View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5256_high_17 (Length: 303)
Name: NF5256_high_17
Description: NF5256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5256_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 297
Target Start/End: Original strand, 28667178 - 28667458
Alignment:
| Q |
18 |
cttgtcactcaggaaccgctacagaaaaggtcttttgcacaagtgttgtctcctgcaggcggtgcttctag-gcacctcttcctcaaccgacaattcatg |
116 |
Q |
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| T |
28667178 |
cttgtcacttaggaaccgctacagaaaaggtcttttgcacaagtgttgtttcctgcaggcggtgcttctagtgcacctcttcctcaaccgacaattcgtg |
28667277 |
T |
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| Q |
117 |
gggataatctgttaataaaaattaccgacgaagtgtatgccaaaggattagagaaatgcaagcaccacatgcacgacaggttgttcttgaacaagggcga |
216 |
Q |
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| T |
28667278 |
gggattatctgtcaataaaaattaccgacgaagtgtatgccaaaggattagagaaatgcaagcaccacatgcacgacaggttgttcttgaacaagggcga |
28667377 |
T |
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| Q |
217 |
caaaccgtacactgctaaggaaattactaacattattgaagcaatggaaaacaaagggagcatggaaactgacttctcttg |
297 |
Q |
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| T |
28667378 |
caaaccgtacactgctaaggaaattactgacattattgaagcaatggaaaacaaagggaccatggcaactgatttctcttg |
28667458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 38 - 147
Target Start/End: Original strand, 17257365 - 17257475
Alignment:
| Q |
38 |
acagaaaaggtcttttgcacaagtgttgtctcctgcaggcggtgcttctag-gcacctcttcctcaaccgacaattcatggggataatctgttaataaaa |
136 |
Q |
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| T |
17257365 |
acagaaaaggtcttttgcacaagtgttgtcacctacggccagtgcttcttgtgcacctcttcctcaaccgacaattcgtggggataatctttctataaga |
17257464 |
T |
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| Q |
137 |
attaccgacga |
147 |
Q |
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| T |
17257465 |
attaccgacga |
17257475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 234
Target Start/End: Complemental strand, 23869849 - 23869703
Alignment:
| Q |
88 |
ggcacctcttcctcaaccgacaattcatggggataatctgttaataaaaattaccgacgaagtgtatgccaaaggattagagaaatgcaagcaccacatg |
187 |
Q |
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|||||||||||||||||||||| |||| ||||||||| | | |||||||||||| || | || ||| || || ||||| |||| ||| | || ||| |
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| T |
23869849 |
ggcacctcttcctcaaccgacagttcaaggggataatttatcaataaaaattacagagaatgtctatctcatggggttagataaatcaaagtatcatatg |
23869750 |
T |
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| Q |
188 |
cacgacaggttgttcttgaacaagggcgacaaaccgtacactgctaa |
234 |
Q |
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| T |
23869749 |
cacgaccggatattcttgaacaggggtgacaagccgtacacagctaa |
23869703 |
T |
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