View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5256_high_10 (Length: 456)
Name: NF5256_high_10
Description: NF5256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5256_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 370; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 9 - 426
Target Start/End: Original strand, 19782528 - 19782945
Alignment:
| Q |
9 |
gattatactcaaaataaagaaacaaacacaagtataaccattaaacagttatggatattttaatatactgctcatgatggtattagtaacagctcctaat |
108 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19782528 |
gattatactcaaaataaagaaacagacacaagtataaccattgaacaattatggatattttaatatactgctcatgatggtattagtaacagctcctaat |
19782627 |
T |
|
| Q |
109 |
gtgtaaccacatgacaattacgaataaagtattatgctcctaattaatagcttcaaatatcacaacagatgaacatttgagaatcttgtacaaactgatc |
208 |
Q |
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||||||||||||||||||||| ||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19782628 |
gtgtaaccacatgacaattacaaataaagtattgtgttcttaattaatagcttcaaatatcacaacagatgaacatttgagaatcttgtacaaactgatc |
19782727 |
T |
|
| Q |
209 |
tagcactagtgattgttctaaacaaaattattcatgaaatgcaacttgaggactttgatattaaggcagaaaagaatggacacgatcaactaaaacacat |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
19782728 |
tagcactagtgattgttctaaacaaaattattcatgaaatgcaacttgaggaatttgatattaaggcagaaaagaatggacacggtcaactaaaacacat |
19782827 |
T |
|
| Q |
309 |
tcattttcaaaatcaatcatcttcctaaaaacaaacttaagataatttgaaaataaatcatcacatacacaaactagaaaccaagtctgcgtgtttcgat |
408 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
19782828 |
tcattttcaaaatcaatcatcttcttaaaaacaaacttaagataatttgaaaataaatcatcacatacacaaactagaaaccaagtctgcgtgttttgat |
19782927 |
T |
|
| Q |
409 |
aacgcaattacttataat |
426 |
Q |
| |
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||| |||||||||||||| |
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| T |
19782928 |
aactcaattacttataat |
19782945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 9 - 337
Target Start/End: Original strand, 16632424 - 16632754
Alignment:
| Q |
9 |
gattatactca--aaataaagaaacaaacacaagtataaccattaaacagttatggatattttaatatactgctcatgatggtattagtaacagctccta |
106 |
Q |
| |
|
||||||||||| ||||||||||||| | ||||||||||||||| |||| ||||||| ||||||||||| |||||||||||||| ||||||| |||| |
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| T |
16632424 |
gattatactcataaaataaagaaacatatacaagtataaccattgaacaactatggatgttttaatataccattcatgatggtattattaacagcaccta |
16632523 |
T |
|
| Q |
107 |
atgtgtaaccacatgacaattacgaataaagtattatgctcctaattaatagcttcaaatatcacaacagatgaacatttgagaatcttgtacaaactga |
206 |
Q |
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||||||||| || ||||||||||| ||||||| | |||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||| ||| |
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| T |
16632524 |
atgtgtaactaccggacaattacgactaaagtaatttgctcctaattaatagtttcaaatatcacaacagatgcacatttgagaatcatgtacaaattga |
16632623 |
T |
|
| Q |
207 |
tctagcactagtgattgttctaaacaaaattattcatgaaatgcaacttgaggactttgatattaaggcagaaaagaatggacacgatcaactaaaacac |
306 |
Q |
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||||||| || || |||| | |||||||||||||||| ||| ||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||| |
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| T |
16632624 |
tctagcattaatggttgtcccaaacaaaattattcataaaaggcaacttgaggactttgatcttaacgcagaaaagaatggacacagtcaactaaaacac |
16632723 |
T |
|
| Q |
307 |
attcattttcaaaatcaatcatcttcctaaa |
337 |
Q |
| |
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|| |||||||||||||||| | ||||||||| |
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|
| T |
16632724 |
atccattttcaaaatcaattagcttcctaaa |
16632754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 426
Target Start/End: Original strand, 16632752 - 16632820
Alignment:
| Q |
359 |
aaataaatc-atcacatacacaaactagaaaccaagtctgcgtgtttcgataacgcaattacttataat |
426 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||| || |||| |||||| ||||||||||||||| |
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| T |
16632752 |
aaataaatctatcacatacacaaaatagaaaccaagtttgtgtgtgtcgatagagcaattacttataat |
16632820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 105 - 426
Target Start/End: Complemental strand, 39866173 - 39865852
Alignment:
| Q |
105 |
taatgtgtaa-ccacatgacaattacgaataaagtattatgctcctaattaatagcttcaaatatcacaacagatgaacatttgagaatcttgtacaaac |
203 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39866173 |
taatgtgtaaaccacatgacaattacgaataaagtattgtgctcctaaataatagcttcaaatatcacaacagatgaacatttgagaatcttgtacaaac |
39866074 |
T |
|
| Q |
204 |
tgatctagcactagtgattgttctaaacaaaattattcatgaaatgcaacttgaggactttgatattaaggcagaaaagaatggacacgatcaactaaaa |
303 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| | |||||||| |
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| T |
39866073 |
tgatctaacactagtgattgttctaaacaaaattattcatgaaacgcaacttgaggactttgatattaaggcagaaaagaagggacacggtaaactaaaa |
39865974 |
T |
|
| Q |
304 |
cacattcattttcaaaatcaatcatcttcctaaaaacaaacttaagataatttgaaaataaatcatcacatacacaaactagaaaccaagtctgcgtgtt |
403 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
39865973 |
cacattcattttcaaaatcaatcatctttctaaaaacaaacttaagataatttgaaaataaatcatcacatacataaactag-aaccaagtctgcgtgtt |
39865875 |
T |
|
| Q |
404 |
tcgataacgcaattacttataat |
426 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
39865874 |
tcgataacgcaattacttataat |
39865852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 39866230 - 39866173
Alignment:
| Q |
9 |
gattatactcaaaataaagaaacaaacacaagtataaccattaaacagttatggatat |
66 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||| |
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| T |
39866230 |
gattatactcaaaataaagaaacagacacaagtataaccattgaacacttatggatat |
39866173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 9 - 307
Target Start/End: Original strand, 248690 - 248984
Alignment:
| Q |
9 |
gattatactcaaaataaagaaacaaacacaagtataac---cattaaacagttatggatattttaatatactgctcatgatggtattagtaacagctcct |
105 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
248690 |
gattatactcaaaataaagaaacagacacaagtataacaaccattgaacaattatggatattttaatatactgctcatgatggtattagtaaca------ |
248783 |
T |
|
| Q |
106 |
aatgtgtaaccacatgacaattacgaataaagtattatgctcctaattaatagcttcaaatatcacaacagatgaacatttgagaatcttgtacaaactg |
205 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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|
| T |
248784 |
-atgtgtaaccacatgacaattaccaataaagtattgtgctcctaattaatagcttcaaatatcacaatggatgaacatttgagaatcttgtaaaaactg |
248882 |
T |
|
| Q |
206 |
atctagcactagtgattgttctaaacaaaattattcatgaaatgcaacttgaggactttgatattaaggcagaaaagaatggacacgatcaactaaaaca |
305 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
248883 |
atctagcaatagtgattgttctaaacaaaattattcatgaaatgcaacttgaggactttgatattaaggcagaaaagaatggacacggtcaactaaaaca |
248982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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