View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5256_high_2 (Length: 563)
Name: NF5256_high_2
Description: NF5256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5256_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 16 - 545
Target Start/End: Original strand, 46105731 - 46106257
Alignment:
| Q |
16 |
aaatgaagttttgggaagagttaaaaggcttatttcacatattcaactgagaaannnnnnnctatgaggggatctaaatgagcatgtatgaaatgtgtca |
115 |
Q |
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| T |
46105731 |
aaatgaagttttgggaagagttaaaaggcttatttcacatattcaactgagaaaagtttttctatgacgggatctaaatgagcatgtatgaaatgtgtca |
46105830 |
T |
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| Q |
116 |
acaggttttgagggcttgcacatgggttatggcctcgatgatgttaaaccaaagggtaattccatcttgggttttttgacgactttagaccttactatat |
215 |
Q |
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| T |
46105831 |
agaggttttgagggcttgcacatgggttatggcctcgatgatgttaaaccaaagggtaattccatcttgggttttttgacgactttagaccttactatat |
46105930 |
T |
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| Q |
216 |
ctaatgtgtgctttaagaaaatatagaagcatgcatcttatcatatgaaagagtggggtgacatgttatcaaatgaatttctttcttattaggtgataag |
315 |
Q |
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| T |
46105931 |
ctaatgcgtgctttaagaaaatagagaagcat----ctaatcatatgaaagaatggggtgacatgttatcaaatgaatttctttcttattaggtgataag |
46106026 |
T |
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| Q |
316 |
acaaaaagatttgtttcgactaaaaagtcatacttggagatagattgacaattcaacatagagcattggttatgggtgtaaggtttgagaggatagtgaa |
415 |
Q |
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| T |
46106027 |
acgaaaagatttgtttcgactaaaaagtcatacttggagacagattgacaattcaacatagagcattggttatgggtgtaaggtttgagaggatagtgaa |
46106126 |
T |
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| Q |
416 |
gagaagaagccacactaaagctccacatatcaagtggtaacatttaaagggtgaaaatgtttttccaacacaaaatcttaaa-gggggtttcaaacaacc |
514 |
Q |
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| T |
46106127 |
gagaagaagccacactaaagctccacatatcaagtggtaacatttaaagggtgaaaatgtttttccaacacaaaatcttaaaggggggtttcgaacaaca |
46106226 |
T |
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| Q |
515 |
agaagtaagcacaaacgatacttgtgacaaa |
545 |
Q |
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| T |
46106227 |
agaagtaagcacaaacgatacttgtgacaaa |
46106257 |
T |
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Back To:
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Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 248 - 308
Target Start/End: Original strand, 7090234 - 7090294
Alignment:
| Q |
248 |
gcatcttatcatatgaaagagtggggtgacatgttatcaaatgaatttctttcttattagg |
308 |
Q |
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| T |
7090234 |
gcatcttatcacatacaagagcgggttaacatgttctcagatgaatttctttcttattagg |
7090294 |
T |
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