View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5256-Insertion-5 (Length: 188)

Name: NF5256-Insertion-5
Description: NF5256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5256-Insertion-5
NF5256-Insertion-5
[»] chr1 (2 HSPs)
chr1 (8-188)||(7581590-7581770)
chr1 (8-188)||(7099476-7099656)
[»] chr5 (15 HSPs)
chr5 (8-172)||(17982978-17983142)
chr5 (8-134)||(30206631-30206757)
chr5 (12-149)||(29853405-29853542)
chr5 (12-134)||(30242247-30242369)
chr5 (64-134)||(30338449-30338519)
chr5 (66-175)||(30060437-30060546)
chr5 (8-113)||(30521496-30521601)
chr5 (8-113)||(30561836-30561941)
chr5 (64-132)||(30483515-30483583)
chr5 (66-149)||(30749737-30749820)
chr5 (64-134)||(29872283-29872353)
chr5 (64-149)||(30435910-30435995)
chr5 (16-115)||(30475503-30475602)
chr5 (12-134)||(30677043-30677165)
chr5 (67-149)||(30713355-30713437)
[»] chr4 (2 HSPs)
chr4 (8-150)||(13616690-13616832)
chr4 (8-134)||(52352067-52352193)
[»] chr7 (1 HSPs)
chr7 (12-149)||(26707429-26707566)


Alignment Details
Target: chr1 (Bit Score: 173; Significance: 3e-93; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 8 - 188
Target Start/End: Original strand, 7581590 - 7581770
Alignment:
Q  8 gaatgaattgtgccaaaagtctttctttcaagacattcatatggatgatgattcaagagacatttctttcaaaatgcatgatctcatccatgatcttgct 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7581590 gaatgaattgtgccaaaagtctttctttcaagacattcatatggatgatgattcaagagacatttctttcaaaatgcatgatctcatccatgatcttgct 7581689  T
Q  108 cgatcagtagtggtgcaagaatgtatggttttagagaatgcatgtttgacaaatatgtcaaaaagcacccttcatattagt 188  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  7581690 cgatcagtagtggtgcaagaatgtatggttttagagaatgaatgtttgacaaatatgtcaaaaagcacccatcatattagt 7581770  T

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Target: chr1; HSP #2
Raw Score: 109; E-Value: 4e-55
Query Start/End: Original strand, 8 - 188
Target Start/End: Complemental strand, 7099656 - 7099476
Alignment:
Q  8 gaatgaattgtgccaaaagtctttctttcaagacattcatatggatgatgattcaagagacatttctttcaaaatgcatgatctcatccatgatcttgct 107  Q
    ||||||||||| |||||| ||||||||||||||||| |||||||||||| |||||||||  |||||||||||||||||||||||| ||||||||||||||    
T  7099656 gaatgaattgtaccaaaaatctttctttcaagacatccatatggatgattattcaagagtgatttctttcaaaatgcatgatctcgtccatgatcttgct 7099557  T
Q  108 cgatcagtagtggtgcaagaatgtatggttttagagaatgcatgtttgacaaatatgtcaaaaagcacccttcatattagt 188  Q
    | |||||||| || ||||||||||||||||||||| ||||||| | |||| ||  ||||||||||||| | ||||||||||    
T  7099556 caatcagtaggggggcaagaatgtatggttttagataatgcatatgtgactaacttgtcaaaaagcacacatcatattagt 7099476  T

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Target: chr5 (Bit Score: 85; Significance: 9e-41; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 9e-41
Query Start/End: Original strand, 8 - 172
Target Start/End: Complemental strand, 17983142 - 17982978
Alignment:
Q  8 gaatgaattgtgccaaaagtctttctttcaagacattcatatggatgatgattcaagagacatttctttcaaaatgcatgatctcatccatgatcttgct 107  Q
    ||||||||||| |||||| ||||||||||||||||| ||||| |||||| ||||||| |  ||||||||||||||||| |||||| ||||||||||||||    
T  17983142 gaatgaattgtaccaaaaatctttctttcaagacatccatattgatgattattcaagtgtgatttctttcaaaatgcacgatctcgtccatgatcttgct 17983043  T
Q  108 cgatcagtagtggtgcaagaatgtatggttttagagaatgcatgtttgacaaatatgtcaaaaag 172  Q
    | |||||||| || ||| |||||| |||||||||||||||||| | |||| ||  ||||||||||    
T  17983042 caatcagtagcggggcatgaatgtgtggttttagagaatgcatctgtgactaacttgtcaaaaag 17982978  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 8 - 134
Target Start/End: Complemental strand, 30206757 - 30206631
Alignment:
Q  8 gaatgaattgtgccaaaagtctttctttcaagacattcatatggatgatgattcaagagacatttctttcaaaatgcatgatctcatccatgatcttgct 107  Q
    |||||||||||||||||| |||||||||||||||||  | |||||  | | |||  |||||||||||||||| |||||||||||  ||||||||||||||    
T  30206757 gaatgaattgtgccaaaaatctttctttcaagacatcaagatggacaacggttctggagacatttctttcaagatgcatgatcttgtccatgatcttgct 30206658  T
Q  108 cgatcagtagtggtgcaagaatgtatg 134  Q
    | ||||||| |||  ||||||||||||    
T  30206657 caatcagtaatgggtcaagaatgtatg 30206631  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 149
Target Start/End: Complemental strand, 29853542 - 29853405
Alignment:
Q  12 gaattgtgccaaaagtctttctttcaagacattcatatggatgatgattcaagagacatttctttcaaaatgcatgatctcatccatgatcttgctcgat 111  Q
    ||||||| ||||||||| ||||||||||| ||  | ||||||||  | ||  ||||||||| |||||| |||||||||||  |||||||||| |||| ||    
T  29853542 gaattgtaccaaaagtcattctttcaagatatcaagatggatgaatactctggagacatttttttcaagatgcatgatcttgtccatgatctcgctcaat 29853443  T
Q  112 cagtagtggtgcaagaatgtatggttttagagaatgca 149  Q
    ||||| ||| |||||||||| ||  ||| |||||||||    
T  29853442 cagtaatggggcaagaatgtgtgtatttggagaatgca 29853405  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 134
Target Start/End: Original strand, 30242247 - 30242369
Alignment:
Q  12 gaattgtgccaaaagtctttctttcaagacattcatatggatgatgattcaagagacatttctttcaaaatgcatgatctcatccatgatcttgctcgat 111  Q
    ||||||| |||||| || || ||||||||||   | ||||||||  ||||  |||||||||||||||| |||||||||||  |||||||||| |||| ||    
T  30242247 gaattgtaccaaaaatcattttttcaagacagcaaaatggatgaatattctggagacatttctttcaagatgcatgatcttgtccatgatctcgctcaat 30242346  T
Q  112 cagtagtggtgcaagaatgtatg 134  Q
    ||||| ||| || ||||||||||    
T  30242347 cagtaatggggccagaatgtatg 30242369  T

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Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 134
Target Start/End: Original strand, 30338449 - 30338519
Alignment:
Q  64 gagacatttctttcaaaatgcatgatctcatccatgatcttgctcgatcagtagtggtgcaagaatgtatg 134  Q
    |||||||||||||||| |||||||||||  |||||||||| |||| ||||||| ||| |||||||||||||    
T  30338449 gagacatttctttcaagatgcatgatcttgtccatgatctcgctcaatcagtaatggggcaagaatgtatg 30338519  T

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Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 66 - 175
Target Start/End: Complemental strand, 30060546 - 30060437
Alignment:
Q  66 gacatttctttcaaaatgcatgatctcatccatgatcttgctcgatcagtagtggtgcaagaatgtatggttttagagaatgcatgtttgacaaatatgt 165  Q
    |||||||| ||||| |||||||| ||  ||||||||||||||| ||||||| ||| |||||||||||||  ||| |||||||||   ||||| | | |||    
T  30060546 gacatttcattcaagatgcatgaccttgtccatgatcttgctcaatcagtaatggggcaagaatgtatgtatttggagaatgcaaacttgactagtttgt 30060447  T
Q  166 caaaaagcac 175  Q
    ||||||||||    
T  30060446 caaaaagcac 30060437  T

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Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 30521496 - 30521601
Alignment:
Q  8 gaatgaattgtgccaaaagtctttctttcaagacattcatatggatgatgattcaagagacatttctttcaaaatgcatgatctcatccatgatcttgct 107  Q
    ||||||||||||||||||||| || || ||||| ||  | ||||  ||||||||| ||| ||||||||||||  ||||||||||  ||||||||||||||    
T  30521496 gaatgaattgtgccaaaagtcatttttccaagaaatcaagatggtcgatgattcaggaggcatttctttcaagttgcatgatcttgtccatgatcttgct 30521595  T
Q  108 cgatca 113  Q
    | ||||    
T  30521596 caatca 30521601  T

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Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 30561836 - 30561941
Alignment:
Q  8 gaatgaattgtgccaaaagtctttctttcaagacattcatatggatgatgattcaagagacatttctttcaaaatgcatgatctcatccatgatcttgct 107  Q
    ||||||||||||||||||||| || || ||||| ||  | ||||  ||||||||| ||| ||||||||||||  ||||||||||  ||||||||||||||    
T  30561836 gaatgaattgtgccaaaagtcatttttccaagaaatcaagatggtcgatgattcaggaggcatttctttcaagttgcatgatcttgtccatgatcttgct 30561935  T
Q  108 cgatca 113  Q
    | ||||    
T  30561936 caatca 30561941  T

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Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 132
Target Start/End: Complemental strand, 30483583 - 30483515
Alignment:
Q  64 gagacatttctttcaaaatgcatgatctcatccatgatcttgctcgatcagtagtggtgcaagaatgta 132  Q
    |||||||||||||||| |||||||||||  |||||||||| |||| ||||||| ||| |||||||||||    
T  30483583 gagacatttctttcaagatgcatgatcttgtccatgatctcgctcaatcagtaatggggcaagaatgta 30483515  T

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Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 66 - 149
Target Start/End: Complemental strand, 30749820 - 30749737
Alignment:
Q  66 gacatttctttcaaaatgcatgatctcatccatgatcttgctcgatcagtagtggtgcaagaatgtatggttttagagaatgca 149  Q
    |||||||| ||||| || ||||||||  ||||||||||||||| ||||||| ||| |||||||||||||  ||| |||||||||    
T  30749820 gacatttcattcaagattcatgatcttgtccatgatcttgctcaatcagtaatggggcaagaatgtatgtatttggagaatgca 30749737  T

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Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 134
Target Start/End: Complemental strand, 29872353 - 29872283
Alignment:
Q  64 gagacatttctttcaaaatgcatgatctcatccatgatcttgctcgatcagtagtggtgcaagaatgtatg 134  Q
    |||||||||||||||| |||||||||||  |||||||||| |||| |||| || ||| |||||||||||||    
T  29872353 gagacatttctttcaagatgcatgatcttgtccatgatctcgctcaatcaataatggggcaagaatgtatg 29872283  T

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Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 149
Target Start/End: Complemental strand, 30435995 - 30435910
Alignment:
Q  64 gagacatttctttcaaaatgcatgatctcatccatgatcttgctcgatcagtagtggtgcaagaatgtatggttttagagaatgca 149  Q
    |||||||||||||||| |||||||||||  |||||||||| |||| |||||||  || | |||||||||||  ||| |||||||||    
T  30435995 gagacatttctttcaagatgcatgatcttgtccatgatctcgctcaatcagtaacggggaaagaatgtatgtatttggagaatgca 30435910  T

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Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 115
Target Start/End: Complemental strand, 30475602 - 30475503
Alignment:
Q  16 tgtgccaaaagtctttctttcaagacattcatatggatgatgattcaagagacatttctttcaaaatgcatgatctcatccatgatcttgctcgatcagt 115  Q
    |||||||||| || ||||| ||||||||  | || |||||| ||||| |||||||| ||||||| |||||||| ||  | ||||||||||||| ||||||    
T  30475602 tgtgccaaaaatcattcttccaagacatcaagatagatgattattcaggagacattactttcaagatgcatgacctagtgcatgatcttgctcaatcagt 30475503  T

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Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 12 - 134
Target Start/End: Original strand, 30677043 - 30677165
Alignment:
Q  12 gaattgtgccaaaagtctttctttcaagacattcatatggatgatgattcaagagacatttctttcaaaatgcatgatctcatccatgatcttgctcgat 111  Q
    ||||||| |||||| || ||||||||||| |   | ||||||||  ||||  ||||||||||||| || |||||||||||  |||||||||| |||| ||    
T  30677043 gaattgtaccaaaaatcattctttcaagatagaaagatggatgaatattctggagacatttcttttaagatgcatgatcttgtccatgatctcgctcaat 30677142  T
Q  112 cagtagtggtgcaagaatgtatg 134  Q
     |||| ||| || ||||||||||    
T  30677143 tagtaatggggccagaatgtatg 30677165  T

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Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 149
Target Start/End: Original strand, 30713355 - 30713437
Alignment:
Q  67 acatttctttcaaaatgcatgatctcatccatgatcttgctcgatcagtagtggtgcaagaatgtatggttttagagaatgca 149  Q
    |||||||||| ||||||||||||||  |||||||||| |||| |||||||  || | |||||||| ||  ||| |||||||||    
T  30713355 acatttcttttaaaatgcatgatcttgtccatgatctcgctcaatcagtaacggggaaagaatgtgtgtatttggagaatgca 30713437  T

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Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 150
Target Start/End: Complemental strand, 13616832 - 13616690
Alignment:
Q  8 gaatgaattgtgccaaaagtctttctttcaagacattcatatggatgatgattcaagagacatttctttcaaaatgcatgatctcat-ccatgatcttgc 106  Q
    ||||||||||| |||||| ||||| ||||||||||| |||||| ||||| |||||||||  ||||| |||||| ||||  ||||| | ||||||||| ||    
T  13616832 gaatgaattgtaccaaaaatctttttttcaagacatccatatgaatgattattcaagagtgatttcattcaaagtgcacaatctcgtcccatgatctcgc 13616733  T
Q  107 tcgatcagtagtggtgcaagaatgtatggttttagagaatgcat 150  Q
    || || ||| | || |||||||||||||||||||||||||||||    
T  13616732 tcaatgagt-ggggggcaagaatgtatggttttagagaatgcat 13616690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 8 - 134
Target Start/End: Complemental strand, 52352193 - 52352067
Alignment:
Q  8 gaatgaattgtgccaaaagtctttctttcaagacattcatatggatgatgattcaagagacatttctttcaaaatgcatgatctcatccatgatcttgct 107  Q
    ||||||||||| ||||||||| ||||||||||||||  | ||  ||||| ||| | |||||||||||||||| |||||||||||  | ||||||||||||    
T  52352193 gaatgaattgtaccaaaagtcattctttcaagacatcaagatcaatgattatttaggagacatttctttcaagatgcatgatcttgtacatgatcttgct 52352094  T
Q  108 cgatcagtagtggtgcaagaatgtatg 134  Q
    | |||| | |||| || ||| ||||||    
T  52352093 caatcaattgtggggccagagtgtatg 52352067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 149
Target Start/End: Complemental strand, 26707566 - 26707429
Alignment:
Q  12 gaattgtgccaaaagtctttctttcaagacattcatatggatgatgattcaagagacatttctttcaaaatgcatgatctcatccatgatcttgctcgat 111  Q
    ||||||| |||||| || ||||||||||||  | | |||| |||  ||||  |||||||||||||||| ||||||||||| ||||||||||| |||| ||    
T  26707566 gaattgtaccaaaaatcattctttcaagactgtaagatgggtgaatattctggagacatttctttcaagatgcatgatcttatccatgatctcgctcaat 26707467  T
Q  112 cagtagtggtgcaagaatgtatggttttagagaatgca 149  Q
    ||||| |||  |||||||| |||  ||| |||||||||    
T  26707466 cagtaatgggacaagaatgcatgtatttggagaatgca 26707429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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