View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5256-Insertion-3 (Length: 420)

Name: NF5256-Insertion-3
Description: NF5256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5256-Insertion-3
NF5256-Insertion-3
[»] chr4 (8 HSPs)
chr4 (279-416)||(2622743-2622880)
chr4 (33-225)||(2622946-2623128)
chr4 (7-56)||(37996127-37996176)
chr4 (7-56)||(39161350-39161399)
chr4 (7-56)||(50509364-50509413)
chr4 (7-56)||(55173489-55173538)
chr4 (7-77)||(39161503-39161572)
chr4 (24-56)||(50509278-50509310)
[»] scaffold0781 (1 HSPs)
scaffold0781 (7-61)||(5266-5320)
[»] chr6 (7 HSPs)
chr6 (7-61)||(2216809-2216863)
chr6 (7-77)||(24798687-24798756)
chr6 (7-76)||(18494949-18495017)
chr6 (7-56)||(24798858-24798907)
chr6 (11-63)||(11643898-11643950)
chr6 (7-56)||(18494795-18494843)
chr6 (11-63)||(18494879-18494931)
[»] chr7 (4 HSPs)
chr7 (7-56)||(30862280-30862329)
chr7 (7-61)||(47373526-47373580)
chr7 (7-56)||(28715704-28715753)
chr7 (11-56)||(47373612-47373657)
[»] chr1 (11 HSPs)
chr1 (7-56)||(15825757-15825806)
chr1 (7-77)||(19056212-19056281)
chr1 (7-63)||(37189577-37189633)
chr1 (7-77)||(22683203-22683272)
chr1 (7-63)||(18844521-18844577)
chr1 (7-56)||(10824605-10824654)
chr1 (11-63)||(19056380-19056432)
chr1 (11-56)||(22683290-22683335)
chr1 (7-56)||(37189429-37189478)
chr1 (7-63)||(18844677-18844733)
chr1 (8-56)||(22683377-22683425)
[»] chr3 (7 HSPs)
chr3 (11-61)||(20538076-20538126)
chr3 (7-76)||(40244687-40244756)
chr3 (7-77)||(40364103-40364172)
chr3 (7-77)||(51663466-51663535)
chr3 (7-56)||(20537988-20538037)
chr3 (11-56)||(46003401-46003446)
chr3 (11-63)||(51663399-51663451)
[»] chr8 (6 HSPs)
chr8 (9-77)||(29714606-29714673)
chr8 (7-77)||(2554066-2554135)
chr8 (7-56)||(13884551-13884600)
chr8 (7-56)||(14996695-14996745)
chr8 (7-56)||(13884724-13884773)
chr8 (11-56)||(14996608-14996653)
[»] chr2 (9 HSPs)
chr2 (7-54)||(2916440-2916487)
chr2 (9-77)||(16973128-16973195)
chr2 (11-63)||(24125805-24125857)
chr2 (11-56)||(2916526-2916571)
chr2 (7-63)||(11533673-11533730)
chr2 (7-76)||(13559366-13559434)
chr2 (7-63)||(44594311-44594367)
chr2 (11-56)||(16973213-16973258)
chr2 (7-63)||(44594467-44594523)
[»] chr5 (2 HSPs)
chr5 (11-56)||(21249511-21249556)
chr5 (10-54)||(21249427-21249471)


Alignment Details
Target: chr4 (Bit Score: 138; Significance: 5e-72; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 279 - 416
Target Start/End: Complemental strand, 2622880 - 2622743
Alignment:
Q  279 cgggaagaatcggaagagagtggtcgcaaagctagtccattctttgttcttattatttttattactgcattatgttacttcacagcatatgcaataaaat 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2622880 cgggaagaatcggaagagagtggtcgcaaagctagtccattctttgttcttattatttttattactgcattatgttacttcacagcatatgcaataaaat 2622781  T
Q  379 tgtgcatcaaggactgctccagaaattttcttttcaac 416  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2622780 tgtgcatcaaggactgctccagaaattttcttttcaac 2622743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 33 - 225
Target Start/End: Complemental strand, 2623128 - 2622946
Alignment:
Q  33 ttttgctttgttattagttttagttatttcttgttaatttctctccnnnnnnnnnn---cttatattgggaatgcattggaatcagttatggctatcagt 129  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||             |||||||||||||||||||||||||||||||||            
T  2623128 ttttgctttcttattagttttagttatttgttgttaatttctctccaaaaaaaaaaaaacttatattgggaatgcattggaatcagttatgg-------- 2623037  T
Q  130 gatggttttgaacaacatatgcagtatgctatagaatagacattacctgtgcctaagttgtccaataaaacttttgccttttggcctcttcaaacg 225  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2623036 -----ttttgaacaacatatgcagtatgctatagaatagacattacctgtgcctaagttgtccaataaaacttttgccttttggcctcttcaaacg 2622946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 37996127 - 37996176
Alignment:
Q  7 aatttgtaccaatttggtcccctatattttgctttgttattagttttagt 56  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  37996127 aatttgtatcaatttggtcccctatgttttgctttgttattagttttagt 37996176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 39161350 - 39161399
Alignment:
Q  7 aatttgtaccaatttggtcccctatattttgctttgttattagttttagt 56  Q
    ||||||||||||||||||||||||| |||||||| |||| ||||||||||    
T  39161350 aatttgtaccaatttggtcccctatgttttgcttcgttactagttttagt 39161399  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 50509413 - 50509364
Alignment:
Q  7 aatttgtaccaatttggtcccctatattttgctttgttattagttttagt 56  Q
    ||||||||||||||||||||||||| ||||||||||||| || |||||||    
T  50509413 aatttgtaccaatttggtcccctatgttttgctttgttactaattttagt 50509364  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 55173538 - 55173489
Alignment:
Q  7 aatttgtaccaatttggtcccctatattttgctttgttattagttttagt 56  Q
    |||||||||||||||||||||||||  |||||||||||| | ||||||||    
T  55173538 aatttgtaccaatttggtcccctatgctttgctttgttacttgttttagt 55173489  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 39161572 - 39161503
Alignment:
Q  7 aatttgtaccaatttggtcccctatattttgctttgttattagttttagttatttcttgttaatttctctc 77  Q
    ||||||||||||||| |||| |||| |||||||  |||||||||||||||  |||| ||||| ||||||||    
T  39161572 aatttgtaccaatttagtcctctatgttttgctccgttattagttttagtcctttc-tgttagtttctctc 39161503  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 56
Target Start/End: Original strand, 50509278 - 50509310
Alignment:
Q  24 tcccctatattttgctttgttattagttttagt 56  Q
    ||||||||||||||||||||||||| |||||||    
T  50509278 tcccctatattttgctttgttattaattttagt 50509310  T

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Target: scaffold0781 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0781
Description:

Target: scaffold0781; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 5320 - 5266
Alignment:
Q  7 aatttgtaccaatttggtcccctatattttgctttgttattagttttagttattt 61  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  5320 aatttgtaccaatttggtcccctatgttttgctttgttattagttttagtcattt 5266  T

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Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 2216863 - 2216809
Alignment:
Q  7 aatttgtaccaatttggtcccctatattttgctttgttattagttttagttattt 61  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  2216863 aatttgtaccaatttggtcccctatgttttgctttgttattagttttagtcattt 2216809  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 24798687 - 24798756
Alignment:
Q  7 aatttgtaccaatttggtcccctatattttgctttgttattagttttagttatttcttgttaatttctctc 77  Q
    |||||||||||||||||||| |||| |||||||| |||| |||||||||| ||||| ||||| ||||||||    
T  24798687 aatttgtaccaatttggtcctctatgttttgcttcgttactagttttagtcatttc-tgttagtttctctc 24798756  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 18495017 - 18494949
Alignment:
Q  7 aatttgtaccaatttggtcccctatattttgctttgttattagttttagttatttcttgttaatttctct 76  Q
    |||||||| |||||||||||||||||||||| |  |||||||||||||||| |||| ||||| |||||||    
T  18495017 aatttgtatcaatttggtcccctatattttgatccgttattagttttagttctttc-tgttagtttctct 18494949  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 24798907 - 24798858
Alignment:
Q  7 aatttgtaccaatttggtcccctatattttgctttgttattagttttagt 56  Q
    |||||||| |||||||||||||||| |||||||| |||| ||||||||||    
T  24798907 aatttgtatcaatttggtcccctatgttttgcttcgttactagttttagt 24798858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 11643898 - 11643950
Alignment:
Q  11 tgtaccaatttggtcccctatattttgctttgttattagttttagttatttct 63  Q
    ||||||||||||||||||||| |||||||  |||| |||||||||| ||||||    
T  11643898 tgtaccaatttggtcccctatgttttgctccgttactagttttagtcatttct 11643950  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 18494795 - 18494843
Alignment:
Q  7 aatttgtaccaatttggtcccctatattttgctttgttattagttttagt 56  Q
    ||||||||||| |||||||||||||  |||||||||||| ||||||||||    
T  18494795 aatttgtaccattttggtcccctat-gtttgctttgttactagttttagt 18494843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 18494931 - 18494879
Alignment:
Q  11 tgtaccaatttggtcccctatattttgctttgttattagttttagttatttct 63  Q
    |||| |||||||||||||||||||| ||| | ||| ||||||||||| |||||    
T  18494931 tgtagcaatttggtcccctatatttcgctctattactagttttagttctttct 18494879  T

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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 30862280 - 30862329
Alignment:
Q  7 aatttgtaccaatttggtcccctatattttgctttgttattagttttagt 56  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  30862280 aatttgtaccaatttggtcccctatattttgctttgttactagttttagt 30862329  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 47373526 - 47373580
Alignment:
Q  7 aatttgtaccaatttggtcccctatattttgctttgttattagttttagttattt 61  Q
    ||||||||||||||||||||||||| ||||||| ||||  |||||||||| ||||    
T  47373526 aatttgtaccaatttggtcccctatgttttgctctgttgctagttttagtcattt 47373580  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 28715704 - 28715753
Alignment:
Q  7 aatttgtaccaatttggtcccctatattttgctttgttattagttttagt 56  Q
    |||||||| |||||||||||||||| |||||||| |||| ||||||||||    
T  28715704 aatttgtatcaatttggtcccctatgttttgcttcgttactagttttagt 28715753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 47373612 - 47373657
Alignment:
Q  11 tgtaccaatttggtcccctatattttgctttgttattagttttagt 56  Q
    ||||||||||| ||||||||| |||||||  |||||||||||||||    
T  47373612 tgtaccaatttagtcccctatgttttgctccgttattagttttagt 47373657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 15825806 - 15825757
Alignment:
Q  7 aatttgtaccaatttggtcccctatattttgctttgttattagttttagt 56  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  15825806 aatttgtaccaatttggtcccctatgttttgctttgttattagttttagt 15825757  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 19056212 - 19056281
Alignment:
Q  7 aatttgtaccaatttggtcccctatattttgctttgttattagttttagttatttcttgttaatttctctc 77  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||||  |||| ||||| ||||||||    
T  19056212 aatttgtatcaatttggtcccctatattttgctttgttactagttttagtcttttc-tgttagtttctctc 19056281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 37189633 - 37189577
Alignment:
Q  7 aatttgtaccaatttggtcccctatattttgctttgttattagttttagttatttct 63  Q
    ||||||||||||||||||||||||| |||||||| |||| |||||||||| ||||||    
T  37189633 aatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcatttct 37189577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 22683203 - 22683272
Alignment:
Q  7 aatttgtaccaatttggtcccctatattttgctttgttattagttttagttatttcttgttaatttctctc 77  Q
    |||||||| |||||||||||||||| ||||||||||||| ||||||||||  |||| ||||| ||||||||    
T  22683203 aatttgtatcaatttggtcccctatgttttgctttgttactagttttagtcctttc-tgttagtttctctc 22683272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 18844521 - 18844577
Alignment:
Q  7 aatttgtaccaatttggtcccctatattttgctttgttattagttttagttatttct 63  Q
    |||||||| |||||||||||||||| |||||||| |||| |||||||||| ||||||    
T  18844521 aatttgtatcaatttggtcccctatgttttgcttcgttactagttttagtcatttct 18844577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 10824654 - 10824605
Alignment:
Q  7 aatttgtaccaatttggtcccctatattttgctttgttattagttttagt 56  Q
    |||||||| |||||||||||||||| |||||||| |||| ||||||||||    
T  10824654 aatttgtatcaatttggtcccctatgttttgcttcgttactagttttagt 10824605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 19056432 - 19056380
Alignment:
Q  11 tgtaccaatttggtcccctatattttgctttgttattagttttagttatttct 63  Q
    ||||||||||||||  ||||| ||||||||||||| |||||||||| ||||||    
T  19056432 tgtaccaatttggtatcctatgttttgctttgttactagttttagtcatttct 19056380  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 22683290 - 22683335
Alignment:
Q  11 tgtaccaatttggtcccctatattttgctttgttattagttttagt 56  Q
    ||||||||||||||||||||| |||||||  |||| ||||||||||    
T  22683290 tgtaccaatttggtcccctatgttttgctccgttactagttttagt 22683335  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 37189429 - 37189478
Alignment:
Q  7 aatttgtaccaatttggtcccctatattttgctttgttattagttttagt 56  Q
    |||||||||||||||||||| |||| |||||||  |||| ||||||||||    
T  37189429 aatttgtaccaatttggtcctctatgttttgctccgttactagttttagt 37189478  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 18844733 - 18844677
Alignment:
Q  7 aatttgtaccaatttggtcccctatattttgctttgttattagttttagttatttct 63  Q
    |||||||| ||||||||||| |||| |||||||  |||| ||||||||||| |||||    
T  18844733 aatttgtatcaatttggtcctctatgttttgctccgttactagttttagttctttct 18844677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 22683425 - 22683377
Alignment:
Q  8 atttgtaccaatttggtcccctatattttgctttgttattagttttagt 56  Q
    ||||||||||||||||||| |||| |||||||  |||| ||||||||||    
T  22683425 atttgtaccaatttggtcctctatgttttgctccgttactagttttagt 22683377  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 20538076 - 20538126
Alignment:
Q  11 tgtaccaatttggtcccctatattttgctttgttattagttttagttattt 61  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  20538076 tgtaccaatttggtcccctatgttttgctttgttattagttttagtcattt 20538126  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 40244687 - 40244756
Alignment:
Q  7 aatttgtaccaatttggt-cccctatattttgctttgttattagttttagttatttcttgttaatttctct 76  Q
    |||||||||||||||||| ||||||| ||||||||||||| |||||||||| ||||| ||||| |||||||    
T  40244687 aatttgtaccaatttggttcccctatgttttgctttgttactagttttagtcatttc-tgttagtttctct 40244756  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 40364103 - 40364172
Alignment:
Q  7 aatttgtaccaatttggtcccctatattttgctttgttattagttttagttatttcttgttaatttctctc 77  Q
    |||||||| ||||||| |||||| |||||||||  ||||||||||||||| |||| |||||| ||||||||    
T  40364103 aatttgtatcaatttgatcccctgtattttgctccgttattagttttagtcattt-ttgttagtttctctc 40364172  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 51663535 - 51663466
Alignment:
Q  7 aatttgtaccaatttggtcccctatattttgctttgttattagttttagttatttcttgttaatttctctc 77  Q
    |||||||| ||||||||||| |||| ||||||| ||||| |||||||||| ||||| ||||| ||||||||    
T  51663535 aatttgtagcaatttggtcctctatgttttgctatgttactagttttagtcatttc-tgttagtttctctc 51663466  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 20537988 - 20538037
Alignment:
Q  7 aatttgtaccaatttggtcccctatattttgctttgttattagttttagt 56  Q
    ||||||| ||||||||||||||||| ||||||||  ||| ||||||||||    
T  20537988 aatttgttccaatttggtcccctatgttttgcttcattactagttttagt 20538037  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 46003446 - 46003401
Alignment:
Q  11 tgtaccaatttggtcccctatattttgctttgttattagttttagt 56  Q
    |||||||||||||||| |||| |||||||| |||| ||||||||||    
T  46003446 tgtaccaatttggtcctctatgttttgcttcgttactagttttagt 46003401  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 51663399 - 51663451
Alignment:
Q  11 tgtaccaatttggtcccctatattttgctttgttattagttttagttatttct 63  Q
    ||||| ||||||||||||||| ||||||| ||||  |||||||||| ||||||    
T  51663399 tgtactaatttggtcccctatgttttgctctgttcctagttttagtcatttct 51663451  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 29714606 - 29714673
Alignment:
Q  9 tttgtaccaatttggtcccctatattttgctttgttattagttttagttatttcttgttaatttctctc 77  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||| | ||||| ||||| ||||||||    
T  29714606 tttgtaccaatttggtcccctatattttgctttgttactagctttaatcatttc-tgttagtttctctc 29714673  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 2554135 - 2554066
Alignment:
Q  7 aatttgtaccaatttggtcccctatattttgctttgttattagttttagttatttcttgttaatttctctc 77  Q
    ||||||| ||||||||||| ||||| ||||||||||||| | ||||||||| |||| ||||| ||||||||    
T  2554135 aatttgttccaatttggtctcctatgttttgctttgttacttgttttagttctttc-tgttagtttctctc 2554066  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 13884551 - 13884600
Alignment:
Q  7 aatttgtaccaatttggtcccctatattttgctttgttattagttttagt 56  Q
    ||||||||||||||||| ||||||| |||||||| |||| ||||||||||    
T  13884551 aatttgtaccaatttggccccctatgttttgcttcgttactagttttagt 13884600  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 14996745 - 14996695
Alignment:
Q  7 aatttgtaccaatttggtcccc-tatattttgctttgttattagttttagt 56  Q
    |||||||||||||||| ||||| ||| ||||||||||||| ||||||||||    
T  14996745 aatttgtaccaatttgatccccctatgttttgctttgttactagttttagt 14996695  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 13884773 - 13884724
Alignment:
Q  7 aatttgtaccaatttggtcccctatattttgctttgttattagttttagt 56  Q
    |||||||||||||||||||| |||| |||||||| |||| | ||||||||    
T  13884773 aatttgtaccaatttggtcctctatgttttgcttcgttactggttttagt 13884724  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 14996608 - 14996653
Alignment:
Q  11 tgtaccaatttggtcccctatattttgctttgttattagttttagt 56  Q
    ||||| ||||||||||||||| |||||||| |||| ||||||||||    
T  14996608 tgtactaatttggtcccctatgttttgcttcgttactagttttagt 14996653  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 54
Target Start/End: Original strand, 2916440 - 2916487
Alignment:
Q  7 aatttgtaccaatttggtcccctatattttgctttgttattagtttta 54  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  2916440 aatttgtaccaatttggtcccctatgttttgctttgttactagtttta 2916487  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 16973128 - 16973195
Alignment:
Q  9 tttgtaccaatttggtcccctatattttgctttgttattagttttagttatttcttgttaatttctctc 77  Q
    ||||||||||||||||||||||| |||||||| |||| |||||||| || |||| ||||| ||||||||    
T  16973128 tttgtaccaatttggtcccctatgttttgcttcgttactagttttaattctttc-tgttagtttctctc 16973195  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 24125857 - 24125805
Alignment:
Q  11 tgtaccaatttggtcccctatattttgctttgttattagttttagttatttct 63  Q
    |||| |||||||||||||||| ||||||| |||||||||||||||| ||||||    
T  24125857 tgtatcaatttggtcccctatgttttgctctgttattagttttagtcatttct 24125805  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 2916526 - 2916571
Alignment:
Q  11 tgtaccaatttggtcccctatattttgctttgttattagttttagt 56  Q
    |||||||||||||||||||| ||||||||  |||||||||||||||    
T  2916526 tgtaccaatttggtcccctacattttgctccgttattagttttagt 2916571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 11533730 - 11533673
Alignment:
Q  7 aatttgtaccaatttggt-cccctatattttgctttgttattagttttagttatttct 63  Q
    |||||||||||||||||| ||||||| ||||||||| ||| |||||||||| ||||||    
T  11533730 aatttgtaccaatttggtccccctatgttttgctttattactagttttagtcatttct 11533673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 13559366 - 13559434
Alignment:
Q  7 aatttgtaccaatttggtcccctatattttgctttgttattagttttagttatttcttgttaatttctct 76  Q
    |||||||  |||||||||| | ||||||||| |||||||||||||||||| ||||| ||||| |||||||    
T  13559366 aatttgtttcaatttggtctcatatattttgttttgttattagttttagtcatttc-tgttagtttctct 13559434  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 44594311 - 44594367
Alignment:
Q  7 aatttgtaccaatttggtcccctatattttgctttgttattagttttagttatttct 63  Q
    |||||||| ||||||||||| |||| ||||||| ||||| ||||||||||| |||||    
T  44594311 aatttgtatcaatttggtcctctatgttttgctctgttactagttttagttctttct 44594367  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 16973213 - 16973258
Alignment:
Q  11 tgtaccaatttggtcccctatattttgctttgttattagttttagt 56  Q
    ||||||||||||||||||||| |||||||  |||| ||||||||||    
T  16973213 tgtaccaatttggtcccctatgttttgctccgttactagttttagt 16973258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 44594523 - 44594467
Alignment:
Q  7 aatttgtaccaatttggtcccctatattttgctttgttattagttttagttatttct 63  Q
    |||||||| |||||||||||  ||| |||||||| |||| |||||||||| ||||||    
T  44594523 aatttgtatcaatttggtccattatgttttgcttcgttactagttttagtcatttct 44594467  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 21249511 - 21249556
Alignment:
Q  11 tgtaccaatttggtcccctatattttgctttgttattagttttagt 56  Q
    ||||||||||||||||| ||| ||||||| ||||| ||||||||||    
T  21249511 tgtaccaatttggtcccttatgttttgctctgttactagttttagt 21249556  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 21249427 - 21249471
Alignment:
Q  10 ttgtaccaatttggtcccctatattttgctttgttattagtttta 54  Q
    |||||||||||| ||||||||| |||||||| |||| ||||||||    
T  21249427 ttgtaccaatttagtcccctatgttttgcttcgttactagtttta 21249471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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