagcttggttttaaa 29137485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 8 - 209
Target Start/End: Complemental strand, 32740795 - 32740594
Alignment:
Q  8 gaagaaactactacttttcatgtatcaattttgggtgaaatcggtatgaagaaatcttggatcaaactctttgttgttggaccattgccttgtgttgagc 107  Q
    ||||| || ||||||||||  |||||||||||||||||| |||| || ||| |||| |||| |||||||||  |||||||||||||| || ||||| | |    
T  32740795 gaagacacaactacttttctcgtatcaattttgggtgaattcggcataaaggaatcgtggaccaaactcttcattgttggaccattgtctggtgttcaac 32740696  T
Q  108 gtcctatgggagtggggaagaagggggaaatattcttcataagaaaagatgaagaattagttttgtttgatttgagtacccaaatgattgagaagcttgg 207  Q
    ||||||| |||||||||| ||| || |||||||||||| ||||||||||||||||| |||||| | |||||||  |||| |||| ||||| | |||||||    
T  32740695 gtcctattggagtggggacgaaaggagaaatattcttcctaagaaaagatgaagaactagtttggcttgatttatgtacacaaaggattgcggagcttgg 32740596  T
Q  208 tt 209  Q
    ||    
T  32740595 tt 32740594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 29131314 - 29131488
Alignment:
Q  17 actacttttcatgtatcaattttgggtgaaatcggtatgaagaaatcttggatcaaactctttgttgttggaccattgccttgtgttgagcgtcctatgg 116  Q
    |||||||||||  ||||||||||||||||| | || || ||  |||| |||| |||  ||||  |||||||||||||| || | |||||||||||||| |    
T  29131314 actacttttcacatatcaattttgggtgaatttggcataaaagaatcgtggaccaagatcttcattgttggaccattgtctggcgttgagcgtcctattg 29131413  T
Q  117 gagtggggaagaagggggaaatattcttcataagaaaagatgaagaattagttttgtttgatttgagtacccaaa 191  Q
    |||||||||  || || |||||||||||| ||||||||||||||||| |||||| | ||||||| ||||| ||||    
T  29131414 gagtggggacaaaaggagaaatattcttcctaagaaaagatgaagaactagtttggcttgatttaagtacgcaaa 29131488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 12 - 214
Target Start/End: Original strand, 29145297 - 29145499
Alignment:
Q  12 aaactactacttttcatgtatcaattttgggtgaaatcggtatgaagaaatcttggatcaaactctttgttgttggaccattgccttgtgttgagcgtcc 111  Q
    ||||||||| ||||||  ||||||||||||||| | | ||||||||| |||| |||| |||||||||| || |||||||| |  ||||  || ||| |||    
T  29145297 aaactactaattttcacatatcaattttgggtggattaggtatgaaggaatcatggaccaaactctttattcttggaccactatcttgcattaagcatcc 29145396  T
Q  112 tatgggagtggggaagaagggggaaatattcttcataagaaaagatgaagaattagttttgtttgatttgagtacccaaatgattgagaagcttggtttt 211  Q
    ||| ||||| ||||  || ||||||||||||||   ||||||||| ||||||||||| | ||||||| | |||||||||| ||||||| | ||||||| |    
T  29145397 tatcggagttgggataaaaggggaaatattctttcaaagaaaagacgaagaattagtctggtttgatctaagtacccaaaagattgaggaacttggttat 29145496  T
Q  212 aaa 214  Q
    |||    
T  29145497 aaa 29145499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 29300084 - 29300281
Alignment:
Q  17 actacttttcatgtatcaattttgggtgaaatcggtatgaagaaatcttggatcaaactctttgttgttggaccattgccttgtgttgagcgtcctatgg 116  Q
    |||||||||||  ||||||||||||||||  || |||| ||| |||| |||| ||| |||||   ||||||||| ||| |||| ||  ||||||||||      
T  29300084 actacttttcacatatcaattttgggtgagctcagtataaaggaatcgtggaccaatctcttcaatgttggaccgttggcttgcgtccagcgtcctatca 29300183  T
Q  117 gagtggggaagaagggggaaatattcttcataagaaaagatgaagaattagttttgtttgatttgagtacccaaatgattgagaagcttggttttaaa 214  Q
     | ||||||  ||||||||||||||||| |||| |||||||   ||| ||| || ||||||| ||||||| |||||||||||| ||||||||| ||||    
T  29300184 taatggggacaaagggggaaatattctttataaaaaaagatatggaagtagcttggtttgatctgagtacgcaaatgattgagcagcttggttataaa 29300281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 88 - 209
Target Start/End: Complemental strand, 25319322 - 25319201
Alignment:
Q  88 accattgccttgtgttgagcgtcctatgggagtggggaagaagggggaaatattcttcataagaaaagatgaagaattagttttgtttgatttgagtacc 187  Q
    |||||||| |||||||||||| || ||  |||| |||  || |||||||||||| |||| |||||||||| | |||||||||| | |||||||||| |||    
T  25319322 accattgctttgtgttgagcgcccaattagagttggggtgacgggggaaatatttttcaaaagaaaagataaggaattagtttggcttgatttgagcacc 25319223  T
Q  188 caaatgattgagaagcttggtt 209  Q
    ||| ||||||||| ||||||||    
T  25319222 caattgattgagatgcttggtt 25319201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 88 - 209
Target Start/End: Complemental strand, 26149015 - 26148894
Alignment:
Q  88 accattgccttgtgttgagcgtcctatgggagtggggaagaagggggaaatattcttcataagaaaagatgaagaattagttttgtttgatttgagtacc 187  Q
    |||||||| |||||||||||| || ||  |||| |||  || |||||||||||| |||| |||||||||| | |||||||||| | |||||||||| |||    
T  26149015 accattgctttgtgttgagcgcccaattagagttggggtgacgggggaaatatttttcaaaagaaaagataaggaattagtttggcttgatttgagcacc 26148916  T
Q  188 caaatgattgagaagcttggtt 209  Q
    ||| ||||||||| ||||||||    
T  26148915 caattgattgagatgcttggtt 26148894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 83 - 206
Target Start/End: Complemental strand, 25519998 - 25519875
Alignment:
Q  83 gttggaccattgccttgtgttgagcgtcctatgggagtggggaagaagggggaaatattcttcataagaaaagatgaagaattagttttgtttgatttga 182  Q
    ||||||||| || ||||||||||||||| |||   ||||| ||  ||||  ||||| || |||||||||||||||  |||| |||||| |||||||||||    
T  25519998 gttggaccagtgtcttgtgttgagcgtcatatcatagtggagacaaaggatgaaatgttattcataagaaaagatagagaagtagtttggtttgatttga 25519899  T
Q  183 gtacccaaatgattgagaagcttg 206  Q
    || | |||||||||||| ||||||    
T  25519898 gtgctcaaatgattgaggagcttg 25519875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 128 - 215
Target Start/End: Complemental strand, 34258215 - 34258128
Alignment:
Q  128 aagggggaaatattcttcataagaaaagatgaagaattagttttgtttgatttgagtacccaaatgattgagaagcttggttttaaac 215  Q
    |||||||||||||||||||||||||||||| || || ||| || |||| ||||||| ||||||| ||||||| |||||| || |||||    
T  34258215 aagggggaaatattcttcataagaaaagataaaaaactagcttggtttaatttgagcacccaaacgattgaggagcttgcttataaac 34258128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 97 - 214
Target Start/End: Complemental strand, 25528817 - 25528700
Alignment:
Q  97 ttgtgttgagcgtcctatgggagtggggaagaagggggaaatattcttcataagaaaagatgaagaattagttttgtttgatttgagtacccaaatgatt 196  Q
    ||||||||||| || ||| | ||||||||  |||| | |||||||||||||||||||||||  |||| ||| || ||||||| |||||| | | ||||||    
T  25528817 ttgtgttgagcatcatattgaagtggggaccaaggagaaaatattcttcataagaaaagatagagaagtagattagtttgatatgagtaacaatatgatt 25528718  T
Q  197 gagaagcttggttttaaa 214  Q
    ||| ||||||||| ||||    
T  25528717 gaggagcttggttataaa 25528700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 479 - 522
Target Start/End: Complemental strand, 25526471 - 25526428
Alignment:
Q  479 agaaataacttatatatgaaaaactttataatctgatgatcaat 522  Q
    ||||| |||||||||||| |||||||||||||||||||| ||||    
T  25526471 agaaacaacttatatatggaaaactttataatctgatgaacaat 25526428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 102 - 196
Target Start/End: Complemental strand, 286368 - 286274
Alignment:
Q  102 ttgagcgtcctatgggagtggggaagaagggggaaatattcttcataagaaaagatgaagaattagttttgtttgatttgagtacccaaatgatt 196  Q
    ||||||||||||| ||||| |||||||| || || |||||||||| || | | ||||| ||| |||| | || |||||||||||  |||||||||    
T  286368 ttgagcgtcctattggagtagggaagaaaggtgatatattcttcagaaaagatgatgatgaactagtctcgtctgatttgagtatacaaatgatt 286274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 479 - 515
Target Start/End: Original strand, 33869765 - 33869801
Alignment:
Q  479 agaaataacttatatatgaaaaactttataatctgat 515  Q
    |||||||||||||||| | ||||||||||||||||||    
T  33869765 agaaataacttatatacggaaaactttataatctgat 33869801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 5e-42; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 54295152 - 54294961
Alignment:
Q  17 actacttttcatgtatcaattttgggtgaaatcggtatgaagaaatcttggatcaaactctttgttgttggaccattgccttgtgttgagcgtcctatgg 116  Q
    |||| ||||||  ||||||||||||||||| ||||| |||   |||| |||| |||||| ||  |||||||||| ||| ||| |||||||| |||||| |    
T  54295152 actaattttcacatatcaattttgggtgaattcggtgtgatagaatcgtggaccaaacttttcattgttggaccgttgtcttatgttgagcatcctatcg 54295053  T
Q  117 gagtggggaagaagggggaaatattcttcataagaaaagatgaagaattagttttgtttgatttgagtacccaaatgattgagaagcttggt 208  Q
    ||||||||| ||||||||||||||||||| ||||||||||| ||||| ||| ||||||||||||| ||| ||||||||||||| ||||||||    
T  54295052 gagtggggacgaagggggaaatattcttcgtaagaaaagataaagaagtagctttgtttgatttgtgtagccaaatgattgaggagcttggt 54294961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 30 - 206
Target Start/End: Complemental strand, 9582041 - 9581865
Alignment:
Q  30 tatcaattttgggtgaaatcggtatgaagaaatcttggatcaaactctttgttgttggaccattgccttgtgttgagcgtcctatgggagtggggaagaa 129  Q
    |||||||||||||||||  |||||| ||| | || |||| |||||||||  | |||||||| ||| ||||  ||||||||||||| |||||||| | |||    
T  9582041 tatcaattttgggtgaatacggtataaaggagtcatggaccaaactcttcatggttggaccgttgtcttgcattgagcgtcctattggagtgggaacgaa 9581942  T
Q  130 gggggaaatattcttcataagaaaagatgaagaattagttttgtttgatttgagtacccaaatgattgagaagcttg 206  Q
     || ||||||||| |||| ||| ||||| ||||| ||||||   ||||||| ||||| |||||||||| | ||||||    
T  9581941 aggagaaatattcgtcatcagacaagataaagaactagtttgtcttgatttaagtactcaaatgattgtggagcttg 9581865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 30 - 206
Target Start/End: Complemental strand, 9587736 - 9587560
Alignment:
Q  30 tatcaattttgggtgaaatcggtatgaagaaatcttggatcaaactctttgttgttggaccattgccttgtgttgagcgtcctatgggagtggggaagaa 129  Q
    |||||||||||||||||  |||||| ||| | || |||| |||||||||  | |||||||| ||| ||||  ||||||||||||| |||||||| | |||    
T  9587736 tatcaattttgggtgaatacggtataaaggagtcatggaccaaactcttcatggttggaccgttgtcttgcattgagcgtcctattggagtgggaacgaa 9587637  T
Q  130 gggggaaatattcttcataagaaaagatgaagaattagttttgtttgatttgagtacccaaatgattgagaagcttg 206  Q
     || ||||||||| |||| ||| ||||| ||||| ||||||   ||||||| ||||| |||||||||| | ||||||    
T  9587636 aggagaaatattcgtcatcagacaagataaagaactagtttgtcttgatttaagtactcaaatgattgtggagcttg 9587560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 8 - 206
Target Start/End: Original strand, 9569189 - 9569387
Alignment:
Q  8 gaagaaactactacttttcatgtatcaattttgggtgaaatcggtatgaagaaatcttggatcaaactctttgttgttggaccattgccttgtgttgagc 107  Q
    ||||| || |||| ||||||  |||| ||||||||||||   || || ||| |||| |||| |||||||||  |||||||||| ||| ||||  ||||||    
T  9569189 gaagagacgactaattttcacatatcgattttgggtgaatatggcattaaggaatcgtggaccaaactcttccttgttggaccgttgtcttgcattgagc 9569288  T
Q  108 gtcctatgggagtggggaagaagggggaaatattcttcataagaaaagatgaagaattagttttgtttgatttgagtacccaaatgattgagaagcttg 206  Q
    ||||||| ||||||||||  || || ||||||||| |||| ||||||||| ||||  ||||||   ||||||| ||||| |||||||||| | ||||||    
T  9569289 gtcctatcggagtggggacaaaaggagaaatattcgtcatcagaaaagataaagagctagtttgtattgatttaagtactcaaatgattgtggagcttg 9569387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 9593847 - 9593658
Alignment:
Q  17 actacttttcatgtatcaattttgggtgaaatcggtatgaagaaatcttggatcaaactctttgttgttggaccattgccttgtgttgagcgtcctatgg 116  Q
    |||| ||||||  |||||||||||||||||  |||||| ||| |||| |||| |||  ||||  |||| ||||| ||| |||   |||||||||| || |    
T  9593847 actaattttcagatatcaattttgggtgaatacggtataaaggaatcgtggaccaatttcttcattgtcggaccgttgtctttcattgagcgtcccatcg 9593748  T
Q  117 gagtggggaagaagggggaaatattcttcataagaaaagatgaagaattagttttgtttgatttgagtacccaaatgattgagaagcttg 206  Q
    ||||||| | ||| || |||||||||||||| ||| ||||| ||||| ||||||   ||||||| | ||| |||| ||||| ||||||||    
T  9593747 gagtgggtacgaaaggagaaatattcttcatcagagaagataaagaactagtttgtcttgatttaaatactcaaacgattgtgaagcttg 9593658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 17 - 125
Target Start/End: Original strand, 20426618 - 20426726
Alignment:
Q  17 actacttttcatgtatcaattttgggtgaaatcggtatgaagaaatcttggatcaaactctttgttgttggaccattgccttgtgttgagcgtcctatgg 116  Q
    |||||||||||  ||||||||||  ||||| ||||  ||||| |||| |||| ||||||||||||||||||||||||||  |   ||||||||| ||| |    
T  20426618 actacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggaccattgctctacattgagcgtcttattg 20426717  T
Q  117 gagtgggga 125  Q
    |||||||||    
T  20426718 gagtgggga 20426726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 170
Target Start/End: Complemental strand, 9602643 - 9602503
Alignment:
Q  30 tatcaattttgggtgaaatcggtatgaagaaatcttggatcaaactctttgttgttggaccattgccttgtgttgagcgtcctatgggagtggggaagaa 129  Q
    |||||||||||||||||  |||||| ||| | || |||| ||||||||||  ||||||| | ||| ||||  ||||||||||||| || || |||| |||    
T  9602643 tatcaattttgggtgaatacggtataaaggagtcgtggaccaaactctttaatgttggatcgttgtcttgcattgagcgtcctatcggggttgggatgaa 9602544  T
Q  130 gggggaaatattcttcataagaaaagatgaagaattagttt 170  Q
     || ||||||||  |||| ||| ||||| ||||| ||||||    
T  9602543 aggagaaatatttgtcatcagagaagataaagaagtagttt 9602503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 479 - 517
Target Start/End: Original strand, 37896072 - 37896110
Alignment:
Q  479 agaaataacttatatatgaaaaactttataatctgatga 517  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  37896072 agaaataacttatatttggaaaactttataatctgatga 37896110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 37897942 - 37898012
Alignment:
Q  8 gaagaaactactacttttcatgtatcaattttgggtgaaatcggtatgaagaaatcttggatcaaactctt 78  Q
    ||||| || ||||||||||| |||||| ||||||| ||| | ||||||||| |||| |||| |||||||||    
T  37897942 gaagagacgactacttttcacgtatcagttttgggcgaacttggtatgaaggaatcgtggaccaaactctt 37898012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 102 - 154
Target Start/End: Original strand, 9571882 - 9571934
Alignment:
Q  102 ttgagcgtcctatgggagtggggaagaagggggaaatattcttcataagaaaa 154  Q
    |||||| ||||||  ||||||||| ||| || |||||||||||||||||||||    
T  9571882 ttgagcatcctatcagagtggggacgaaaggagaaatattcttcataagaaaa 9571934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 81; Significance: 7e-38; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 14 - 214
Target Start/End: Complemental strand, 39893 - 39693
Alignment:
Q  14 actactacttttcatgtatcaattttgggtgaaatcggtatgaagaaatcttggatcaaactctttgttgttggaccattgccttgtgttgagcgtccta 113  Q
    ||||||||||||||  || |||||||||||||| |||| || ||| |||| |||||||||||||||  ||||||||| ||| |||| |||||||||||||    
T  39893 actactacttttcacatagcaattttgggtgaactcggcattaaggaatcgtggatcaaactctttactgttggaccgttgtcttgcgttgagcgtccta 39794  T
Q  114 tgggagtggggaagaagggggaaatattcttcataagaaaagatgaagaattagttttgtttgatttgagtacccaaatgattgagaagcttggttttaa 213  Q
    | ||||||||||  || |||||||| ||||||  |||||||||| | ||||||| || ||||||| | ||||||||| |||||||  ||||||||| |||    
T  39793 tcggagtggggacaaaaggggaaattttcttccaaagaaaagataatgaattagcttggtttgatctaagtacccaagtgattgaagagcttggttataa 39694  T
Q  214 a 214  Q
    |    
T  39693 a 39693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 14 - 214
Target Start/End: Complemental strand, 33542 - 33342
Alignment:
Q  14 actactacttttcatgtatcaattttgggtgaaatcggtatgaagaaatcttggatcaaactctttgttgttggaccattgccttgtgttgagcgtccta 113  Q
    |||||||||||| |  || |||||||||||||| |||| || ||| |||| |||| |||||||||   ||||||||| ||| |||| |||||||||||||    
T  33542 actactacttttgacatagcaattttgggtgaactcggcattaaggaatcgtggaccaaactcttcactgttggaccgttgtcttgcgttgagcgtccta 33443  T
Q  114 tgggagtggggaagaagggggaaatattcttcataagaaaagatgaagaattagttttgtttgatttgagtacccaaatgattgagaagcttggttttaa 213  Q
    |  ||||||||| ||| |||||||| ||||||  ||| |||||| | ||||||| || ||||||| | ||||||||| |||||||  ||||||||| |||    
T  33442 tcagagtggggacgaaaggggaaattttcttccaaaggaaagataatgaattagcttggtttgatctaagtacccaagtgattgaagagcttggttataa 33343  T
Q  214 a 214  Q
    |    
T  33342 a 33342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 1e-30; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 30 - 214
Target Start/End: Original strand, 42446356 - 42446540
Alignment:
Q  30 tatcaattttgggtgaaatcggtatgaagaaatcttggatcaaactctttgttgttggaccattgccttgtgttgagcgtcctatgggagtggggaagaa 129  Q
    ||||||||||||||||| | | ||| ||| |||| |||| ||||||| |  |||||||||| |||| |||||||||||||||||| | |||||||| |||    
T  42446356 tatcaattttgggtgaacttgctatcaaggaatcatggaccaaactcgtcattgttggaccgttgcattgtgttgagcgtcctatcgaagtggggatgaa 42446455  T
Q  130 gggggaaatattcttcataagaaaagatgaagaattagttttgtttgatttgagtacccaaatgattgagaagcttggttttaaa 214  Q
     || |||||||||||||| |||||||||| |||| ||| || | ||||||| |||||| | |||||||||  |||||||| ||||    
T  42446456 aggagaaatattcttcattagaaaagatggagaactagcttggcttgatttaagtaccaagatgattgaggggcttggttataaa 42446540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 104 - 207
Target Start/End: Original strand, 7793913 - 7794016
Alignment:
Q  104 gagcgtcctatgggagtggggaagaagggggaaatattcttcataagaaaagatgaagaattagttttgtttgatttgagtacccaaatgattgagaagc 203  Q
    ||||||||||| |||||||||| ||| |||||||||||||||  |||||||||   ||||||||| ||||||||| | |||||||||||||||||  |||    
T  7793913 gagcgtcctattggagtggggacgaaaggggaaatattcttccaaagaaaagacagagaattagtattgtttgatctaagtacccaaatgattgaagagc 7794012  T
Q  204 ttgg 207  Q
    ||||    
T  7794013 ttgg 7794016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 5438370 - 5438313
Alignment:
Q  19 tacttttcatgtatcaattttgggtgaaatcggtatgaagaaatcttggatcaaactc 76  Q
    |||||||||| ||||| ||||||||||| | ||||||||| |||| ||||| ||||||    
T  5438370 tacttttcatatatcagttttgggtgaacttggtatgaaggaatcatggataaaactc 5438313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 5447346 - 5447289
Alignment:
Q  19 tacttttcatgtatcaattttgggtgaaatcggtatgaagaaatcttggatcaaactc 76  Q
    |||||||||| ||||| ||||||||||| | ||||||||| |||| ||||| ||||||    
T  5447346 tacttttcatatatcagttttgggtgaacttggtatgaaggaatcatggataaaactc 5447289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 17 - 214
Target Start/End: Complemental strand, 16297 - 16100
Alignment:
Q  17 actacttttcatgtatcaattttgggtgaaatcggtatgaagaaatcttggatcaaactctttgttgttggaccattgccttgtgttgagcgtcctatgg 116  Q
    |||||||||||  ||||||||||||||||||| |||| |||| |||| |||||||| |||||   | ||||||||||| |||| |||  | ||||||| |    
T  16297 actacttttcacatatcaattttgggtgaaattggtaagaaggaatcatggatcaatctcttcactattggaccattgtcttgcgttaggtgtcctatcg 16198  T
Q  117 gagtggggaagaagggggaaatattcttcataagaaaagatgaagaattagttttgtttgatttgagtacccaaatgattgagaagcttggttttaaa 214  Q
    |||||||||  || |||||| ||||||||  |||||| ||||||||||||| || ||||||| | | ||| |||||||||||| | ||||||| ||||    
T  16197 gagtggggacaaaaggggaattattcttccaaagaaaggatgaagaattagcttggtttgatcttaatactcaaatgattgaggaacttggttataaa 16100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0613 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: scaffold0613
Description:

Target: scaffold0613; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 203 - 400
Alignment:
Q  17 actacttttcatgtatcaattttgggtgaaatcggtatgaagaaatcttggatcaaactctttgttgttggaccattgccttgtgttgagcgtcctatgg 116  Q
    |||||||||||  ||||||||||||||||||| || | |||  |||| |||| ||| | |||   | ||||||||||| |||| ||||||  |||||| |    
T  203 actacttttcacatatcaattttgggtgaaattggaaagaatgaatcatggaccaatcacttcactattggaccattgtcttgcgttgagtttcctatcg 302  T
Q  117 gagtggggaagaagggggaaatattcttcataagaaaagatgaagaattagttttgtttgatttgagtacccaaatgattgagaagcttggttttaaa 214  Q
    |||||||||| || |||||| ||||||||  |||||| ||||||||||||| || ||||||| |   ||| |||||||||||| | ||||||| ||||    
T  303 gagtggggaaaaaaggggaattattcttccaaagaaaggatgaagaattagcttggtttgatcttcatactcaaatgattgaggaacttggttataaa 400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 23 - 149
Target Start/End: Original strand, 26607069 - 26607195
Alignment:
Q  23 tttcatgtatcaattttgggtgaaatcggtatgaagaaatcttggatcaaactctttgttgttggaccattgccttgtgttgagcgtcctatgggagtgg 122  Q
    |||||| ||||| |||| || ||| ||||| ||||  |||| ||||| |||||||||||||||||||| || ||||||||| | |||||| | ||||| |    
T  26607069 tttcatatatcagttttaggcgaactcggtgtgaaagaatcatggattaaactctttgttgttggacctttaccttgtgttcatcgtcctgttggagtcg 26607168  T
Q  123 ggaagaagggggaaatattcttcataa 149  Q
    |||||||||| || |||||||| ||||    
T  26607169 ggaagaagggtgatatattctttataa 26607195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 52 - 158
Target Start/End: Complemental strand, 9787536 - 9787431
Alignment:
Q  52 tatgaagaaatcttggatcaaactctttgttgttggaccattgccttgtgttgagcgtcctatgggagtggggaagaagggggaaatattcttcataaga 151  Q
    |||||||||||| ||||||||||||||   | | | |||  ||||||| || ||||||||||| ||||||||||  ||||| |||||| | ||| |||||    
T  9787536 tatgaagaaatcatggatcaaactcttcactat-gcaccgctgccttgcgtagagcgtcctatcggagtggggaccaagggtgaaataatattcctaaga 9787438  T
Q  152 aaagatg 158  Q
    |||||||    
T  9787437 aaagatg 9787431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 30 - 158
Target Start/End: Complemental strand, 15338206 - 15338078
Alignment:
Q  30 tatcaattttgggtgaaatcggtatgaagaaatcttggatcaaactctttgttgttggaccattgccttgtgttgagcgtcctatgggagtggggaagaa 129  Q
    ||||||||||||||||| ||||  ||||  |||| ||||  ||||| ||||||||||||||| | ||||   |||| |||| ||| |||| ||| |||||    
T  15338206 tatcaattttgggtgaactcggcgtgaaagaatcatggactaaactatttgttgttggaccacttccttacattgatcgtcttattggagcgggaaagaa 15338107  T
Q  130 gggggaaatattcttcataagaaaagatg 158  Q
     || || |||||||||  || ||||||||    
T  15338106 tggtgatatattcttccaaaaaaaagatg 15338078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 30 - 158
Target Start/End: Complemental strand, 15427271 - 15427143
Alignment:
Q  30 tatcaattttgggtgaaatcggtatgaagaaatcttggatcaaactctttgttgttggaccattgccttgtgttgagcgtcctatgggagtggggaagaa 129  Q
    ||||||||||||||||| ||||  ||||  |||| ||||  ||||| ||||||||||||||| | ||||   |||| |||| ||| |||| ||| |||||    
T  15427271 tatcaattttgggtgaactcggcgtgaaagaatcatggactaaactatttgttgttggaccacttccttacattgatcgtcttattggagcgggaaagaa 15427172  T
Q  130 gggggaaatattcttcataagaaaagatg 158  Q
     || || |||||||||  || ||||||||    
T  15427171 tggtgatatattcttccaaaaaaaagatg 15427143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 30 - 158
Target Start/End: Complemental strand, 15518575 - 15518447
Alignment:
Q  30 tatcaattttgggtgaaatcggtatgaagaaatcttggatcaaactctttgttgttggaccattgccttgtgttgagcgtcctatgggagtggggaagaa 129  Q
    ||||||||||||||||| ||||  ||||  |||| ||||  ||||| ||||||||||||||| | ||||   |||| |||| ||| |||| ||| |||||    
T  15518575 tatcaattttgggtgaactcggcgtgaaagaatcatggactaaactatttgttgttggaccacttccttacattgatcgtcttattggagcgggaaagaa 15518476  T
Q  130 gggggaaatattcttcataagaaaagatg 158  Q
     || || |||||||||  || ||||||||    
T  15518475 tggtgatatattcttccaaaaaaaagatg 15518447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 210
Target Start/End: Complemental strand, 42565041 - 42564848
Alignment:
Q  17 actacttttcatgtatcaattttgggtgaaatcggtatgaagaaatcttggatcaaactctttgttgttggaccattgccttgtgttgagcgtcctatgg 116  Q
    ||||||||| |  ||||| ||||||||||| | ||| | ||| |||| ||||||||||| ||  ||||||||||| ||||||| ||| |   |||||| |    
T  42565041 actacttttaacatatcagttttgggtgaactaggtgtcaaggaatcatggatcaaacttttcattgttggaccactgccttgcgttcatattcctattg 42564942  T
Q  117 gagtggggaagaagggggaaatattcttcataagaaaagatgaagaattagttttgtttgatttgagtacccaaatgattgagaagcttggttt 210  Q
    ||||||| |||||||| ||||||||||| | || |||||| || ||| ||| || | ||||||| | |||| | |  |||||| ||||||||||    
T  42564941 gagtgggaaagaagggagaaatattcttaagaaaaaaagacgatgaactagcttggattgatttaaataccaacacaattgaggagcttggttt 42564848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 40549288 - 40549344
Alignment:
Q  30 tatcaattttgggtgaaatcggtatgaagaaatcttggatcaaactctttgttgttg 86  Q
    ||||||||||||||||| ||||| ||||| |||| ||||||||||||||||||||||    
T  40549288 tatcaattttgggtgaagtcggtgtgaaggaatcatggatcaaactctttgttgttg 40549344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 199
Target Start/End: Original strand, 32642992 - 32643134
Alignment:
Q  54 tgaagaaatcttggatcaaactctttgttgttggaccattgccttgtgttgagcgtcctatgggagtggggaagaagggggaaatattcttcataagaaa 153  Q
    ||||| |||| ||||||||||||||  ||||||||||  || | ||||| ||||||||| | |||||||| |||   ||  |||||||||||| || |||    
T  32642992 tgaaggaatcatggatcaaactcttcattgttggacctctgtcatgtgtcgagcgtccttttggagtgggaaag---ggcaaaatattcttcaaaaaaaa 32643088  T
Q  154 agatgaagaattagttttgtttgatttgagtacccaaatgattgag 199  Q
    || | || || ||| || ||||||||| ||||||||||||||||||    
T  32643089 agttaaaaaactagcttggtttgatttaagtacccaaatgattgag 32643134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 42629697 - 42629597
Alignment:
Q  20 acttttcatgtatcaattttgggtgaaatcggtatgaagaaatcttggatcaaactctttgttgttggaccattgccttgtgttgagcgtcctatgggag 119  Q
    ||||||||| ||||||||||||||||| ||||  ||||| | || ||||||||||| ||| |||| || || ||| | |||||||||| |||||| ||||    
T  42629697 acttttcatatatcaattttgggtgaagtcggagtgaaggagtcatggatcaaactttttattgtgggtccgttgacctgtgttgagcatcctattggag 42629598  T
Q  120 t 120  Q
    |    
T  42629597 t 42629597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 43322796 - 43322868
Alignment:
Q  15 ctactacttttcatgtatcaattttgggtgaaatcggtatgaagaaatcttggatcaaactctttgttgttgg 87  Q
    |||||||||||||| | || |||||||||||| ||||| | |||||||  ||||||||||||||| |||||||    
T  43322796 ctactacttttcatatttcgattttgggtgaactcggtgtaaagaaattatggatcaaactctttattgttgg 43322868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 31789523 - 31789581
Alignment:
Q  20 acttttcatgtatcaattttgggtgaaatcggtatgaagaaatcttggatcaaactctt 78  Q
    ||||| ||| ||||||||||||||||| | ||| ||||| |||| ||||||||||||||    
T  31789523 actttccatatatcaattttgggtgaagttggtgtgaaggaatcatggatcaaactctt 31789581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 37512898 - 37513007
Alignment:
Q  20 acttttcatgtatcaattttgggtgaaatcggtatgaagaaatcttggatcaaactctttgttgttggaccattgccttgtgttgagcgtcctatgggag 119  Q
    ||||||||  ||||||||||||||||  | |||  ||||||||| |||||||||||| |   |||||||||  |||||| ||| || | |||||| ||||    
T  37512898 acttttcacatatcaattttgggtgaggttggtgggaagaaatcatggatcaaactcatgactgttggacccatgccttatgtagaacatcctatcggag 37512997  T
Q  120 tggggaagaa 129  Q
    | ||||||||    
T  37512998 tagggaagaa 37513007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 42637420 - 42637359
Alignment:
Q  17 actacttttcatgtatcaattttgggtgaaatcggtatgaagaaatcttggatcaaactctt 78  Q
    |||||||||||  ||||||||||||||||| ||||  ||||| |||| |||| |||||||||    
T  42637420 actacttttcacatatcaattttgggtgaagtcggggtgaaggaatcatggaccaaactctt 42637359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 162
Target Start/End: Complemental strand, 7488824 - 7488679
Alignment:
Q  17 actacttttcatgtatcaattttgggtgaaatcggtatgaagaaatcttggatcaaactctttgttgttggaccattgccttgtgttgagcgtcctatgg 116  Q
    |||||||||||  ||||||||||||||||||| ||| ||||  |||| ||||  ||||| ||   ||||||||||||| |||||||||  ||||||||      
T  7488824 actacttttcacatatcaattttgggtgaaattggtgtgaaagaatcatggaaaaaacttttcaatgttggaccattgtcttgtgttgcacgtcctatca 7488725  T
Q  117 gagtggggaagaagggggaaatattcttcataagaaaagatgaaga 162  Q
    |||  |||||||| ||||| || |||||||||| ||| || |||||    
T  7488724 gaggagggaagaatggggatattttcttcataaaaaatgaagaaga 7488679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 44937867 - 44937793
Alignment:
Q  17 actacttttcatgtatcaattttgggtgaaatcggtatgaagaaatcttggatcaaactctttgttgttggacca 91  Q
    |||||||||||  ||||||||||||||||| ||||  ||||  |||| ||||  |||||||||||||||||||||    
T  44937867 actacttttcacatatcaattttgggtgaactcggcgtgaaagaatcatggactaaactctttgttgttggacca 44937793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 162
Target Start/End: Complemental strand, 7498964 - 7498819
Alignment:
Q  17 actacttttcatgtatcaattttgggtgaaatcggtatgaagaaatcttggatcaaactctttgttgttggaccattgccttgtgttgagcgtcctatgg 116  Q
    |||||||||||  |||||||||||| |||||| |   ||||  |||| ||||  ||||||||   |||||| |||||| |||||||||  ||||| || |    
T  7498964 actacttttcacatatcaattttggatgaaattgacgtgaaagaatcatggactaaactcttcaatgttgggccattgtcttgtgttgcacgtcccatcg 7498865  T
Q  117 gagtggggaagaagggggaaatattcttcataagaaaagatgaaga 162  Q
    |||  |||||||| ||| | |||||||| ||||||||  |||||||    
T  7498864 gaggagggaagaatgggaatatattcttgataagaaataatgaaga 7498819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 17225 - 17023
Alignment:
Q  17 actacttttcatgtatcaattttgggtgaaatcggtatgaagaaatcttggatcaaactctttgttgttggaccattgccttgtgttgagcgtcctatgg 116  Q
    |||||||||||  | || ||| |||||||| ||||| ||||| | |||||||  |||||||| ||| ||||||| || |||||  |||||| |||||| |    
T  17225 actacttttcacatttctattctgggtgaactcggtgtgaaggagtcttggactaaactcttcgttattggacctttaccttgcattgagcatcctatcg 17126  T
Q  117 gagtggggaagaagggggaaatattcttcataagaaaagatgaagaattagttttgtttgatttgagtacccaaatgattgagaagcttggttttaaacg 216  Q
    | | ||| ||||| || ||  ||||||||| |||||||||||  ||| ||||   |||| |||| || |||||| |||||||  |||||||| ||||| |    
T  17125 gggagggaaagaatggtgatctattcttcaaaagaaaagatggcgaactagtcaggtttaatttaagcacccaagtgattgatgagcttggtcttaaagg 17026  T
Q  217 gga 219  Q
    |||    
T  17025 gga 17023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 158
Target Start/End: Complemental strand, 33621 - 33480
Alignment:
Q  17 actacttttcatgtatcaattttgggtgaaatcggtatgaagaaatcttggatcaaactctttgttgttggaccattgccttgtgttgagcgtcctatgg 116  Q
    |||||||||||  | || |||||||||||| | ||| ||||| | |||||||  ||||||||| || |||| || || |||||  | |||| |||||| |    
T  33621 actacttttcacatttctattttgggtgaacttggtgtgaaggagtcttggactaaactctttattattgggcctttaccttgcatcgagcatcctattg 33522  T
Q  117 gagtggggaagaagggggaaatattcttcataagaaaagatg 158  Q
    | | ||| ||||| || || |||||||||| |||||||||||    
T  33521 gggagggaaagaatggtgatatattcttcagaagaaaagatg 33480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 368801 - 368882
Alignment:
Q  17 actacttttcatgtatcaattttgggtgaaatcggtatgaagaaatcttggatcaaactctttgttgttggaccattgcctt 98  Q
    |||||||||||  |||||||| | |||||||| ||| ||||| |||| ||||||||||||||  ||||||||||||| ||||    
T  368801 actacttttcacatatcaattcttggtgaaattggtgtgaaggaatcatggatcaaactcttcattgttggaccattacctt 368882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 361883 - 361995
Alignment:
Q  17 actacttttcatgtatcaattttgggtgaaatcggtatgaagaaatcttggatcaaactctttgttgttggaccattgccttgtgttgagcgtcctatgg 116  Q
    |||||||||||  |||||||| | |||||||||||| ||||| |||| ||||| || |||||  |||||||||||||  ||||| ||| || || ||| |    
T  361883 actacttttcacatatcaattcttggtgaaatcggtgtgaaggaatcatggataaagctcttcattgttggaccattatcttgttttgggcatcttattg 361982  T
Q  117 gagtggggaagaa 129  Q
    |||| ||||||||    
T  361983 gagtagggaagaa 361995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 140 - 219
Target Start/End: Complemental strand, 44550430 - 44550351
Alignment:
Q  140 ttcttcataagaaaagatgaagaattagttttgtttgatttgagtacccaaatgattgagaagcttggttttaaacggga 219  Q
    ||||||| |||||||||||| |||||||||| |||| ||||||||||  | |||||||||  ||||||| ||||| ||||    
T  44550430 ttcttcagaagaaaagatgatgaattagtttggtttaatttgagtactgagatgattgaggtgcttggtattaaagggga 44550351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 5162463 - 5162511
Alignment:
Q  30 tatcaattttgggtgaaatcggtatgaagaaatcttggatcaaactctt 78  Q
    ||||||||||||||||| | ||| ||||| |||| ||||||||||||||    
T  5162463 tatcaattttgggtgaagttggtgtgaaggaatcatggatcaaactctt 5162511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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