View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5256_high_21 (Length: 274)
Name: NF5256_high_21
Description: NF5256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5256_high_21 |
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Alignment Details
Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 24 - 188
Target Start/End: Complemental strand, 12298805 - 12298641
Alignment:
| Q |
24 |
tcatttctcatagatggaaaagcaggtagaaggagtatttatatggatacaaagctcctaattacatgctaatctcaattagaaagctaagctatactaa |
123 |
Q |
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| T |
12298805 |
tcatttctcctagatggaaaagcaagtacaaggagtatttatatgaatacaaagctcccaattagatgctaatctcaattagtaaactaagctatactaa |
12298706 |
T |
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| Q |
124 |
gtaacttgtacatcaagtaatactgctaactatcttctcttccttttcttctttctctaacagta |
188 |
Q |
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| T |
12298705 |
gtaacttatacatcaagtaatcctgctagctatctcctcttcctttctttctttctctaatagta |
12298641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 24 - 97
Target Start/End: Complemental strand, 31962903 - 31962830
Alignment:
| Q |
24 |
tcatttctcatagatggaaaagcaggtagaaggagtatttatatggatacaaagctcctaattacatgctaatc |
97 |
Q |
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| T |
31962903 |
tcatttctcatagatggaaaagcaagtacaaggagtatttatagagatacaaagctcctaatttcatgctaatc |
31962830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 91
Target Start/End: Complemental strand, 31960998 - 31960931
Alignment:
| Q |
24 |
tcatttctcatagatggaaaagcaggtagaaggagtatttatatggatacaaagctcctaattacatg |
91 |
Q |
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| T |
31960998 |
tcatttctcatagatggaaaagcaagtacaaggagtatttatagagatacaaggctcctaattacatg |
31960931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 55 - 144
Target Start/End: Complemental strand, 28557867 - 28557779
Alignment:
| Q |
55 |
ggagtatttatatggatacaaagctcctaattacatgctaatctcaattagaaagctaagctatactaagtaacttgtacatcaagtaat |
144 |
Q |
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| T |
28557867 |
ggagtatttattagtgtacaaagctcctaattacatgctaatctcaattattaa-ctaagctaaacatagtaacttgtacatcaagtaat |
28557779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 143
Target Start/End: Complemental strand, 28562561 - 28562473
Alignment:
| Q |
55 |
ggagtatttata-tgg-atacaaagctcctaattacatgctaatctcaattagaaagctaagctatactaagtaacttgtacatcaagtaa |
143 |
Q |
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| T |
28562561 |
ggagtatttataatggtatacaaagctcctaat-acatgctaatctcaattattaa-ctaagttaaacatagtaaattgtacatcaagtaa |
28562473 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 24 - 143
Target Start/End: Complemental strand, 45094779 - 45094660
Alignment:
| Q |
24 |
tcatttctcatagatggaaaagcaggtagaaggagtatttatatggatacaaagctcctaattacatgctaatctcaattagaaagctaagctatactaa |
123 |
Q |
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|||||| ||||||||||||||||| ||| | |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
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| T |
45094779 |
tcatttttcatagatggaaaagcaagtacataaagtatttatatgaatacaaagctcctaattacatgctaatctcaattagtaagctaagctatattaa |
45094680 |
T |
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| Q |
124 |
gtaacttgtacatcaagtaa |
143 |
Q |
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||||||||||| |||||||| |
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| T |
45094679 |
gtaacttgtacttcaagtaa |
45094660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 25 - 144
Target Start/End: Original strand, 18962352 - 18962470
Alignment:
| Q |
25 |
catttctcatagatggaaaagcaggtagaaggagtatttatatggatacaaagctcctaattacatgctaatctcaattagaaagctaagctatactaag |
124 |
Q |
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||||||||||||||| | ||||| || |||||||||||||| | ||||||||||||||||||||| |||||||||||| || ||||| ||| ||||| |
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| T |
18962352 |
catttctcatagatgaataagcaactacaaggagtatttataagagtacaaagctcctaattacatgttaatctcaattattaa-ctaagttatgctaag |
18962450 |
T |
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| Q |
125 |
taacttgtacatcaagtaat |
144 |
Q |
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|||||||||||||||||||| |
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| T |
18962451 |
taacttgtacatcaagtaat |
18962470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 186 - 261
Target Start/End: Original strand, 14720240 - 14720315
Alignment:
| Q |
186 |
gtaaggatcgtgaaattttggattcttcgattaagcccaggctctgcaagcaataaaatcaatatcaacttgagta |
261 |
Q |
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| T |
14720240 |
gtaaggatctagaaattttggattcttcaattaagcccaggctctgcaagcaataaaatcaatatccacttgagta |
14720315 |
T |
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